|
Name |
Accession |
Description |
Interval |
E-value |
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-255 |
0e+00 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 543.04 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARM 80
Cdd:PRK11300 1 MSQPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKSGLFSGLLKTPAFRRAHSEALDRAATWLERINLLQHANRQAGNLAYGDQR 160
Cdd:PRK11300 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 161 RLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQ 240
Cdd:PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240
|
250
....*....|....*
gi 1821658505 241 IRNNPDVIRAYLGEA 255
Cdd:PRK11300 241 IRNNPDVIKAYLGEA 255
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
2-255 |
2.33e-145 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 406.73 E-value: 2.33e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 2 SQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMG 81
Cdd:COG0411 1 SDPLLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIARLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKSGLFSGLLKTPAFRRAHSEALDRAATWLERINLLQHANRQAGNLAYGDQRR 161
Cdd:COG0411 81 IARTFQNPRLFPELTVLENVLVAAHARLGRGLLAALLRLPRARREEREARERAEELLERVGLADRADEPAGNLSYGQQRR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 162 LEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQI 241
Cdd:COG0411 161 LEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGTPAEV 240
|
250
....*....|....
gi 1821658505 242 RNNPDVIRAYLGEA 255
Cdd:COG0411 241 RADPRVIEAYLGEE 254
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
6-247 |
2.54e-118 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 337.49 E-value: 2.54e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVVRT 85
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 86 FQHVRLFREMTVIENLLVAQHQQLKSGLFSGllktpAFRRAHSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIA 165
Cdd:cd03219 81 FQIPRLFPELTVLENVMVAAQARTGSGLLLA-----RARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 166 RCMVTQPAILMLDEPAAGLNPKETKELDELIVELRnHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNP 245
Cdd:cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELR-ERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNP 234
|
..
gi 1821658505 246 DV 247
Cdd:cd03219 235 RV 236
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-254 |
1.10e-79 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 240.02 E-value: 1.10e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARM 80
Cdd:COG4674 6 MHGPILYVEDLTVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGLDEHEIARL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 81 GVVRTFQHVRLFREMTVIENLLVAQHQqlKSGLFSGLlktpaFRRAHSEALDRAATWLERINLLQHANRQAGNLAYGDQR 160
Cdd:COG4674 86 GIGRKFQKPTVFEELTVFENLELALKG--DRGVFASL-----FARLTAEERDRIEEVLETIGLTDKADRLAGLLSHGQKQ 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 161 RLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHntTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQ 240
Cdd:COG4674 159 WLEIGMLLAQDPKLLLLDEPVAGMTDAETERTAELLKSLAGKH--SVVVVEHDMEFVRQIARKVTVLHQGSVLAEGSLDE 236
|
250
....*....|....
gi 1821658505 241 IRNNPDVIRAYLGE 254
Cdd:COG4674 237 VQADPRVIEVYLGR 250
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
6-253 |
3.01e-62 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 195.07 E-value: 3.01e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVVRT 85
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 86 FQHVRLFREMTVIENLLVAQHQQLKSGlfsgllktpAFRRAHSEALdraatwLERINLLQHANRQAGNLAYGDQRRLEIA 165
Cdd:cd03218 81 PQEASIFRKLTVEENILAVLEIRGLSK---------KEREEKLEEL------LEEFHITHLRKSKASSLSGGERRRVEIA 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 166 RCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNP 245
Cdd:cd03218 146 RALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANE 224
|
....*...
gi 1821658505 246 DVIRAYLG 253
Cdd:cd03218 225 LVRKVYLG 232
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
4-253 |
3.20e-62 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 195.20 E-value: 3.20e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 4 PLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVV 83
Cdd:COG0410 2 PMLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIARLGIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 84 rtfqHV----RLFREMTVIENLLVAqhqqlksglfsgllktpAFRRAHSEALDRAatwLERI-----NLLQHANRQAGNL 154
Cdd:COG0410 82 ----YVpegrRIFPSLTVEENLLLG-----------------AYARRDRAEVRAD---LERVyelfpRLKERRRQRAGTL 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 155 AYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQGTPLA 234
Cdd:COG0410 138 SGGEQQMLAIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLNR-EGVTILLVEQNARFALEIADRAYVLERGRIVL 216
|
250
....*....|....*....
gi 1821658505 235 NGTPEQIRNNPDVIRAYLG 253
Cdd:COG0410 217 EGTAAELLADPEVREAYLG 235
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
4-254 |
2.15e-61 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 192.94 E-value: 2.15e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 4 PLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVV 83
Cdd:COG1137 2 MTLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPMHKRARLGIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 84 RTFQHVRLFREMTVIENLL-VAQHQQLksglfsgllkTPAFRRAHSEALdraatwLERINLLQHANRQAGNLAYGDQRRL 162
Cdd:COG1137 82 YLPQEASIFRKLTVEDNILaVLELRKL----------SKKEREERLEEL------LEEFGITHLRKSKAYSLSGGERRRV 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 163 EIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIR 242
Cdd:COG1137 146 EIARALATNPKFILLDEPFAGVDPIAVADIQKIIRHLKE-RGIGVLITDHNVRETLGICDRAYIISEGKVLAEGTPEEIL 224
|
250
....*....|..
gi 1821658505 243 NNPDVIRAYLGE 254
Cdd:COG1137 225 NNPLVRKVYLGE 236
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
6-244 |
1.77e-57 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 182.63 E-value: 1.77e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVVRT 85
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 86 FQHVRLFREMTVIENLLVAqhqqlksglfsgllktpAFRRAHSEALDRaatwLERI-----NLLQHANRQAGNLAYGDQR 160
Cdd:cd03224 81 PEGRRIFPELTVEENLLLG-----------------AYARRRAKRKAR----LERVyelfpRLKERRKQLAGTLSGGEQQ 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 161 RLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRnHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQ 240
Cdd:cd03224 140 MLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR-DEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAE 218
|
....
gi 1821658505 241 IRNN 244
Cdd:cd03224 219 LLAD 222
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-252 |
3.41e-57 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 182.49 E-value: 3.41e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQI--- 77
Cdd:COG1127 1 MSEPMIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKELyel 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 78 -ARMGVVrtFQHVRLFREMTVIENllVA----QHQQLKsglfsgllktpafrraHSEALDRAATWLERINLLQHANRQAG 152
Cdd:COG1127 81 rRRIGML--FQGGALFDSLTVFEN--VAfplrEHTDLS----------------EAEIRELVLEKLELVGLPGAADKMPS 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 153 NLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTP 232
Cdd:COG1127 141 ELSGGMRKRVALARALALDPEILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKI 220
|
250 260
....*....|....*....|.
gi 1821658505 233 LANGTPEQIRNNPD-VIRAYL 252
Cdd:COG1127 221 IAEGTPEELLASDDpWVRQFL 241
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
6-254 |
5.65e-57 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 181.70 E-value: 5.65e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVVRT 85
Cdd:TIGR04406 2 LVAENLIKSYKKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERARLGIGYL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 86 FQHVRLFREMTVIENLLVAQHQQLKSglfsgllkTPAFRRAHSEALdraatwLERINLLQHANRQAGNLAYGDQRRLEIA 165
Cdd:TIGR04406 82 PQEASIFRKLTVEENIMAVLEIRKDL--------DRAEREERLEAL------LEEFQISHLRDNKAMSLSGGERRRVEIA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 166 RCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNP 245
Cdd:TIGR04406 148 RALATNPKFILLDEPFAGVDPIAVGDIKKIIKHLKE-RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEIVANE 226
|
....*....
gi 1821658505 246 DVIRAYLGE 254
Cdd:TIGR04406 227 KVRRVYLGE 235
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
6-255 |
1.39e-56 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 180.64 E-value: 1.39e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVVrt 85
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRRIGYV-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 86 FQHVRLFREMTVIENLLvaqhqqlksgLFSGLLKTPAfrrahSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIA 165
Cdd:COG1131 79 PQEPALYPDLTVRENLR----------FFARLYGLPR-----KEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 166 RCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNP 245
Cdd:COG1131 144 LALLHDPELLILDEPTSGLDPEARRELWELLRELAA-EGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKARL 222
|
250
....*....|..
gi 1821658505 246 --DVIRAYLGEA 255
Cdd:COG1131 223 leDVFLELTGEE 234
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
6-247 |
2.21e-49 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 162.29 E-value: 2.21e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGL-PGQQIA---RMG 81
Cdd:cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLsEAELYRlrrRMG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 82 VVrtFQHVRLFREMTVIENllVA----QHQQLKsglfsgllktpafrraHSEALDRAATWLERINLLQHANRQAGNLAYG 157
Cdd:cd03261 81 ML--FQSGALFDSLTVFEN--VAfplrEHTRLS----------------EEEIREIVLEKLEAVGLRGAEDLYPAELSGG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 158 DQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGT 237
Cdd:cd03261 141 MKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGT 220
|
250
....*....|..
gi 1821658505 238 PEQIRN--NPDV 247
Cdd:cd03261 221 PEELRAsdDPLV 232
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
5-244 |
2.26e-49 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 162.33 E-value: 2.26e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 5 LLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVVr 84
Cdd:COG4555 1 MIEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQIGVL- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 85 tFQHVRLFREMTVIENLLvaqhqqlksgLFSgllktPAFRRAHSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEI 164
Cdd:COG4555 80 -PDERGLYDRLTVRENIR----------YFA-----ELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVAL 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 165 ARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNN 244
Cdd:COG4555 144 ARALVHDPKVLLLDEPTNGLDVMARRLLREILRALKK-EGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREE 222
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-251 |
3.07e-49 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 162.18 E-value: 3.07e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLeGLPGQQIA-- 78
Cdd:COG1121 2 MMMPAIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPP-RRARRRIGyv 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 79 --RMGVVRTFQhvrlfreMTVIEnlLVAqhqqlkSGLFSgllKTPAFRRAHSEALDRAATWLERINLLQHANRQAGNLAY 156
Cdd:COG1121 81 pqRAEVDWDFP-------ITVRD--VVL------MGRYG---RRGLFRRPSRADREAVDEALERVGLEDLADRPIGELSG 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 157 GDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELrNHHNTTILLIEHDMKLVMGISDRIYVVNqGTPLANG 236
Cdd:COG1121 143 GQQQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLREL-RREGKTILVVTHDLGAVREYFDRVLLLN-RGLVAHG 220
|
250
....*....|....*
gi 1821658505 237 TPEQIRNNPDVIRAY 251
Cdd:COG1121 221 PPEEVLTPENLSRAY 235
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-245 |
5.74e-49 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 164.50 E-value: 5.74e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQiaR- 79
Cdd:COG3842 1 MAMPALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLPPEK--Rn 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 80 MGVVrtFQHVRLFREMTVIENllVAqhqqlksglFsGL--LKTPAfrrahSEALDRAATWLERINLLQHANRQAGNLAYG 157
Cdd:COG3842 79 VGMV--FQDYALFPHLTVAEN--VA---------F-GLrmRGVPK-----AEIRARVAELLELVGLEGLADRYPHQLSGG 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 158 DQRRLEIARCMVTQPAILMLDEPAAGLNPKeTKEldELIVELRNHH---NTTILLIEHDMKLVMGISDRIYVVNQGTPLA 234
Cdd:COG3842 140 QQQRVALARALAPEPRVLLLDEPLSALDAK-LRE--EMREELRRLQrelGITFIYVTHDQEEALALADRIAVMNDGRIEQ 216
|
250
....*....|.
gi 1821658505 235 NGTPEQIRNNP 245
Cdd:COG3842 217 VGTPEEIYERP 227
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
16-250 |
3.85e-48 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 158.65 E-value: 3.85e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 16 GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARM-GVVrtFQHVR--LF 92
Cdd:COG1122 12 GGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLRELRRKvGLV--FQNPDdqLF 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 93 rEMTVIENllVAqhqqlksglFsGLLktpAFRRAHSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQP 172
Cdd:COG1122 90 -APTVEED--VA---------F-GPE---NLGLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEP 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1821658505 173 AILMLDEPAAGLNPKETKELDELIVELrNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNPDVIRA 250
Cdd:COG1122 154 EVLVLDEPTAGLDPRGRRELLELLKRL-NKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSDYELLEE 230
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
6-242 |
1.25e-45 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 152.27 E-value: 1.25e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGL--LAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVV 83
Cdd:cd03263 1 LQIRNLTKTYKKGtkPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 84 rtFQHVRLFREMTVIENLLVaqHQQLKsglfsGLLKTPAfrRAHSEALdraatwLERINLLQHANRQAGNLAYGDQRRLE 163
Cdd:cd03263 81 --PQFDALFDELTVREHLRF--YARLK-----GLPKSEI--KEEVELL------LRVLGLTDKANKRARTLSGGMKRKLS 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1821658505 164 IARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRnhHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIR 242
Cdd:cd03263 144 LAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR--KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
6-230 |
6.52e-45 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 148.70 E-value: 6.52e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVVrt 85
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYL-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 86 FQHVRLFREMTVIENLlvaqhqqlksgLFSGllktpafrrahsealdraatwlerinllqhanrqagnlayGDQRRLEIA 165
Cdd:cd03230 79 PEEPSLYENLTVRENL-----------KLSG----------------------------------------GMKQRLALA 107
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1821658505 166 RCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:cd03230 108 QALLHDPELLILDEPTSGLDPESRREFWELLRELKK-EGKTILLSSHILEEAERLCDRVAILNNG 171
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
8-242 |
1.09e-44 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 149.83 E-value: 1.09e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 8 VSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVVrtFQ 87
Cdd:cd03265 3 VENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIV--FQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 88 HVRLFREMTVIENLLVaqhqqlksglFSGLLKTPAFRRAhsealDRAATWLERINLLQHANRQAGNLAYGDQRRLEIARC 167
Cdd:cd03265 81 DLSVDDELTGWENLYI----------HARLYGVPGAERR-----ERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARS 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1821658505 168 MVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIR 242
Cdd:cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
5-253 |
2.78e-43 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 146.68 E-value: 2.78e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 5 LLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLeGLPGQQIA----RM 80
Cdd:COG1126 1 MIEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDL-TDSKKDINklrrKV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 81 GVVrtFQHVRLFREMTVIENLLVAQHQQLKsglfsgllktpafrRAHSEALDRAATWLERINLLQHANRQAGNLAYGDQR 160
Cdd:COG1126 80 GMV--FQQFNLFPHLTVLENVTLAPIKVKK--------------MSKAEAEERAMELLERVGLADKADAYPAQLSGGQQQ 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 161 RLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHnTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQ 240
Cdd:COG1126 144 RVAIARALAMEPKVMLFDEPTSALDPELVGEVLDVMRDLAKEG-MTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEE 222
|
250
....*....|....*
gi 1821658505 241 IRNNP--DVIRAYLG 253
Cdd:COG1126 223 FFENPqhERTRAFLS 237
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
6-245 |
3.31e-43 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 146.23 E-value: 3.31e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPgqqIARMGVVRT 85
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP---PHKRPVNTV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 86 FQHVRLFREMTVIENllVAQHQQLKsglfsgllktpafRRAHSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIA 165
Cdd:cd03300 78 FQNYALFPHLTVFEN--IAFGLRLK-------------KLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIA 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 166 RCMVTQPAILMLDEPAAGLNPKETKELDeliVELRNHHN---TTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIR 242
Cdd:cd03300 143 RALVNEPKVLLLDEPLGALDLKLRKDMQ---LELKRLQKelgITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIY 219
|
...
gi 1821658505 243 NNP 245
Cdd:cd03300 220 EEP 222
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
6-230 |
6.97e-43 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 144.94 E-value: 6.97e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGG----LLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIAR-- 79
Cdd:cd03255 1 IELKNLSKTYGGggekVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAfr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 80 ---MGVVrtFQHVRLFREMTVIENLLVAQHqqlksglFSGLLKTpafrrahsEALDRAATWLERINLLQHANRQAGNLAY 156
Cdd:cd03255 81 rrhIGFV--FQSFNLLPDLTALENVELPLL-------LAGVPKK--------ERRERAEELLERVGLGDRLNHYPSELSG 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1821658505 157 GDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVmGISDRIYVVNQG 230
Cdd:cd03255 144 GQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA-EYADRIIELRDG 216
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
7-230 |
9.84e-43 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 144.60 E-value: 9.84e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 7 SVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGqqiaRMGVVRTF 86
Cdd:cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERK----RIGYVPQR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 87 QHV-RLFReMTVIEnlLVAqhqqlkSGLFSGLLKTPAFRRAHSEALDRAatwLERINLLQHANRQAGNLAYGDQRRLEIA 165
Cdd:cd03235 77 RSIdRDFP-ISVRD--VVL------MGLYGHKGLFRRLSKADKAKVDEA---LERVGLSELADRQIGELSGGQQQRVLLA 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1821658505 166 RCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:cd03235 145 RALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLGLVLEYFDRVLLLNRT 208
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
6-241 |
1.48e-42 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 145.02 E-value: 1.48e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFG-GLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQI----ARM 80
Cdd:cd03256 1 IEVENLSKTYPnGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALrqlrRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 81 GVVrtFQHVRLFREMTVIENLLV---AQHQQLKSglfsgllktpAFRRAHSEALDRAATWLERINLLQHANRQAGNLAYG 157
Cdd:cd03256 81 GMI--FQQFNLIERLSVLENVLSgrlGRRSTWRS----------LFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 158 DQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGT 237
Cdd:cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228
|
....
gi 1821658505 238 PEQI 241
Cdd:cd03256 229 PAEL 232
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-230 |
1.56e-42 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 150.95 E-value: 1.56e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQ--HLEGlPGQQIA 78
Cdd:COG3845 1 MMPPALELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKpvRIRS-PRDAIA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 79 R-MGVVrtFQHVRLFREMTVIENLLVaqhqqlksglfsGLLKTPAFRRAHSEALDRAATWLERINLLQHANRQAGNLAYG 157
Cdd:COG3845 80 LgIGMV--HQHFMLVPNLTVAENIVL------------GLEPTKGGRLDRKAARARIRELSERYGLDVDPDAKVEDLSVG 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1821658505 158 DQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:COG3845 146 EQQRVEILKALYRGARILILDEPTAVLTPQEADELFEILRRLAA-EGKSIIFITHKLREVMAIADRVTVLRRG 217
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-245 |
2.11e-42 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 150.82 E-value: 2.11e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRF-----GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQ 75
Cdd:COG1123 256 AAEPLLEVRNLSKRYpvrgkGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRR 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 76 QIA----RMGVVrtFQHVR--LFREMTVIENLLVAQHQQlksGLFSGllktpafrrahSEALDRAATWLERINL-LQHAN 148
Cdd:COG1123 336 SLRelrrRVQMV--FQDPYssLNPRMTVGDIIAEPLRLH---GLLSR-----------AERRERVAELLERVGLpPDLAD 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 149 RQAGNLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVN 228
Cdd:COG1123 400 RYPHELSGGQRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMY 479
|
250
....*....|....*..
gi 1821658505 229 QGTPLANGTPEQIRNNP 245
Cdd:COG1123 480 DGRIVEDGPTEEVFANP 496
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
2-226 |
2.21e-42 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 150.55 E-value: 2.21e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 2 SQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMG 81
Cdd:COG1129 1 AEPLLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRDAQAAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 82 VVRTFQHVRLFREMTVIENLLVAqHQQLKSGLFSgllktpafrraHSEALDRAATWLERINLLQHANRQAGNLAYGDQRR 161
Cdd:COG1129 81 IAIIHQELNLVPNLSVAENIFLG-REPRRGGLID-----------WRAMRRRARELLARLGLDIDPDTPVGDLSVAQQQL 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1821658505 162 LEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYV 226
Cdd:COG1129 149 VEIARALSRDARVLILDEPTASLTEREVERLFRIIRRLKA-QGVAIIYISHRLDEVFEIADRVTV 212
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
4-250 |
4.84e-42 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 143.66 E-value: 4.84e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 4 PLLSVSGLMMRF-GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQI----A 78
Cdd:COG3638 1 PMLELRNLSKRYpGGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRALrrlrR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 79 RMGVVrtFQHVRLFREMTVIENLLvaqhqqlkSGLFS--GLLKTpAFRRAHSEALDRAATWLERINLLQHANRQAGNLAY 156
Cdd:COG3638 81 RIGMI--FQQFNLVPRLSVLTNVL--------AGRLGrtSTWRS-LLGLFPPEDRERALEALERVGLADKAYQRADQLSG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 157 GDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANG 236
Cdd:COG3638 150 GQQQRVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGLRDGRVVFDG 229
|
250
....*....|....
gi 1821658505 237 TPEQIrnNPDVIRA 250
Cdd:COG3638 230 PPAEL--TDAVLRE 241
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
5-241 |
6.21e-42 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 143.65 E-value: 6.21e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 5 LLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIAR-MGVV 83
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRELARrIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 84 rtFQHVRLFREMTVIEnlLVAQ----HQqlksglfsgllktPAFRRAHSEALDRAATWLERINLLQHANRQAGNLAYGDQ 159
Cdd:COG1120 81 --PQEPPAPFGLTVRE--LVALgrypHL-------------GLFGRPSAEDREAVEEALERTGLEHLADRPVDELSGGER 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 160 RRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239
Cdd:COG1120 144 QRVLIARALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPE 223
|
..
gi 1821658505 240 QI 241
Cdd:COG1120 224 EV 225
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
20-231 |
1.53e-41 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 141.45 E-value: 1.53e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARM-GVVrtFQHVR--LFREmT 96
Cdd:cd03225 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKvGLV--FQNPDdqFFGP-T 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 97 VIENLLVA-QHQQLKsglfsgllktpafrraHSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPAIL 175
Cdd:cd03225 93 VEEEVAFGlENLGLP----------------EEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDIL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1821658505 176 MLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQGT 231
Cdd:cd03225 157 LLDEPTAGLDPAGRRELLELLKKLKA-EGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
6-236 |
2.79e-41 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 140.73 E-value: 2.79e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQiARMGVVrt 85
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER-RNIGMV-- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 86 FQHVRLFREMTVIENLLvaqhqqlkSGLFSGLLKTPAFRRAHSEALdraatwlERINLLQHANRQAGNLAYGDQRRLEIA 165
Cdd:cd03259 78 FQDYALFPHLTVAENIA--------FGLKLRGVPKAEIRARVRELL-------ELVGLEGLLNRYPHELSGGQQQRVALA 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1821658505 166 RCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANG 236
Cdd:cd03259 143 RALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
6-243 |
3.62e-41 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 142.94 E-value: 3.62e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARM----G 81
Cdd:COG4152 2 LELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPEDRRRIGYLpeerG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 82 vvrtfqhvrLFREMTVIENLL-VAqhqQLKsglfsGLLKtpafrrahSEALDRAATWLERINLLQHANRQAGNLAYGDQR 160
Cdd:COG4152 82 ---------LYPKMKVGEQLVyLA---RLK-----GLSK--------AEAKRRADEWLERLGLGDRANKKVEELSKGNQQ 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 161 RLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQ 240
Cdd:COG4152 137 KVQLIAALLHDPELLILDEPFSGLDPVNVELLKDVIRELAA-KGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDE 215
|
...
gi 1821658505 241 IRN 243
Cdd:COG4152 216 IRR 218
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-226 |
5.00e-41 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 141.38 E-value: 5.00e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRF----GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPgqq 76
Cdd:COG1116 3 AAAPALELRGVSKRFptggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPG--- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 77 iARMGVVrtFQHVRLFREMTVIENLLVAQHQQlksglfsgllktpafRRAHSEALDRAATWLERINLLQHANRQAGNLAY 156
Cdd:COG1116 80 -PDRGVV--FQEPALLPWLTVLDNVALGLELR---------------GVPKAERRERARELLELVGLAGFEDAYPHQLSG 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1821658505 157 GDQRRLEIARCMVTQPAILMLDEPAAGLNPkETKE-LDELIVELRNHHNTTILLIEHDMK--LVMgiSDRIYV 226
Cdd:COG1116 142 GMRQRVAIARALANDPEVLLMDEPFGALDA-LTRErLQDELLRLWQETGKTVLFVTHDVDeaVFL--ADRVVV 211
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
3-230 |
5.68e-41 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 140.18 E-value: 5.68e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 3 QPLLSVSGLMMRFG----GLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIA 78
Cdd:COG1136 2 SPLLELRNLTKSYGtgegEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERELA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 79 RM-----GVVrtFQHVRLFREMTVIENLLVAQhqqlksgLFSGllktpafrRAHSEALDRAATWLERINLLQHANRQAGN 153
Cdd:COG1136 82 RLrrrhiGFV--FQFFNLLPELTALENVALPL-------LLAG--------VSRKERRERARELLERVGLGDRLDHRPSQ 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1821658505 154 LAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLvMGISDRIYVVNQG 230
Cdd:COG1136 145 LSGGQQQRVAIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPEL-AARADRVIRLRDG 220
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
8-245 |
4.32e-40 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 138.63 E-value: 4.32e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 8 VSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQiARMGVVrtFQ 87
Cdd:cd03296 5 VRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE-RNVGFV--FQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 88 HVRLFREMTVIENllVAqhqqlksglFsGLLKTPAFRRAHSEALD-RAATWLERINLLQHANRQAGNLAYGDQRRLEIAR 166
Cdd:cd03296 82 HYALFRHMTVFDN--VA---------F-GLRVKPRSERPPEAEIRaKVHELLKLVQLDWLADRYPAQLSGGQRQRVALAR 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1821658505 167 CMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNP 245
Cdd:cd03296 150 ALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHP 228
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
1-245 |
5.22e-40 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 141.05 E-value: 5.22e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSqplLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLE-GLPGQQiAR 79
Cdd:COG1118 1 MS---IEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLFtNLPPRE-RR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 80 MGVVrtFQHVRLFREMTVIENllVAqhqqlksglFsGLLKTPAFRRahsEALDRAATWLERINLLQHANRQAGNLAYGDQ 159
Cdd:COG1118 77 VGFV--FQHYALFPHMTVAEN--IA---------F-GLRVRPPSKA---EIRARVEELLELVQLEGLADRYPSQLSGGQR 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 160 RRLEIARCMVTQPAILMLDEPAAGLNPKETKELDElivELRNHH---NTTILLIEHDMKLVMGISDRIYVVNQGTPLANG 236
Cdd:COG1118 140 QRVALARALAVEPEVLLLDEPFGALDAKVRKELRR---WLRRLHdelGGTTVFVTHDQEEALELADRVVVMNQGRIEQVG 216
|
....*....
gi 1821658505 237 TPEQIRNNP 245
Cdd:COG1118 217 TPDEVYDRP 225
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
5-254 |
6.92e-40 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 138.10 E-value: 6.92e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 5 LLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVVR 84
Cdd:PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 85 TFQHVRLFREMTVIENLLVAqhQQLKSGLFSgllktpafrrahSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEI 164
Cdd:PRK10895 83 LPQEASIFRRLSVYDNLMAV--LQIRDDLSA------------EQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEI 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 165 ARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNN 244
Cdd:PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227
|
250
....*....|
gi 1821658505 245 PDVIRAYLGE 254
Cdd:PRK10895 228 EHVKRVYLGE 237
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
6-226 |
8.17e-40 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 137.22 E-value: 8.17e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGG----LLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPgqqiARMG 81
Cdd:cd03293 1 LEVRNVSKTYGGgggaVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPG----PDRG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 82 VVrtFQHVRLFREMTVIENLLVAqhqqLKsglfsgllktpAFRRAHSEALDRAATWLERINLLQHANRQAGNLAYGDQRR 161
Cdd:cd03293 77 YV--FQQDALLPWLTVLDNVALG----LE-----------LQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQR 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1821658505 162 LEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYV 226
Cdd:cd03293 140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVV 204
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
6-231 |
6.82e-39 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 133.47 E-value: 6.82e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHL---EGLPGQQIARMGV 82
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLtdlEDELPPLRRRIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 83 VrtFQHVRLFREMTVIENLLVAqhqqlksglFSGllktpafrrahsealdraatwlerinllqhanrqagnlayGDQRRL 162
Cdd:cd03229 81 V--FQDFALFPHLTVLENIALG---------LSG----------------------------------------GQQQRV 109
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1821658505 163 EIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGT 231
Cdd:cd03229 110 ALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
6-241 |
1.69e-38 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 133.85 E-value: 1.69e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYK-----PTGGTIMLRDQHLEGLPGQQIA-- 78
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDlipgaPDEGEVLLDGKDIYDLDVDVLElr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 79 -RMGVVrtFQHVRLFReMTVIENLLVAQHQQlksglfsGLLKTPAFRRAHSEALDRAATWlERINLLQHANRQAGnlayG 157
Cdd:cd03260 81 rRVGMV--FQKPNPFP-GSIYDNVAYGLRLH-------GIKLKEELDERVEEALRKAALW-DEVKDRLHALGLSG----G 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 158 DQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRnhHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGT 237
Cdd:cd03260 146 QQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELK--KEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223
|
....
gi 1821658505 238 PEQI 241
Cdd:cd03260 224 TEQI 227
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
6-252 |
1.83e-38 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 133.80 E-value: 1.83e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVVRT 85
Cdd:TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 86 FQHVRLFREMTVIENLLVaqhqqlksglfsGLlktPAFRRAHSEALDRAatwLERINLL-QHANRQAGNLAYGDQRRLEI 164
Cdd:TIGR03410 81 PQGREIFPRLTVEENLLT------------GL---AALPRRSRKIPDEI---YELFPVLkEMLGRRGGDLSGGQQQQLAI 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 165 ARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIrnN 244
Cdd:TIGR03410 143 ARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL--D 220
|
....*...
gi 1821658505 245 PDVIRAYL 252
Cdd:TIGR03410 221 EDKVRRYL 228
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
6-230 |
3.27e-37 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 130.34 E-value: 3.27e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGlPGQQI----ARMG 81
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTD-DKKNInelrQKVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 82 VVrtFQHVRLFREMTVIENLLVAQHQQLKsglfsgllktpafrRAHSEALDRAATWLERINLLQHANRQAGNLAYGDQRR 161
Cdd:cd03262 80 MV--FQQFNLFPHLTVLENITLAPIKVKG--------------MSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQR 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1821658505 162 LEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRnHHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:cd03262 144 VAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLA-EEGMTMVVVTHEMGFAREVADRVIFMDDG 211
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
21-182 |
4.36e-37 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 127.76 E-value: 4.36e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 21 VNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQI-ARMGVVrtFQHVRLFREMTVIE 99
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLrKEIGYV--FQDPQLFPRLTVRE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 100 NLLVaqhqqlkSGLFSGLLKTPAFRRAhsealDRAATWLERINLL-QHANRQAGNLAYGDQRRLEIARCMVTQPAILMLD 178
Cdd:pfam00005 79 NLRL-------GLLLKGLSKREKDARA-----EEALEKLGLGDLAdRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLD 146
|
....
gi 1821658505 179 EPAA 182
Cdd:pfam00005 147 EPTA 150
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
7-236 |
1.23e-36 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 127.55 E-value: 1.23e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 7 SVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIAR-MGVVrt 85
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARkIAYV-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 86 fqhvrlfremtvienllvaqhqqlksglfsgllktpafrrahsealdraATWLERINLLQHANRQAGNLAYGDQRRLEIA 165
Cdd:cd03214 79 -------------------------------------------------PQALELLGLAHLADRPFNELSGGERQRVLLA 109
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1821658505 166 RCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANG 236
Cdd:cd03214 110 RALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
12-230 |
2.81e-36 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 127.86 E-value: 2.81e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 12 MMRF--------GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIA----R 79
Cdd:COG2884 1 MIRFenvskrypGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPylrrR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 80 MGVVrtFQHVRLFREMTVIENLLVAQHqqlksglfsgllktpAFRRAHSEALDRAATWLERINLLQHANRQAGNLAYGDQ 159
Cdd:COG2884 81 IGVV--FQDFRLLPDRTVYENVALPLR---------------VTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQ 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1821658505 160 RRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELrNHHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:COG2884 144 QRVAIARALVNRPELLLADEPTGNLDPETSWEIMELLEEI-NRRGTTVLIATHDLELVDRMPKRVLELEDG 213
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
14-245 |
9.35e-36 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 128.14 E-value: 9.35e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 14 RFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQI-----ARMGVVrtFQH 88
Cdd:cd03294 33 KTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELrelrrKKISMV--FQS 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 89 VRLFREMTVIENL---LVAQHQqlksglfsgllktpafrrAHSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIA 165
Cdd:cd03294 111 FALLPHRTVLENVafgLEVQGV------------------PRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLA 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 166 RCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNP 245
Cdd:cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
6-236 |
1.57e-35 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 125.86 E-value: 1.57e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVVRT 85
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 86 fqhvrLFREMTVIENLL-VAQHQQLKsglfsgllktpafrraHSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEI 164
Cdd:cd03269 81 -----LYPKMKVIDQLVyLAQLKGLK----------------KEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQF 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1821658505 165 ARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANG 236
Cdd:cd03269 140 IAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
6-236 |
3.98e-35 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 124.64 E-value: 3.98e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLrDQHLEGLPGQQIARMGVVRT 85
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITF-DGKSYQKNIEALRRIGALIE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 86 FQhvRLFREMTVIENLLVaqhqqlkSGLFSGLLKtpafrrahsEALDRAatwLERINLLQHANRQAGNLAYGDQRRLEIA 165
Cdd:cd03268 80 AP--GFYPNLTARENLRL-------LARLLGIRK---------KRIDEV---LDVVGLKDSAKKKVKGFSLGMKQRLGIA 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1821658505 166 RCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANG 236
Cdd:cd03268 139 LALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
3-250 |
7.37e-35 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 130.41 E-value: 7.37e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 3 QPLLSVSGLMMRF--GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTG---GTIMLRDQHLEGLPGQQI 77
Cdd:COG1123 2 TPLLEVRDLSVRYpgGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGGrisGEVLLDGRDLLELSEALR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 78 AR-MGVVrtFQHVrlfreMTVIENLLVAQhqQLKSGLFsgllktpAFRRAHSEALDRAATWLERINLLQHANRQAGNLAY 156
Cdd:COG1123 82 GRrIGMV--FQDP-----MTQLNPVTVGD--QIAEALE-------NLGLSRAEARARVLELLEAVGLERRLDRYPHQLSG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 157 GDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANG 236
Cdd:COG1123 146 GQRQRVAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDG 225
|
250
....*....|....
gi 1821658505 237 TPEQIRNNPDVIRA 250
Cdd:COG1123 226 PPEEILAAPQALAA 239
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
3-212 |
1.06e-34 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 124.81 E-value: 1.06e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 3 QPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPT-GGTIMLRDQHLEGLPGQQI-ARM 80
Cdd:COG1119 1 DPLLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTyGNDVRLFGERRGGEDVWELrKRI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 81 GVVRTFQHVRLFREMTVIENLLvaqhqqlkSGLFS--GLlktpaFRRAHSEALDRAATWLERINLLQHANRQAGNLAYGD 158
Cdd:COG1119 81 GLVSPALQLRFPRDETVLDVVL--------SGFFDsiGL-----YREPTDEQRERARELLELLGLAHLADRPFGTLSQGE 147
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1821658505 159 QRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEH 212
Cdd:COG1119 148 QRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTH 201
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-253 |
1.96e-34 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 129.13 E-value: 1.96e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARM 80
Cdd:PRK09700 1 MATPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKsglfsgLLKTPAFRraHSEALDRAATWLERINLLQHANRQAGNLAYGDQR 160
Cdd:PRK09700 81 GIGIIYQELSVIDELTVLENLYIGRHLTKK------VCGVNIID--WREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQ 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 161 RLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQ 240
Cdd:PRK09700 153 MLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231
|
250
....*....|...
gi 1821658505 241 IRNNpDVIRAYLG 253
Cdd:PRK09700 232 VSND-DIVRLMVG 243
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
20-245 |
1.98e-34 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 123.46 E-value: 1.98e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQI----ARMGVVrtFQHVRLFREM 95
Cdd:cd03258 20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELrkarRRIGMI--FQHFNLLSSR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 96 TVIENLLVAqhqqLKsglfsgLLKTP-AFRRAHSEALdraatwLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPAI 174
Cdd:cd03258 98 TVFENVALP----LE------IAGVPkAEIEERVLEL------LELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKV 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1821658505 175 LMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNP 245
Cdd:cd03258 162 LLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANP 232
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-253 |
5.51e-34 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 122.68 E-value: 5.51e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARM 80
Cdd:PRK11614 1 MEKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 81 GVVRTFQHVRLFREMTVIENLLVAqhqqlksGLFsgllktpAFRRAHSEALDRAATWLERinLLQHANRQAGNLAYGDQR 160
Cdd:PRK11614 81 AVAIVPEGRRVFSRMTVEENLAMG-------GFF-------AERDQFQERIKWVYELFPR--LHERRIQRAGTMSGGEQQ 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 161 RLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRnHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQ 240
Cdd:PRK11614 145 MLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLR-EQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDA 223
|
250
....*....|...
gi 1821658505 241 IRNNPDVIRAYLG 253
Cdd:PRK11614 224 LLANEAVRSAYLG 236
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
20-251 |
1.15e-33 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 122.56 E-value: 1.15e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQI----ARMGVVrtFQ---HvRLF 92
Cdd:TIGR04521 20 ALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDITAKKKKKLkdlrKKVGLV--FQfpeH-QLF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 93 rEMTVIE-------NLlvaqhqqlksglfsGLLKtpafrrahSEALDRAATWLERINLLQH-ANRQAGNLAYGDQRRLEI 164
Cdd:TIGR04521 97 -EETVYKdiafgpkNL--------------GLSE--------EEAEERVKEALELVGLDEEyLERSPFELSGGQMRRVAI 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 165 ARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNN 244
Cdd:TIGR04521 154 AGVLAMEPEVLILDEPTAGLDPKGRKEILDLFKRLHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPREVFSD 233
|
....*..
gi 1821658505 245 PDVIRAY 251
Cdd:TIGR04521 234 VDELEKI 240
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1-245 |
1.68e-33 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 124.67 E-value: 1.68e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQiaRM 80
Cdd:PRK09452 10 SLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAEN--RH 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 81 gvVRT-FQHVRLFREMTVIENllVAQHQQLKsglfsgllKTPafrraHSEALDRAATWLERINLLQHANRQAGNLAYGDQ 159
Cdd:PRK09452 88 --VNTvFQSYALFPHMTVFEN--VAFGLRMQ--------KTP-----AAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQ 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 160 RRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239
Cdd:PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPR 230
|
....*.
gi 1821658505 240 QIRNNP 245
Cdd:PRK09452 231 EIYEEP 236
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
4-245 |
1.99e-33 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 124.56 E-value: 1.99e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 4 PLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQ--IARMg 81
Cdd:PRK11607 18 PLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQrpINMM- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 82 vvrtFQHVRLFREMTVIENLLVAQHQQlksglfsgllktpafRRAHSEALDRAATWLERINLLQHANRQAGNLAYGDQRR 161
Cdd:PRK11607 97 ----FQSYALFPHMTVEQNIAFGLKQD---------------KLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 162 LEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQI 241
Cdd:PRK11607 158 VALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237
|
....
gi 1821658505 242 RNNP 245
Cdd:PRK11607 238 YEHP 241
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-241 |
2.37e-33 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 126.20 E-value: 2.37e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYkPTG---GTIMLRDQHLEGLPGQQI 77
Cdd:PRK13549 1 MMEYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGtyeGEIIFEGEELQASNIRDT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 78 ARMGVVRTFQHVRLFREMTVIENllvaqhqqlksgLFSGLLKTPAFRRAHSEALDRAATWLERINLLQHANRQAGNLAYG 157
Cdd:PRK13549 80 ERAGIAIIHQELALVKELSVLEN------------IFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLG 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 158 DQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQG-----TP 232
Cdd:PRK13549 148 QQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKLNEVKAISDTICVIRDGrhigtRP 226
|
....*....
gi 1821658505 233 LANGTPEQI 241
Cdd:PRK13549 227 AAGMTEDDI 235
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
4-213 |
4.16e-33 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 119.51 E-value: 4.16e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 4 PLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVV 83
Cdd:COG4133 1 MMLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLAYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 84 rtFQHVRLFREMTVIENLlvAQHQQLKSGLFSGllktpafrrahsealDRAATWLERINLLQHANRQAGNLAYGDQRRLE 163
Cdd:COG4133 81 --GHADGLKPELTVRENL--RFWAALYGLRADR---------------EAIDEALEAVGLAGLADLPVRQLSAGQKRRVA 141
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1821658505 164 IARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHD 213
Cdd:COG4133 142 LARLLLSPAPLWLLDEPFTALDAAGVALLAELIAAHLA-RGGAVLLTTHQ 190
|
|
| proV |
TIGR01186 |
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine ... |
16-253 |
7.28e-33 |
|
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130254 [Multi-domain] Cd Length: 363 Bit Score: 122.65 E-value: 7.28e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 16 GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI-----MLRDQHLEGLPGQQIARMGVVrtFQHVR 90
Cdd:TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIfidgeNIMKQSPVELREVRRKKIGMV--FQQFA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 91 LFREMTVIENLlvaqhqqlksGLFSGLLKTPAFRRAhsealDRAATWLERINLLQHANRQAGNLAYGDQRRLEIARCMVT 170
Cdd:TIGR01186 82 LFPHMTILQNT----------SLGPELLGWPEQERK-----EKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 171 QPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNP--DVI 248
Cdd:TIGR01186 147 EPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPanEYV 226
|
....*
gi 1821658505 249 RAYLG 253
Cdd:TIGR01186 227 EEFIG 231
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
5-251 |
9.65e-33 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 119.84 E-value: 9.65e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 5 LLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARM-GVV 83
Cdd:COG4559 1 MLEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELARRrAVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 84 RtfQHVRL---FremTVIEnlLVAQhqqlksGLFSGllktpAFRRAHSEALDRAAtwLERINLLQHANRQAGNLAYGDQR 160
Cdd:COG4559 81 P--QHSSLafpF---TVEE--VVAL------GRAPH-----GSSAAQDRQIVREA--LALVGLAHLAGRSYQTLSGGEQQ 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 161 RLEIARCMV-------TQPAILMLDEPAAGLNPKETKELDELIVELRnHHNTTILLIEHDMKLVMGISDRIYVVNQGTPL 233
Cdd:COG4559 141 RVQLARVLAqlwepvdGGPRWLFLDEPTSALDLAHQHAVLRLARQLA-RRGGGVVAVLHDLNLAAQYADRILLLHQGRLV 219
|
250
....*....|....*...
gi 1821658505 234 ANGTPEQIRNNPDVIRAY 251
Cdd:COG4559 220 AQGTPEEVLTDELLERVY 237
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
15-245 |
2.32e-32 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 120.96 E-value: 2.32e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 15 FGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQiARMGVVrtFQHVRLFRE 94
Cdd:PRK10851 12 FGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD-RKVGFV--FQHYALFRH 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 95 MTVIENLLVaqhqqlksglfsGLLKTPAFRRAHSEALDRAAT-WLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPA 173
Cdd:PRK10851 89 MTVFDNIAF------------GLTVLPRRERPNAAAIKAKVTqLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQ 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1821658505 174 ILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNP 245
Cdd:PRK10851 157 ILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREP 228
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
6-230 |
3.11e-32 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 117.29 E-value: 3.11e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELrEREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVVRt 85
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 86 fQHVRLFREMTVIENLLvaqhqqlksglFSGLLKTPAFRRAHSEAlDRAatwLERINLLQHANRQAGNLAYGDQRRLEIA 165
Cdd:cd03264 79 -QEFGVYPNFTVREFLD-----------YIAWLKGIPSKEVKARV-DEV---LELVNLGDRAKKKIGSLSGGMRRRVGIA 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1821658505 166 RCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhhNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:cd03264 143 QALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAVLNKG 205
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
23-245 |
3.29e-32 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 117.82 E-value: 3.29e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 23 NVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQiARMGVVrtFQHVRLFREMTVIENLL 102
Cdd:cd03299 17 NVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEK-RDISYV--PQNYALFPHMTVYKNIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 103 VaqhqqlksglfsGLLKTPAFRRAHSEALDRAATWLERINLLqhaNRQAGNLAYGDQRRLEIARCMVTQPAILMLDEPAA 182
Cdd:cd03299 94 Y------------GLKKRKVDKKEIERKVLEIAEMLGIDHLL---NRKPETLSGGEQQRVAIARALVVNPKILLLDEPFS 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1821658505 183 GLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNP 245
Cdd:cd03299 159 ALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
5-230 |
3.43e-32 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 117.61 E-value: 3.43e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 5 LLSVSGLMMRF----GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARM 80
Cdd:cd03257 1 LLEVKNLSVSFptggGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 81 GvvRTFQHVrlFRE--------MTVIEnllvaqhqQLKSGL-FSGLLKTPAFRRAHSEALdraatwLERINLL-QHANRQ 150
Cdd:cd03257 81 R--KEIQMV--FQDpmsslnprMTIGE--------QIAEPLrIHGKLSKKEARKEAVLLL------LVGVGLPeEVLNRY 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 151 AGNLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:cd03257 143 PHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAG 222
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-245 |
3.44e-32 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 120.56 E-value: 3.44e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQplLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQiaR- 79
Cdd:COG3839 1 MAS--LELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPKD--Rn 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 80 MGVVrtFQHVRLFREMTVIENLLVAqhqqLKsglfsgLLKTPAfrrahSEALDRAATWLERINLLQHANRQAGNLAYGDQ 159
Cdd:COG3839 77 IAMV--FQSYALYPHMTVYENIAFP----LK------LRKVPK-----AEIDRRVREAAELLGLEDLLDRKPKQLSGGQR 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 160 RRLEIARCMVTQPAILMLDEPAAGLNPKetkeL-DELIVELRNHH---NTTILLIEHDMKLVMGISDRIYVVNQGTPLAN 235
Cdd:COG3839 140 QRVALGRALVREPKVFLLDEPLSNLDAK----LrVEMRAEIKRLHrrlGTTTIYVTHDQVEAMTLADRIAVMNDGRIQQV 215
|
250
....*....|
gi 1821658505 236 GTPEQIRNNP 245
Cdd:COG3839 216 GTPEELYDRP 225
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
16-254 |
3.59e-32 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 117.79 E-value: 3.59e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 16 GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIAR-MGVVrtFQHVRLFRE 94
Cdd:cd03295 12 GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRkIGYV--IQQIGLFPH 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 95 MTVIENLlvaqhqqlksGLFSGLLKTPAFRRAhsealDRAATWLERINL--LQHANRQAGNLAYGDQRRLEIARCMVTQP 172
Cdd:cd03295 90 MTVEENI----------ALVPKLLKWPKEKIR-----ERADELLALVGLdpAEFADRYPHELSGGQQQRVGVARALAADP 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 173 AILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNP--DVIRA 250
Cdd:cd03295 155 PLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPanDFVAE 234
|
....
gi 1821658505 251 YLGE 254
Cdd:cd03295 235 FVGA 238
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
6-231 |
5.02e-32 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 115.22 E-value: 5.02e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVVRT 85
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 86 FQhvrlfremtvienllvaqhqqlksglfsgllktpafrrahsealdraatwlerinllqhanrqagnLAYGDQRRLEIA 165
Cdd:cd03216 81 YQ------------------------------------------------------------------LSVGERQMVEIA 94
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1821658505 166 RCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQGT 231
Cdd:cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFISHRLDEVFEIADRVTVLRDGR 159
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-251 |
8.80e-32 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 118.75 E-value: 8.80e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARM 80
Cdd:PRK13537 3 MSVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 81 GVVRTFQHvrLFREMTVIENLLVAqhqqlksGLFSGLlktpafrrAHSEALDRAATWLERINLLQHANRQAGNLAYGDQR 160
Cdd:PRK13537 83 GVVPQFDN--LDPDFTVRENLLVF-------GRYFGL--------SAAAARALVPPLLEFAKLENKADAKVGELSGGMKR 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 161 RLEIARCMVTQPAILMLDEPAAGLNPKETkeldELIVE-LRN--HHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGT 237
Cdd:PRK13537 146 RLTLARALVNDPDVLVLDEPTTGLDPQAR----HLMWErLRSllARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGA 221
|
250
....*....|....*..
gi 1821658505 238 PEQIRNNP---DVIRAY 251
Cdd:PRK13537 222 PHALIESEigcDVIEIY 238
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
10-254 |
8.74e-31 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 114.08 E-value: 8.74e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 10 GLMMRFggllavnnvSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPgqqIARMGVVRTFQHV 89
Cdd:COG3840 13 DFPLRF---------DLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALP---PAERPVSMLFQEN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 90 RLFREMTVIENLLVaqhqqlksGLFSGLLKTPAFRRAHSEALdraatwlERINLLQHANRQAGNLAYGDQRRLEIARCMV 169
Cdd:COG3840 81 NLFPHLTVAQNIGL--------GLRPGLKLTAEQRAQVEQAL-------ERVGLAGLLDRLPGQLSGGQRQRVALARCLV 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 170 TQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQI--RNNPDV 247
Cdd:COG3840 146 RKRPILLLDEPFSALDPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALldGEPPPA 225
|
....*..
gi 1821658505 248 IRAYLGE 254
Cdd:COG3840 226 LAAYLGI 232
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
7-231 |
1.29e-30 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 111.57 E-value: 1.29e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 7 SVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIaRMGVVRTF 86
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEEL-RRRIGYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 87 QhvrlfremtvienllvaqhqqlksglFSGllktpafrrahsealdraatwlerinllqhanrqagnlayGDQRRLEIAR 166
Cdd:cd00267 80 Q--------------------------LSG----------------------------------------GQRQRVALAR 93
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1821658505 167 CMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQGT 231
Cdd:cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAE-EGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
1-249 |
1.81e-30 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 113.91 E-value: 1.81e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGL---PGQ-- 75
Cdd:PRK10619 1 MSENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVrdkDGQlk 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 76 -------QIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLksglfsGLLKtpafrrahSEALDRAATWLERINLLQHAN 148
Cdd:PRK10619 81 vadknqlRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL------GLSK--------QEARERAVKYLAKVGIDERAQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 149 -RQAGNLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRnHHNTTILLIEHDMKLVMGISDRIYVV 227
Cdd:PRK10619 147 gKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLA-EEGKTMVVVTHEMGFARHVSSHVIFL 225
|
250 260
....*....|....*....|..
gi 1821658505 228 NQGTPLANGTPEQIRNNPDVIR 249
Cdd:PRK10619 226 HQGKIEEEGAPEQLFGNPQSPR 247
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-216 |
1.92e-30 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 113.30 E-value: 1.92e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRFGG----LLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQ 76
Cdd:COG4181 4 SSAPIIELRGLTKTVGTgageLTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALDEDA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 77 IAR-----MGVVrtFQHVRLFREMTVIENLLVaqhqqlksglfsgllktPAFRRAHSEALDRAATWLERINL---LQHAN 148
Cdd:COG4181 84 RARlrarhVGFV--FQSFQLLPTLTALENVML-----------------PLELAGRRDARARARALLERVGLghrLDHYP 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1821658505 149 RQagnLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKL 216
Cdd:COG4181 145 AQ---LSGGEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPAL 209
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
5-245 |
1.11e-29 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 111.43 E-value: 1.11e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 5 LLSVSGLMMRFG----GLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIAR- 79
Cdd:COG1124 1 MLEVRNLSVSYGqggrRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRKAFRRr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 80 MGVVrtFQHVR--LFREMTVIEnllvaqhqqlksglfsgLLKTPAfrRAH--SEALDRAATWLERINL-LQHANRQAGNL 154
Cdd:COG1124 81 VQMV--FQDPYasLHPRHTVDR-----------------ILAEPL--RIHglPDREERIAELLEQVGLpPSFLDRYPHQL 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 155 AYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLA 234
Cdd:COG1124 140 SGGQRQRVAIARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVE 219
|
250
....*....|.
gi 1821658505 235 NGTPEQIRNNP 245
Cdd:COG1124 220 ELTVADLLAGP 230
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
4-240 |
1.48e-29 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 111.40 E-value: 1.48e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 4 PLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARM-GV 82
Cdd:PRK13548 1 AMLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRrAV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 83 VRtfQHVRLFREMTVIEnlLVAQhqqlksglfsGLLKTPAFRRAHSEALDRAatwLERINLLQHANRQAGNLAYGDQRRL 162
Cdd:PRK13548 81 LP--QHSSLSFPFTVEE--VVAM----------GRAPHGLSRAEDDALVAAA---LAQVDLAHLAGRDYPQLSGGEQQRV 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 163 EIARCMV------TQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANG 236
Cdd:PRK13548 144 QLARVLAqlwepdGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADG 223
|
....
gi 1821658505 237 TPEQ 240
Cdd:PRK13548 224 TPAE 227
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
20-230 |
1.55e-29 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 109.01 E-value: 1.55e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQI-ARMGVVrtFQHVRLFrEMTVI 98
Cdd:cd03228 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLrKNIAYV--PQDPFLF-SGTIR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 99 ENLLvaqhqqlkSGlfsgllktpafrrahsealdraatwlerinllqhanrqagnlayGDQRRLEIARCMVTQPAILMLD 178
Cdd:cd03228 94 ENIL--------SG--------------------------------------------GQRQRIAIARALLRDPPILILD 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1821658505 179 EPAAGLNPKETKELDELIVELRNHHntTILLIEHDMKLVMgISDRIYVVNQG 230
Cdd:cd03228 122 EATSALDPETEALILEALRALAKGK--TVIVIAHRLSTIR-DADRIIVLDDG 170
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
2-252 |
1.77e-29 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 116.02 E-value: 1.77e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 2 SQPLLSVSGLMMRF--GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQI-A 78
Cdd:COG4987 330 GGPSLELEDVSFRYpgAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDLrR 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 79 RMGVVrtFQHVRLFReMTVIENLLV----AQHQQLKsglfsgllktpafrrahsEALDRA--ATWLERI------NLLQH 146
Cdd:COG4987 410 RIAVV--PQRPHLFD-TTLRENLRLarpdATDEELW------------------AALERVglGDWLAALpdgldtWLGEG 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 147 ANRQAGnlayGDQRRLEIARCMVTQPAILMLDEPAAGLNPkETKelDELIVELRNH-HNTTILLIEHDMkLVMGISDRIY 225
Cdd:COG4987 469 GRRLSG----GERRRLALARALLRDAPILLLDEPTEGLDA-ATE--QALLADLLEAlAGRTVLLITHRL-AGLERMDRIL 540
|
250 260
....*....|....*....|....*..
gi 1821658505 226 VVNQGTPLANGTPEQIRNNPDVIRAYL 252
Cdd:COG4987 541 VLEDGRIVEQGTHEELLAQNGRYRQLY 567
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
4-253 |
3.39e-29 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 113.40 E-value: 3.39e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 4 PLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMgVV 83
Cdd:PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR-VA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 84 RTFQHVRLFREMTVIENLLVAQHQQLksGLFSGLlkTPAFRRAHSEALDRAATwlerinlLQHANRQAGNLAYGDQRRLE 163
Cdd:PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHR--SRFDTW--TETDRAAVERAMERTGV-------AQFADRPVTSLSGGERQRVL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 164 IARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIeHDMKLVMGISDRIYVVNQGTPLANGTPEQIRn 243
Cdd:PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAI-HDLDLAARYCDELVLLADGRVRAAGPPADVL- 227
|
250
....*....|
gi 1821658505 244 NPDVIRAYLG 253
Cdd:PRK09536 228 TADTLRAAFD 237
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-213 |
3.48e-29 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 110.72 E-value: 3.48e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQplLSVSGLMMRFGG----LLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGlPGqq 76
Cdd:COG4525 1 MSM--LTVRHVSVRYPGggqpQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTG-PG-- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 77 iARMGVVrtFQHVRLFREMTVIENllVAQHQQLKsglfsGLLKtpAFRRAhsealdRAATWLERINLLQHANRQAGNLAY 156
Cdd:COG4525 76 -ADRGVV--FQKDALLPWLNVLDN--VAFGLRLR-----GVPK--AERRA------RAEELLALVGLADFARRRIWQLSG 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1821658505 157 GDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHD 213
Cdd:COG4525 138 GMRQRVGIARALAADPRFLLMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITHS 194
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
20-248 |
8.41e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 110.14 E-value: 8.41e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHL--EGLPGQQI-ARMGVVRTFQHVRLFREmt 96
Cdd:PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDItdKKVKLSDIrKKVGLVFQYPEYQLFEE-- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 97 VIENLLVAQHQQLksGLFSGLLKTPAFRRAHSEALDRAatwlerinllQHANRQAGNLAYGDQRRLEIARCMVTQPAILM 176
Cdd:PRK13637 100 TIEKDIAFGPINL--GLSEEEIENRVKRAMNIVGLDYE----------DYKDKSPFELSGGQKRRVAIAGVVAMEPKILI 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1821658505 177 LDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNPDVI 248
Cdd:PRK13637 168 LDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETL 239
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
16-230 |
1.06e-28 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 108.26 E-value: 1.06e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 16 GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIA----RMGVVrtFQHVRL 91
Cdd:cd03292 12 NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPylrrKIGVV--FQDFRL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 92 FREMTVIENLLVAQHQQLKSglfsgllktpafrraHSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQ 171
Cdd:cd03292 90 LPDRNVYENVAFALEVTGVP---------------PREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNS 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1821658505 172 PAILMLDEPAAGLNPKETKELDELIVELrNHHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:cd03292 155 PTILIADEPTGNLDPDTTWEIMNLLKKI-NKAGTTVVVATHAKELVDTTRHRVIALERG 212
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
21-254 |
1.07e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 109.92 E-value: 1.07e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 21 VNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQI-----ARMGVVRTFQHVRLFrEM 95
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNlkklrKKVSLVFQFPEAQLF-EN 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 96 TVIENLLVAQHQqlksglfsgllktpaFRRAHSEALDRAATWLERINLLQH-ANRQAGNLAYGDQRRLEIARCMVTQPAI 174
Cdd:PRK13641 102 TVLKDVEFGPKN---------------FGFSEDEAKEKALKWLKKVGLSEDlISKSPFELSGGQMRRVAIAGVMAYEPEI 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 175 LMLDEPAAGLNPKETKELDELIVELRNHHNTTIlLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNPD-VIRAYLG 253
Cdd:PRK13641 167 LCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVI-LVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDKEwLKKHYLD 245
|
.
gi 1821658505 254 E 254
Cdd:PRK13641 246 E 246
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
5-253 |
2.59e-28 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 112.23 E-value: 2.59e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 5 LLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYkPTG---GTIMLRDQHLEGLPGQQIARMG 81
Cdd:TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGtwdGEIYWSGSPLKASNIRDTERAG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKSGlfsgllktpafRRAHSEALDRAATWLERINL-LQHANRQAGNLAYGDQR 160
Cdd:TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGG-----------RMAYNAMYLRAKNLLRELQLdADNVTRPVGDYGGGQQQ 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 161 RLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRnHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANgTPEQ 240
Cdd:TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLK-AHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT-KDMS 226
|
250
....*....|...
gi 1821658505 241 IRNNPDVIRAYLG 253
Cdd:TIGR02633 227 TMSEDDIITMMVG 239
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
17-249 |
3.75e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 108.24 E-value: 3.75e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 17 GLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQI-ARMGVVRTFQHV--RLFR 93
Cdd:PRK13639 14 GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLeVRKTVGIVFQNPddQLFA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 94 EmTVIENllVAqhqqlksglFSGL-LKTPafrraHSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQP 172
Cdd:PRK13639 94 P-TVEED--VA---------FGPLnLGLS-----KEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKP 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1821658505 173 AILMLDEPAAGLNPKETKELDELIVELrNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNPDVIR 249
Cdd:PRK13639 157 EIIVLDEPTSGLDPMGASQIMKLLYDL-NKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIETIR 232
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
6-230 |
4.11e-28 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 106.57 E-value: 4.11e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGqqiARMGVVRT 85
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP---KDRDIAMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 86 FQHVRLFREMTVIENLLVAqhqqLKsglfsgLLKTPafRRAHSEALDRAATWLERINLLQHANRQagnLAYGDQRRLEIA 165
Cdd:cd03301 78 FQNYALYPHMTVYDNIAFG----LK------LRKVP--KDEIDERVREVAELLQIEHLLDRKPKQ---LSGGQRQRVALG 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1821658505 166 RCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:cd03301 143 RAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDG 207
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
3-231 |
4.30e-28 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 106.75 E-value: 4.30e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 3 QPLLSVSGLMMRF-----GG--LLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQH----LEG 71
Cdd:COG4778 2 TTLLEVENLSKTFtlhlqGGkrLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRHDGgwvdLAQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 72 LPGQQIAR-----MGVVRTFQHV--RlfreMTVIEnlLVAQhqqlksglfsgllktPAFRR--AHSEALDRAATWLERIN 142
Cdd:COG4778 82 ASPREILAlrrrtIGYVSQFLRVipR----VSALD--VVAE---------------PLLERgvDREEARARARELLARLN 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 143 LLQHanrqagnL--AY------GDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRnHHNTTILLIEHDM 214
Cdd:COG4778 141 LPER-------LwdLPpatfsgGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAK-ARGTAIIGIFHDE 212
|
250
....*....|....*..
gi 1821658505 215 KLVMGISDRIYVVNQGT 231
Cdd:COG4778 213 EVREAVADRVVDVTPFS 229
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
16-240 |
6.60e-28 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 111.39 E-value: 6.60e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 16 GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPG----QQIARMGvvrtfQHVRL 91
Cdd:COG4988 348 GGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPaswrRQIAWVP-----QNPYL 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 92 FrEMTVIENLLVAQHQqlksglfsgllktpafrrAHSEALDRAatwLERINLLQHANR-----------QAGNLAYGDQR 160
Cdd:COG4988 423 F-AGTIRENLRLGRPD------------------ASDEELEAA---LEAAGLDEFVAAlpdgldtplgeGGRGLSGGQAQ 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 161 RLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHntTILLIEHDMKLVMgISDRIYVVNQGTPLANGTPEQ 240
Cdd:COG4988 481 RLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGR--TVILITHRLALLA-QADRILVLDDGRIVEQGTHEE 557
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
19-243 |
1.75e-27 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 110.69 E-value: 1.75e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 19 LAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIAR-MGVVrtFQHVRLFrEMTV 97
Cdd:COG2274 489 PVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPASLRRqIGVV--LQDVFLF-SGTI 565
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 98 IENLLVAQHQqlksglfsgllktpafrrAHSEALDRAAtwlERINLLQHANR-----------QAGNLAYGDQRRLEIAR 166
Cdd:COG2274 566 RENITLGDPD------------------ATDEEIIEAA---RLAGLHDFIEAlpmgydtvvgeGGSNLSGGQRQRLAIAR 624
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1821658505 167 CMVTQPAILMLDEPAAGLNPKETKELDELIVELRnhHNTTILLIEHDMKLVMgISDRIYVVNQGTPLANGTPEQIRN 243
Cdd:COG2274 625 ALLRNPRILILDEATSALDAETEAIILENLRRLL--KGRTVIIIAHRLSTIR-LADRIIVLDKGRIVEDGTHEELLA 698
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
5-248 |
4.22e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 106.47 E-value: 4.22e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 5 LLSVSGLMMRFGG-----LLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRD----QHLEGLPGQ 75
Cdd:PRK13631 21 ILRVKNLYCVFDEkqeneLVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDiyigDKKNNHELI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 76 QIARMGVVRTFQhvRLFREMTVIenLLVAQHQQLKSGLFSGLLKTP-AFRRAHSEALDRAATWLERINL-LQHANRQAGN 153
Cdd:PRK13631 101 TNPYSKKIKNFK--ELRRRVSMV--FQFPEYQLFKDTIEKDIMFGPvALGVKKSEAKKLAKFYLNKMGLdDSYLERSPFG 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 154 LAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQGTPL 233
Cdd:PRK13631 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTMEHVLEVADEVIVMDKGKIL 255
|
250
....*....|....*
gi 1821658505 234 ANGTPEQIRNNPDVI 248
Cdd:PRK13631 256 KTGTPYEIFTDQHII 270
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
20-230 |
5.33e-27 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 104.78 E-value: 5.33e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMgVVRTFQHVRL--FREMTV 97
Cdd:COG1101 21 ALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRAKY-IGRVFQDPMMgtAPSMTI 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 98 IENLLVAQHQQLKSGLFSGLLKTpafRRAHSEALdraatwLERINL-LQhaNR---QAGNLAyGDQRR-LEIARCMVTQP 172
Cdd:COG1101 100 EENLALAYRRGKRRGLRRGLTKK---RRELFREL------LATLGLgLE--NRldtKVGLLS-GGQRQaLSLLMATLTKP 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 173 AILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMK--LVMGisDRIYVVNQG 230
Cdd:COG1101 168 KLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNMEqaLDYG--NRLIMMHEG 225
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
16-245 |
5.88e-27 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 106.32 E-value: 5.88e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 16 GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQI--AR--MGVVrtFQHVRL 91
Cdd:COG1135 16 GPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERELraARrkIGMI--FQHFNL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 92 FREMTVIEN----LLVAqhqqlksglfsgllKTPAfrrahSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIARC 167
Cdd:COG1135 94 LSSRTVAENvalpLEIA--------------GVPK-----AEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARA 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1821658505 168 MVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNP 245
Cdd:COG1135 155 LANNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLDVFANP 232
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
20-236 |
2.33e-26 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 102.41 E-value: 2.33e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIML--------RDQHLeglpgqqiARMGVVRTfQHVRL 91
Cdd:cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVaglvpwkrRKKFL--------RRIGVVFG-QKTQL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 92 FREMTVIENLLVAQH-QQLKSGLFsgllktpAFRRAH-SEALDraatwLERInllqhANRQAGNLAYGDQRRLEIARCMV 169
Cdd:cd03267 107 WWDLPVIDSFYLLAAiYDLPPARF-------KKRLDElSELLD-----LEEL-----LDTPVRQLSLGQRMRAEIAAALL 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1821658505 170 TQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANG 236
Cdd:cd03267 170 HEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
19-246 |
2.74e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 103.56 E-value: 2.74e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 19 LAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIAR-----MGVVRTFQHVRLFR 93
Cdd:PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKplrkkVGIVFQFPEHQLFE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 94 EmTVienllvaqhqqLKSGLFSGLlktpAFRRAHSEALDRAATWLERINLLQHA-NRQAGNLAYGDQRRLEIARCMVTQP 172
Cdd:PRK13634 101 E-TV-----------EKDICFGPM----NFGVSEEDAKQKAREMIELVGLPEELlARSPFELSGGQMRRVAIAGVLAMEP 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1821658505 173 AILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNPD 246
Cdd:PRK13634 165 EVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPD 238
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
17-243 |
4.10e-26 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 107.02 E-value: 4.10e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 17 GLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEglPGQQIARMGVVRTFQHVRLFREMT 96
Cdd:TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE--TNLDAVRQSLGMCPQHNILFHHLT 1019
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 97 VIENLLVaqHQQLKSglfsgllktpafrRAHSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPAILM 176
Cdd:TIGR01257 1020 VAEHILF--YAQLKG-------------RSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVV 1084
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1821658505 177 LDEPAAGLNPKETKELDELIVELRNhhNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRN 243
Cdd:TIGR01257 1085 LDEPTSGVDPYSRRSIWDLLLKYRS--GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
4-230 |
6.61e-26 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 99.81 E-value: 6.61e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 4 PLLSVSGLmmrfGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVV 83
Cdd:cd03215 3 PVLEVRGL----SVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 84 -----RtfQHVRLFREMTVIENLLVAQhqqlksgLFSGllktpafrrahsealdraatwlerinllqhanrqaGNlaygd 158
Cdd:cd03215 79 yvpedR--KREGLVLDLSVAENIALSS-------LLSG-----------------------------------GN----- 109
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1821658505 159 QRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:cd03215 110 QQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLISSELDELLGLCDRILVMYEG 180
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
5-246 |
1.18e-25 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 101.38 E-value: 1.18e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 5 LLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQI--ARMGV 82
Cdd:PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLytVRKRM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 83 VRTFQHVRLFREMTVIENLL--VAQHQQLKSGLFsgllktpafrraHSEALDRaatwLERINLLQHANRQAGNLAYGDQR 160
Cdd:PRK11831 87 SMLFQSGALFTDMNVFDNVAypLREHTQLPAPLL------------HSTVMMK----LEAVGLRGAAKLMPSELSGGMAR 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 161 RLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQ 240
Cdd:PRK11831 151 RAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQA 230
|
....*.
gi 1821658505 241 IRNNPD 246
Cdd:PRK11831 231 LQANPD 236
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
21-235 |
1.74e-25 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 100.23 E-value: 1.74e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 21 VNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRdqhleglpGQQIARMGVVR--TFQHVRLFREMTVI 98
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILE--------GKQITEPGPDRmvVFQNYSLLPWLTVR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 99 ENLLVAQHQQLksglfsgllktPAFRRAHSEALDRAAtwLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPAILMLD 178
Cdd:TIGR01184 73 ENIALAVDRVL-----------PDLSKSERRAIVEEH--IALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLD 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1821658505 179 EPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGtPLAN 235
Cdd:TIGR01184 140 EPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG-PAAN 195
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-245 |
2.22e-25 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 100.24 E-value: 2.22e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCL------------TG--------FYKPTGG 60
Cdd:PRK14239 1 MTEPILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSInrmndlnpevtiTGsivynghnIYSPRTD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 61 TIMLRDQhleglpgqqiarMGVVrtFQHVRLFrEMTVIENLLVaqhqqlksGL-FSGLLKTPAFRRAHSEALDRAATWLE 139
Cdd:PRK14239 81 TVDLRKE------------IGMV--FQQPNPF-PMSIYENVVY--------GLrLKGIKDKQVLDEAVEKSLKGASIWDE 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 140 RINLLqHANrqAGNLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHntTILLIEHDMKLVMG 219
Cdd:PRK14239 138 VKDRL-HDS--ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDY--TMLLVTRSMQQASR 212
|
250 260
....*....|....*....|....*.
gi 1821658505 220 ISDRIYVVNQGTPLANGTPEQIRNNP 245
Cdd:PRK14239 213 ISDRTGFFLDGDLIEYNDTKQMFMNP 238
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
6-245 |
2.27e-25 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 100.37 E-value: 2.27e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTT---VFNCLTGFYKptggtimlrDQHLEG---LPGQQIAR 79
Cdd:PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTllrVFNRLIELYP---------EARVSGevyLDGQDIFK 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 80 MGVVRTFQHVRL-FREMTVIENLLVAQHQQLKSGLfSGLLKTPA--FRRAHsEALDRAATWLERINLLqhaNRQAGNLAY 156
Cdd:PRK14247 75 MDVIELRRRVQMvFQIPNPIPNLSIFENVALGLKL-NRLVKSKKelQERVR-WALEKAQLWDEVKDRL---DAPAGKLSG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 157 GDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhhNTTILLIEHDMKLVMGISDRIYVVNQGTPLANG 236
Cdd:PRK14247 150 GQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK--DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227
|
....*....
gi 1821658505 237 TPEQIRNNP 245
Cdd:PRK14247 228 PTREVFTNP 236
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-245 |
4.63e-25 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 99.73 E-value: 4.63e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 2 SQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCL-------TGFYkpTGGTIMLRDQHLEGlPG 74
Cdd:COG1117 8 LEPKIEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLnrmndliPGAR--VEGEILLDGEDIYD-PD 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 75 QQI----ARMGVVrtFQHVRLFReMTVIENllVA---QHQQLKSglfsgllktpafRRAHSE----ALDRAATWLE---R 140
Cdd:COG1117 85 VDVvelrRRVGMV--FQKPNPFP-KSIYDN--VAyglRLHGIKS------------KSELDEiveeSLRKAALWDEvkdR 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 141 INllqhanRQAGNLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHntTILLIEHDMKLVMGI 220
Cdd:COG1117 148 LK------KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKDY--TIVIVTHNMQQAARV 219
|
250 260
....*....|....*....|....*
gi 1821658505 221 SDRIYVVNQGTPLANGTPEQIRNNP 245
Cdd:COG1117 220 SDYTAFFYLGELVEFGPTEQIFTNP 244
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
2-249 |
6.36e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 99.68 E-value: 6.36e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 2 SQPLLSVSGLMMRFGG--LLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQI-A 78
Cdd:PRK13632 4 KSVMIKVENVSFSYPNseNNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIrK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 79 RMGVVrtFQHV-RLFREMTV-------IENLLVAqhqqlksglfsgllktpafRRAHSEALDRAAtwlERINLLQHANRQ 150
Cdd:PRK13632 84 KIGII--FQNPdNQFIGATVeddiafgLENKKVP-------------------PKKMKDIIDDLA---KKVGMEDYLDKE 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 151 AGNLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMgISDRIYVVNQG 230
Cdd:PRK13632 140 PQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEG 218
|
250
....*....|....*....
gi 1821658505 231 TPLANGTPEQIRNNPDVIR 249
Cdd:PRK13632 219 KLIAQGKPKEILNNKEILE 237
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
23-254 |
7.11e-25 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 100.95 E-value: 7.11e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 23 NVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHL-EGLPGQQIA----RMGVVrtFQHVRLFREMTV 97
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVLqDSARGIFLPphrrRIGYV--FQEARLFPHLSV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 98 IENLLVAQHQqlksglfsgllktpAFRRAHSEALDRAATWLERINLLqhaNRQAGNLAYGDQRRLEIARCMVTQPAILML 177
Cdd:COG4148 95 RGNLLYGRKR--------------APRAERRISFDEVVELLGIGHLL---DRRPATLSGGERQRVAIGRALLSSPRLLLM 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1821658505 178 DEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNPDVIRAYLGE 254
Cdd:COG4148 158 DEPLAALDLARKAEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRPDLLPLAGGE 234
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
17-249 |
9.54e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 99.54 E-value: 9.54e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 17 GLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEglpgqqIARMGVVRTFQHVRLFREMT 96
Cdd:PRK13636 18 GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPID------YSRKGLMKLRESVGMVFQDP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 97 VIENLLVAQHQQLKSGLFSglLKTPafrraHSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPAILM 176
Cdd:PRK13636 92 DNQLFSASVYQDVSFGAVN--LKLP-----EDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLV 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1821658505 177 LDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNPDVIR 249
Cdd:PRK13636 165 LDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLR 237
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
23-236 |
1.04e-24 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 97.75 E-value: 1.04e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 23 NVSLELRErEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEG------LPGQQiARMGVVrtFQHVRLFREMT 96
Cdd:cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDsrkkinLPPQQ-RKIGLV--FQQYALFPHLN 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 97 VIENLLVAqhqqlksglfsglLKtpafRRAHSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPAILM 176
Cdd:cd03297 92 VRENLAFG-------------LK----RKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 177 LDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANG 236
Cdd:cd03297 155 LDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
25-230 |
1.17e-24 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 97.62 E-value: 1.17e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 25 SLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQ-HLEGLPGQQIARMgvvrTFQHVRLFREMTVIENLLV 103
Cdd:TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQsHTGLAPYQRPVSM----LFQENNLFAHLTVRQNIGL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 104 AQHQQLKsglfsgllktpaFRRAHSEALDRAATWLERINLLQhanRQAGNLAYGDQRRLEIARCMVTQPAILMLDEPAAG 183
Cdd:TIGR01277 94 GLHPGLK------------LNAEQQEKVVDAAQQVGIADYLD---RLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSA 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1821658505 184 LNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:TIGR01277 159 LDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQG 205
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
6-252 |
1.71e-24 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 100.49 E-value: 1.71e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPG---QQIARMGV 82
Cdd:PRK10070 29 LSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDaelREVRRKKI 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 83 VRTFQHVRLFREMTVIENLLVAQHqqlksglfsgLLKTPAFRRaHSEALDRaatwLERINLLQHANRQAGNLAYGDQRRL 162
Cdd:PRK10070 109 AMVFQSFALMPHMTVLDNTAFGME----------LAGINAEER-REKALDA----LRQVGLENYAHSYPDELSGGMRQRV 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 163 EIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIR 242
Cdd:PRK10070 174 GLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
250
....*....|..
gi 1821658505 243 NNP--DVIRAYL 252
Cdd:PRK10070 254 NNPanDYVRTFF 265
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-254 |
3.42e-24 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 98.75 E-value: 3.42e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARM 80
Cdd:PRK13536 37 MSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 81 GVVRTFQhvRLFREMTVIENLLVAQHQqlksglfsgllktpaFRRAHSEALDRAATWLERINLLQHANRQAGNLAYGDQR 160
Cdd:PRK13536 117 GVVPQFD--NLDLEFTVRENLLVFGRY---------------FGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKR 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 161 RLEIARCMVTQPAILMLDEPAAGLNPKETkeldELIVE-LRN--HHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGT 237
Cdd:PRK13536 180 RLTLARALINDPQLLILDEPTTGLDPHAR----HLIWErLRSllARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGR 255
|
250 260
....*....|....*....|..
gi 1821658505 238 P-----EQIrnNPDVIRAYLGE 254
Cdd:PRK13536 256 PhalidEHI--GCQVIEIYGGD 275
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
8-245 |
4.85e-24 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 96.74 E-value: 4.85e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 8 VSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEG---LPGQQIA----RM 80
Cdd:PRK11264 6 VKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTarsLSQQKGLirqlRQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 81 GVVRTFQHVRLFREMTVIENLLVAQHQqlksglfsgLLKTPafrraHSEALDRAATWLERINLLQHANRQAGNLAYGDQR 160
Cdd:PRK11264 86 HVGFVFQNFNLFPHRTVLENIIEGPVI---------VKGEP-----KEEATARARELLAKVGLAGKETSYPRRLSGGQQQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 161 RLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRnHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQ 240
Cdd:PRK11264 152 RVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLA-QEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKA 230
|
....*
gi 1821658505 241 IRNNP 245
Cdd:PRK11264 231 LFADP 235
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
14-255 |
5.12e-24 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 98.64 E-value: 5.12e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 14 RFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDqhlEGLPGQQIARMGVVRTFQHVRLFR 93
Cdd:PRK11432 15 RFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDG---EDVTHRSIQQRDICMVFQSYALFP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 94 EMTVIENLlvaqhqqlKSGLfsGLLKTPAfrrahSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPA 173
Cdd:PRK11432 92 HMSLGENV--------GYGL--KMLGVPK-----EERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 174 ILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNPD--VIRAY 251
Cdd:PRK11432 157 VLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPAsrFMASF 236
|
....
gi 1821658505 252 LGEA 255
Cdd:PRK11432 237 MGDA 240
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
5-236 |
7.05e-24 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 95.51 E-value: 7.05e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 5 LLSVSGLMMRF----GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARM 80
Cdd:cd03266 1 MITADALTKRFrdvkKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 81 GVVrtFQHVRLFREMTVIENLlvaqhqqlksGLFSGL--LKtpafRRAHSEALDRAATWLERINLLqhaNRQAGNLAYGD 158
Cdd:cd03266 81 GFV--SDSTGLYDRLTARENL----------EYFAGLygLK----GDELTARLEELADRLGMEELL---DRRVGGFSTGM 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1821658505 159 QRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANG 236
Cdd:cd03266 142 RQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-241 |
1.15e-23 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 96.24 E-value: 1.15e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRFGGL--LAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIA 78
Cdd:PRK13635 1 MKEEIIRVEHISFRYPDAatYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 79 RM-GVVrtFQHV-RLFREMTV-------IENLLVAqhqqlksglfsgllktpafrraHSEALDRAATWLERINLLQHANR 149
Cdd:PRK13635 81 RQvGMV--FQNPdNQFVGATVqddvafgLENIGVP----------------------REEMVERVDQALRQVGMEDFLNR 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 150 QAGNLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGiSDRIYVVNQ 229
Cdd:PRK13635 137 EPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNK 215
|
250
....*....|..
gi 1821658505 230 GTPLANGTPEQI 241
Cdd:PRK13635 216 GEILEEGTPEEI 227
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
2-230 |
1.42e-23 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 98.83 E-value: 1.42e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 2 SQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTImlrdqHLEGLPgQQIARM- 80
Cdd:PRK11288 1 SSPYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSI-----LIDGQE-MRFASTt 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 81 -----GVVRTFQHVRLFREMTVIENLLVAqhqQLKSGLfsGLLKTPAFRRahsealdRAATWLERINLLQHANRQAGNLA 155
Cdd:PRK11288 75 aalaaGVAIIYQELHLVPEMTVAENLYLG---QLPHKG--GIVNRRLLNY-------EAREQLEHLGVDIDPDTPLKYLS 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1821658505 156 YGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:PRK11288 143 IGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRMEEIFALCDAITVFKDG 216
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
1-226 |
1.63e-23 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 96.72 E-value: 1.63e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRF---GGLL--------AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHL 69
Cdd:COG4608 3 MAEPLLEVRDLKKHFpvrGGLFgrtvgvvkAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 70 EGLPGQQIA----RMGVVrtFQ--HVRLFREMTV---IENLLVAQhqqlksGLFSGllktpafrrahSEALDRAATWLER 140
Cdd:COG4608 83 TGLSGRELRplrrRMQMV--FQdpYASLNPRMTVgdiIAEPLRIH------GLASK-----------AERRERVAELLEL 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 141 INLL-QHANRqagnlaY-----GDQR-RLEIARCMVTQPAILMLDEP---------AAGLNpketkeldeLIVELRNHHN 204
Cdd:COG4608 144 VGLRpEHADR------YphefsGGQRqRIGIARALALNPKLIVCDEPvsaldvsiqAQVLN---------LLEDLQDELG 208
|
250 260
....*....|....*....|..
gi 1821658505 205 TTILLIEHDMKLVMGISDRIYV 226
Cdd:COG4608 209 LTYLFISHDLSVVRHISDRVAV 230
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
16-224 |
1.76e-23 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 94.25 E-value: 1.76e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 16 GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEglPGQQIARMGVVrtFQHVR--LFR 93
Cdd:cd03226 11 KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIK--AKERRKSIGYV--MQDVDyqLFT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 94 EmTVIENLLVaqhqqlksGLfsgllktpafrRAHSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPA 173
Cdd:cd03226 87 D-SVREELLL--------GL-----------KELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKD 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1821658505 174 ILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRI 224
Cdd:cd03226 147 LLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVITHDYEFLAKVCDRV 196
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
32-236 |
2.77e-23 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 93.71 E-value: 2.77e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 32 EIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPgqqIARMGVVRTFQHVRLFREMTVIENLLVaqhqqlks 111
Cdd:cd03298 25 EITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAP---PADRPVSMLFQENNLFAHLTVEQNVGL-------- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 112 GLFSGLLKTPAFRRAHSEALdraatwlERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKE 191
Cdd:cd03298 94 GLSPGLKLTAEDRQAIEVAL-------ARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1821658505 192 LDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANG 236
Cdd:cd03298 167 MLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
20-251 |
2.87e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 95.57 E-value: 2.87e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQ-----IARMGVVRTFQHVRLFRE 94
Cdd:PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKeikpvRKKVGVVFQFPESQLFEE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 95 mTVIENLLVAQHQqlksglfsgllktpaFRRAHSEALDRAATWLERINLLQHA-NRQAGNLAYGDQRRLEIARCMVTQPA 173
Cdd:PRK13643 101 -TVLKDVAFGPQN---------------FGIPKEKAEKIAAEKLEMVGLADEFwEKSPFELSGGQMRRVAIAGILAMEPE 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1821658505 174 ILMLDEPAAGLNPKETKELDELIvELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNPDVIRAY 251
Cdd:PRK13643 165 VLVLDEPTAGLDPKARIEMMQLF-ESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAH 241
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
16-255 |
3.73e-23 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 96.02 E-value: 3.73e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 16 GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQI--ARMGVVRTFQHVRLFR 93
Cdd:PRK11153 16 RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELrkARRQIGMIFQHFNLLS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 94 EMTVIENLLVAqhqqlksglfsglLKTPAFRRAHSEAldRAATWLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPA 173
Cdd:PRK11153 96 SRTVFDNVALP-------------LELAGTPKAEIKA--RVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 174 ILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNP--DVIRAY 251
Cdd:PRK11153 161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPkhPLTREF 240
|
....
gi 1821658505 252 LGEA 255
Cdd:PRK11153 241 IQST 244
|
|
| OpuBA |
COG1125 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
16-254 |
3.82e-23 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440742 [Multi-domain] Cd Length: 306 Bit Score: 95.54 E-value: 3.82e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 16 GGLLAVNNVSLELREREIVSLIGPNGAGKTTVF---NCLtgfYKPTGGTIMLRDQHLEGLPGQQIAR-MGVVrtFQHVRL 91
Cdd:COG1125 13 DGTVAVDDLSLTIPAGEFTVLVGPSGCGKTTTLrmiNRL---IEPTSGRILIDGEDIRDLDPVELRRrIGYV--IQQIGL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 92 FREMTVIENL-LVAQhqqlksglfsgLLKTPAfrrahSEALDRAATWLERINL--LQHANRQAGNLAYGDQRRLEIARCM 168
Cdd:COG1125 88 FPHMTVAENIaTVPR-----------LLGWDK-----ERIRARVDELLELVGLdpEEYRDRYPHELSGGQQQRVGVARAL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 169 VTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMK--LVMGisDRIYVVNQGTPLANGTPEQIRNNP- 245
Cdd:COG1125 152 AADPPILLMDEPFGALDPITREQLQDELLRLQRELGKTIVFVTHDIDeaLKLG--DRIAVMREGRIVQYDTPEEILANPa 229
|
250
....*....|
gi 1821658505 246 -DVIRAYLGE 254
Cdd:COG1125 230 nDFVADFVGA 239
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
14-245 |
4.11e-23 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 94.00 E-value: 4.11e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 14 RFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGlPGQQIARM----GVVrtFQHV 89
Cdd:PRK09493 10 HFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVDERLIrqeaGMV--FQQF 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 90 RLFREMTVIENLLVaqhqqlksglfsGLLKTPAFRRAhsEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIARCMV 169
Cdd:PRK09493 87 YLFPHLTALENVMF------------GPLRVRGASKE--EAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALA 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1821658505 170 TQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNP 245
Cdd:PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
5-226 |
4.23e-23 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 95.51 E-value: 4.23e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 5 LLSVSGLMMRF----GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKP---TGGTIMLRDQHLEGLPGQQI 77
Cdd:COG0444 1 LLEVRNLKVYFptrrGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLKLSEKEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 78 -----ARMGVVrtFQH-------VrlfreMTVIEnllvaqhqQLKSGLfsgllktpafrRAH-----SEALDRAATWLER 140
Cdd:COG0444 81 rkirgREIQMI--FQDpmtslnpV-----MTVGD--------QIAEPL-----------RIHgglskAEARERAIELLER 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 141 INL---LQHANRqagnlaY-----GDQR-RLEIARCMVTQPAILMLDEPaaglnpkeTKELD--------ELIVELRNHH 203
Cdd:COG0444 135 VGLpdpERRLDR------YphelsGGMRqRVMIARALALEPKLLIADEP--------TTALDvtiqaqilNLLKDLQREL 200
|
250 260
....*....|....*....|...
gi 1821658505 204 NTTILLIEHDMKLVMGISDRIYV 226
Cdd:COG0444 201 GLAILFITHDLGVVAEIADRVAV 223
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
20-249 |
5.17e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 94.48 E-value: 5.17e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRdqhleglpGQQIARMGVVRTFQHVRLFREMTVIE 99
Cdd:PRK13652 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIR--------GEPITKENIREVRKFVGLVFQNPDDQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 100 NLLVAQHQQLKSGLFSGLLKTPAFRRAHSEALdraatwlERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPAILMLDE 179
Cdd:PRK13652 91 IFSPTVEQDIAFGPINLGLDEETVAHRVSSAL-------HMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDE 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 180 PAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNPDVIR 249
Cdd:PRK13652 164 PTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLA 233
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
18-244 |
5.74e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 95.15 E-value: 5.74e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 18 LLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI--MLRDQHLEGLPG--------------------- 74
Cdd:PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIewIFKDEKNKKKTKekekvleklviqktrfkkikk 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 75 -QQI-ARMGVVRTFQHVRLFrEMTVIENLLVaqhqqlksGLFS-GLLKtpafrrahSEALDRAATWLERINL-LQHANRQ 150
Cdd:PRK13651 100 iKEIrRRVGVVFQFAEYQLF-EQTIEKDIIF--------GPVSmGVSK--------EEAKKRAAKYIELVGLdESYLQRS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 151 AGNLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELrNHHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:PRK13651 163 PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNL-NKQGKTIILVTHDLDNVLEWTKRTIFFKDG 241
|
250
....*....|....
gi 1821658505 231 TPLANGTPEQIRNN 244
Cdd:PRK13651 242 KIIKDGDTYDILSD 255
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
3-230 |
6.19e-23 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 97.00 E-value: 6.19e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 3 QPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQ--HLEGLPGQQIARM 80
Cdd:PRK10762 2 QALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKevTFNGPKSSQEAGI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 81 GVVRtfQHVRLFREMTVIENllvaqhqqlksgLFSGLLKTPAFRRA-HSEALDRAATWLERINLLQHANRQAGNLAYGDQ 159
Cdd:PRK10762 82 GIIH--QELNLIPQLTIAEN------------IFLGREFVNRFGRIdWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQ 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1821658505 160 RRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:PRK10762 148 QMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRLKEIFEICDDVTVFRDG 217
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
1-231 |
7.76e-23 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 93.16 E-value: 7.76e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSqplLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQH--LEGLPG-QQI 77
Cdd:PRK11124 1 MS---IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHfdFSKTPSdKAI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 78 A--RMGVVRTFQHVRLFREMTVIENLLVAQHQQLksglfsGLLKtpafrrahSEALDRAATWLERINLLQHANRQAGNLA 155
Cdd:PRK11124 78 RelRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL------GLSK--------DQALARAEKLLERLRLKPYADRFPLHLS 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 156 YGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTIlLIEHDMKLVMGISDRI------YVVNQ 229
Cdd:PRK11124 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQV-IVTHEVEVARKTASRVvymengHIVEQ 222
|
..
gi 1821658505 230 GT 231
Cdd:PRK11124 223 GD 224
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
6-199 |
8.43e-23 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 93.15 E-value: 8.43e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQH--LEGLPGQQIARM--- 80
Cdd:COG4161 3 IQLKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQfdFSQKPSEKAIRLlrq 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 81 --GVVrtFQHVRLFREMTVIENLLVAQHQQLksglfsGLLKtpafrrahSEALDRAATWLERINLLQHANRQAGNLAYGD 158
Cdd:COG4161 83 kvGMV--FQQYNLWPHLTVMENLIEAPCKVL------GLSK--------EQAREKAMKLLARLRLTDKADRFPLHLSGGQ 146
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1821658505 159 QRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVEL 199
Cdd:COG4161 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQVVEIIREL 187
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
16-240 |
9.47e-23 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 92.67 E-value: 9.47e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 16 GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARM-GVVrtFQHVRLFRE 94
Cdd:cd03254 14 EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMiGVV--LQDTFLFSG 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 95 mTVIENLlvaqhqqlksglfsgLLKTPAFRRAHSEALDRAATWLERINLLQ-----HANRQAGNLAYGDQRRLEIARCMV 169
Cdd:cd03254 92 -TIMENI---------------RLGRPNATDEEVIEAAKEAGAHDFIMKLPngydtVLGENGGNLSQGERQLLAIARAML 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1821658505 170 TQPAILMLDEPAAGLNPKETKELDELIVELRNhhNTTILLIEHDMKLVMGiSDRIYVVNQGTPLANGTPEQ 240
Cdd:cd03254 156 RDPKILILDEATSNIDTETEKLIQEALEKLMK--GRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDE 223
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
20-244 |
1.02e-22 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 94.38 E-value: 1.02e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIM--------LRDQHLeglpgqqiARMGVV---RTfqh 88
Cdd:COG4586 37 AVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRvlgyvpfkRRKEFA--------RRIGVVfgqRS--- 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 89 vRLFREMTVIENLLvaqhqqlksglfsgLLKT----PafRRAHSEALDRAATWLERINLLqhaNRQAGNLAYGdQR-RLE 163
Cdd:COG4586 106 -QLWWDLPAIDSFR--------------LLKAiyriP--DAEYKKRLDELVELLDLGELL---DTPVRQLSLG-QRmRCE 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 164 IARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRN 243
Cdd:COG4586 165 LAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSHDMDDIEALCDRVIVIDHGRIIYDGSLEELKE 244
|
.
gi 1821658505 244 N 244
Cdd:COG4586 245 R 245
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
8-213 |
1.25e-22 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 96.29 E-value: 1.25e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 8 VSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRdqhleglPGqqiARMGVVRtfQ 87
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIP-------KG---LRIGYLP--Q 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 88 HVRLFREMTVIENLLVAqhqqlksglFSGLLKTPAFRRAHSEALDRAATWLERINLLQHA-------------------- 147
Cdd:COG0488 69 EPPLDDDLTVLDTVLDG---------DAELRALEAELEELEAKLAEPDEDLERLAELQEEfealggweaearaeeilsgl 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1821658505 148 -------NRQAGNLAYGDQRRLEIARCMVTQPAILMLDEPaaglnpkeTKELD-ELIVELRNH---HNTTILLIEHD 213
Cdd:COG0488 140 gfpeedlDRPVSELSGGWRRRVALARALLSEPDLLLLDEP--------TNHLDlESIEWLEEFlknYPGTVLVVSHD 208
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
6-227 |
1.61e-22 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 95.82 E-value: 1.61e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGG-LLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLP----GQQIARM 80
Cdd:TIGR02857 322 LEFSGVSVAYPGrRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADadswRDQIAWV 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 81 GvvrtfQHVRLFrEMTVIENLLVAQHQQlksglfsgllkTPAfrrAHSEALDRAATWLERINLLQHANRQAGN----LAY 156
Cdd:TIGR02857 402 P-----QHPFLF-AGTIAENIRLARPDA-----------SDA---EIREALERAGLDEFVAALPQGLDTPIGEggagLSG 461
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1821658505 157 GDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHntTILLIEHDMKLvMGISDRIYVV 227
Cdd:TIGR02857 462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGR--TVLLVTHRLAL-AALADRIVVL 529
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
4-230 |
1.83e-22 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 95.47 E-value: 1.83e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 4 PLLSVSGLMMRfgglLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGL-PGQQIARmGV 82
Cdd:COG1129 255 VVLEVEGLSVG----GVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRIRsPRDAIRA-GI 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 83 V-----RtfQHVRLFREMTVIENLLVAQHQQLKSGlfsGLLKTPAFRRAhsealdrAATWLERINL-LQHANRQAGNLAY 156
Cdd:COG1129 330 AyvpedR--KGEGLVLDLSIRENITLASLDRLSRG---GLLDRRRERAL-------AEEYIKRLRIkTPSPEQPVGNLSG 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 157 GDQRRLEIARCMVTQPAILMLDEPaaglnpkeTKELD--------ELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVN 228
Cdd:COG1129 398 GNQQKVVLAKWLATDPKVLILDEP--------TRGIDvgakaeiyRLIRELAA-EGKAVIVISSELPELLGLSDRILVMR 468
|
..
gi 1821658505 229 QG 230
Cdd:COG1129 469 EG 470
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
11-231 |
2.26e-22 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 95.24 E-value: 2.26e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 11 LMMR-----FGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYkPTG---GTImlrdqHLEGLPGQ-----QI 77
Cdd:NF040905 2 LEMRgitktFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVY-PHGsyeGEI-----LFDGEVCRfkdirDS 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 78 ARMGVVRTFQHVRLFREMTVIENLLVAqHQQLKSGLFSgllktpafrraHSEALDRAATWLERINLLQHANRQAGNLAYG 157
Cdd:NF040905 76 EALGIVIIHQELALIPYLSIAENIFLG-NERAKRGVID-----------WNETNRRARELLAKVGLDESPDTLVTDIGVG 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1821658505 158 DQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTIlLIEHDMKLVMGISDRIYVVNQGT 231
Cdd:NF040905 144 KQQLVEIAKALSKDVKLLILDEPTAALNEEDSAALLDLLLELKAQGITSI-IISHKLNEIRRVADSITVLRDGR 216
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
20-241 |
3.02e-22 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 95.25 E-value: 3.02e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLR------DQHLEGLPGQQIAR--MGVVrtFQHVRL 91
Cdd:TIGR03269 299 AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRvgdewvDMTKPGPDGRGRAKryIGIL--HQEYDL 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 92 FREMTVIENLLVAQHQQLKSGLFSG----LLKTPAFRRAHSEaldraatwleriNLLqhaNRQAGNLAYGDQRRLEIARC 167
Cdd:TIGR03269 377 YPHRTVLDNLTEAIGLELPDELARMkaviTLKMVGFDEEKAE------------EIL---DKYPDELSEGERHRVALAQV 441
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1821658505 168 MVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQI 241
Cdd:TIGR03269 442 LIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
4-245 |
3.95e-22 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 94.75 E-value: 3.95e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 4 PLLSVSGLMMRF---GGLL--------AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYkPTGGTIMLRDQHLEGL 72
Cdd:COG4172 274 PLLEARDLKVWFpikRGLFrrtvghvkAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLI-PSEGEIRFDGQDLDGL 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 73 PGQQI----ARMGVVrtFQ------HVRLFREMTVIENLLVAQHQQlksglfsgllkTPAFRRAhsealdRAATWLERIN 142
Cdd:COG4172 353 SRRALrplrRRMQVV--FQdpfgslSPRMTVGQIIAEGLRVHGPGL-----------SAAERRA------RVAEALEEVG 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 143 LL-QHANRqagnlaY-----GDQR-RLEIARCMVTQPAILMLDEPaaglnpkeTKELD--------ELIVELRNHHNTTI 207
Cdd:COG4172 414 LDpAARHR------YphefsGGQRqRIAIARALILEPKLLVLDEP--------TSALDvsvqaqilDLLRDLQREHGLAY 479
|
250 260 270
....*....|....*....|....*....|....*...
gi 1821658505 208 LLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNP 245
Cdd:COG4172 480 LFISHDLAVVRALAHRVMVMKDGKVVEQGPTEQVFDAP 517
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
19-241 |
5.52e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 91.74 E-value: 5.52e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 19 LAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIAR-MGVVrtFQHVrlfremtv 97
Cdd:PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKhIGIV--FQNP-------- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 98 iENLLVAQhqQLKSGLFSGLlktPAFRRAHSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPAILML 177
Cdd:PRK13648 93 -DNQFVGS--IVKYDVAFGL---ENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIIL 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1821658505 178 DEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGiSDRIYVVNQGTPLANGTPEQI 241
Cdd:PRK13648 167 DEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEI 229
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
6-239 |
6.11e-22 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 89.89 E-value: 6.11e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGF--YKPTGGTIMLRDQHLEGLPGQQIARMGVV 83
Cdd:cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHpkYEVTEGEILFKGEDITDLPPEERARLGIF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 84 RTFQHVRLFREMTVIENLlvaqhQQLKSGlFSGllktpafrrahsealdraatwlerinllqhanrqagnlayGDQRRLE 163
Cdd:cd03217 81 LAFQYPPEIPGVKNADFL-----RYVNEG-FSG----------------------------------------GEKKRNE 114
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1821658505 164 IARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGI-SDRIYVVNQGTPLANGTPE 239
Cdd:cd03217 115 ILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSGDKE 190
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
4-248 |
6.61e-22 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 90.94 E-value: 6.61e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 4 PLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTImLRDQHLeglpgqqiaRMGVV 83
Cdd:PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-KRNGKL---------RIGYV 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 84 RTfqhvRLFREMTVieNLLVAQHQQLKSGLFSGLLkTPAFRRAHSEaldraatwleriNLLQHANRQagnLAYGDQRRLE 163
Cdd:PRK09544 73 PQ----KLYLDTTL--PLTVNRFLRLRPGTKKEDI-LPALKRVQAG------------HLIDAPMQK---LSGGETQRVL 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 164 IARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTpLANGTPEQIRN 243
Cdd:PRK09544 131 LARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHHI-CCSGTPEVVSL 209
|
....*
gi 1821658505 244 NPDVI 248
Cdd:PRK09544 210 HPEFI 214
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-245 |
1.13e-21 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 90.37 E-value: 1.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQH-----LEGLPGQ 75
Cdd:PRK11701 2 MDQPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDgqlrdLYALSEA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 76 QIARM-----GVVRtfQHVRLFREMTV-----IENLLVAQHQqlksglfsgllktpafrRAHSEALDRAATWLERINLlq 145
Cdd:PRK11701 82 ERRRLlrtewGFVH--QHPRDGLRMQVsaggnIGERLMAVGA-----------------RHYGDIRATAGDWLERVEI-- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 146 HANR---QAGNLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISD 222
Cdd:PRK11701 141 DAARiddLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAH 220
|
250 260
....*....|....*....|...
gi 1821658505 223 RIYVVNQGTPLANGTPEQIRNNP 245
Cdd:PRK11701 221 RLLVMKQGRVVESGLTDQVLDDP 243
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
10-242 |
1.65e-21 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 93.27 E-value: 1.65e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 10 GLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEglPGQQIARMGVVRTFQHV 89
Cdd:NF033858 271 GLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVD--AGDIATRRRVGYMSQAF 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 90 RLFREMTVIENLLVaqHQQLksglfsgllktpaFRRAHSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIARCMV 169
Cdd:NF033858 349 SLYGELTVRQNLEL--HARL-------------FHLPAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVI 413
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1821658505 170 TQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGiSDRIYVVNQGTPLANGTPEQIR 242
Cdd:NF033858 414 HKPELLILDEPTSGVDPVARDMFWRLLIELSREDGVTIFISTHFMNEAER-CDRISLMHAGRVLASDTPAALV 485
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
5-214 |
1.76e-21 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 90.14 E-value: 1.76e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 5 LLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGlPGqqiARMGVVr 84
Cdd:PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG-PG---AERGVV- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 85 tFQHVRLFREMTVIENllVAQHQQLksglfSGLLKtpafrrahSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEI 164
Cdd:PRK11248 76 -FQNEGLLPWRNVQDN--VAFGLQL-----AGVEK--------MQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGI 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1821658505 165 ARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDM 214
Cdd:PRK11248 140 ARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI 189
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
4-250 |
1.86e-21 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 92.81 E-value: 1.86e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 4 PLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVV 83
Cdd:PRK15439 10 PLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 84 RTFQHVRLFREMTVIENLLVaqhqqlksglfsGLLKtpafrraHSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLE 163
Cdd:PRK15439 90 LVPQEPLLFPNLSVKENILF------------GLPK-------RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 164 IARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRN 243
Cdd:PRK15439 151 ILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229
|
....*..
gi 1821658505 244 NpDVIRA 250
Cdd:PRK15439 230 D-DIIQA 235
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
17-250 |
2.66e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 89.79 E-value: 2.66e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 17 GLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGG--TIMLRDQHLEGlpgQQIARMGVVRTFQHV--RLF 92
Cdd:PRK13647 17 GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGrvKVMGREVNAEN---EKWVRSKVGLVFQDPddQVF 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 93 rEMTVIENLLVAQHQQlksglfsGLlktpafrrAHSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQP 172
Cdd:PRK13647 94 -SSTVWDDVAFGPVNM-------GL--------DKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDP 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1821658505 173 AILMLDEPAAGLNPKETKELDELIVELrNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEqIRNNPDVIRA 250
Cdd:PRK13647 158 DVIVLDEPMAYLDPRGQETLMEILDRL-HNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKS-LLTDEDIVEQ 233
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
6-241 |
3.09e-21 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 92.17 E-value: 3.09e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGF--YKPTGGTIMLRDQHLE-----GLP---GQ 75
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGRIIYHVALCEkcgyvERPskvGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 76 Q-----------------------------IARMgVVRTFQhvrLFREMTVIENLLVAQHQQLKSGlfsgllktpafrra 126
Cdd:TIGR03269 81 PcpvcggtlepeevdfwnlsdklrrrirkrIAIM-LQRTFA---LYGDDTVLDNVLEALEEIGYEG-------------- 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 127 hSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTT 206
Cdd:TIGR03269 143 -KEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGIS 221
|
250 260 270
....*....|....*....|....*....|....*
gi 1821658505 207 ILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQI 241
Cdd:TIGR03269 222 MVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEV 256
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
5-241 |
3.13e-21 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 89.68 E-value: 3.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 5 LLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLE-GLPGQQIARMGVV 83
Cdd:PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDySKRGLLALRQQVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 84 RTFQHVRLFREMTVIENLLVAQHQQLksglfsGLLKTPAFRRahseaLDRAATWLERinllQHANRQAGN-LAYGDQRRL 162
Cdd:PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNL------GVPEAEITRR-----VDEALTLVDA----QHFRHQPIQcLSHGQKKRV 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1821658505 163 EIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNtTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQI 241
Cdd:PRK13638 146 AIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGN-HVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV 223
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
6-187 |
4.45e-21 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 87.41 E-value: 4.45e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHL---EGLPGQQIARMGv 82
Cdd:TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLaeqRDEPHENILYLG- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 83 vrtfqHVR-LFREMTVIENLLVAQHqqlksglfsgllktpaFRRAHSEALDRAatwLERINLLQHANRQAGNLAYGDQRR 161
Cdd:TIGR01189 80 -----HLPgLKPELSALENLHFWAA----------------IHGGAQRTIEDA---LAAVGLTGFEDLPAAQLSAGQQRR 135
|
170 180
....*....|....*....|....*.
gi 1821658505 162 LEIARCMVTQPAILMLDEPAAGLNPK 187
Cdd:TIGR01189 136 LALARLWLSRRPLWILDEPTTALDKA 161
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
11-230 |
4.61e-21 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 88.49 E-value: 4.61e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 11 LMMRFggllavnnvSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQ-HLEGLPGQQIARMgvvrTFQHV 89
Cdd:PRK10771 14 LPMRF---------DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQdHTTTPPSRRPVSM----LFQEN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 90 RLFREMTVIENLLVaqhqqlksGLFSGLLKTPAFRrahsEALDRAAtwlERINLLQHANRQAGNLAYGDQRRLEIARCMV 169
Cdd:PRK10771 81 NLFSHLTVAQNIGL--------GLNPGLKLNAAQR----EKLHAIA---RQMGIEDLLARLPGQLSGGQRQRVALARCLV 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1821658505 170 TQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADG 206
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
3-244 |
6.81e-21 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 88.53 E-value: 6.81e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 3 QPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYkpTGGTIMlrDQHLEgLPGQQIARMGV 82
Cdd:PRK09984 2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI--TGDKSA--GSHIE-LLGRTVQREGR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 83 VR------------TFQHVRLFREMTVIENLLVAqhqqlksglfsGLLKTPAFRRAHS----EALDRAATWLERINLLQH 146
Cdd:PRK09984 77 LArdirksrantgyIFQQFNLVNRLSVLENVLIG-----------ALGSTPFWRTCFSwftrEQKQRALQALTRVGMVHF 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 147 ANRQAGNLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYV 226
Cdd:PRK09984 146 AHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVA 225
|
250
....*....|....*...
gi 1821658505 227 VNQGTPLANGTPEQIRNN 244
Cdd:PRK09984 226 LRQGHVFYDGSSQQFDNE 243
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
5-246 |
1.07e-20 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 87.92 E-value: 1.07e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 5 LLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNC-------LTGFYkpTGGTIMLRDQHLEGL---PG 74
Cdd:PRK14243 10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCfnrlndlIPGFR--VEGKVTFHGKNLYAPdvdPV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 75 QQIARMGVVrtFQHVRLFREmTVIENLLVAQHQQLKSGLFSGLLKTpafrrahseALDRAATWLERINLLqhanRQAG-N 153
Cdd:PRK14243 88 EVRRRIGMV--FQKPNPFPK-SIYDNIAYGARINGYKGDMDELVER---------SLRQAALWDEVKDKL----KQSGlS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 154 LAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHntTILLIEHDMKLVMGISDRIYVVN----- 228
Cdd:PRK14243 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQY--TIIIVTHNMQQAARVSDMTAFFNvelte 229
|
250 260
....*....|....*....|..
gi 1821658505 229 ----QGTPLANGTPEQIRNNPD 246
Cdd:PRK14243 230 gggrYGYLVEFDRTEKIFNSPQ 251
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
1-216 |
1.68e-20 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 86.79 E-value: 1.68e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRF--GGLLA--VNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQ 76
Cdd:PRK11629 1 MNKILLQCDNLCKRYqeGSVQTdvLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 77 IA-----RMGVVRTFQHvrLFREMTVIENLLVAqhqqlksgLFSGLLKTpafrrahSEALDRAATWLERINLLQHANRQA 151
Cdd:PRK11629 81 KAelrnqKLGFIYQFHH--LLPDFTALENVAMP--------LLIGKKKP-------AEINSRALEMLAAVGLEHRANHRP 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1821658505 152 GNLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKL 216
Cdd:PRK11629 144 SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL 208
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
20-241 |
1.96e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 87.49 E-value: 1.96e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPG----QQI-ARMGVVRTFQHVRLFRE 94
Cdd:PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKnkdiKQIrKKVGLVFQFPESQLFEE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 95 mTVIENllVAQHQQlksglfsgllktpAFRRAHSEALDRAatwLERINLLQHA----NRQAGNLAYGDQRRLEIARCMVT 170
Cdd:PRK13649 102 -TVLKD--VAFGPQ-------------NFGVSQEEAEALA---REKLALVGISeslfEKNPFELSGGQMRRVAIAGILAM 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1821658505 171 QPAILMLDEPAAGLNPKETKELDELIVELrnHHN-TTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQI 241
Cdd:PRK13649 163 EPKILVLDEPTAGLDPKGRKELMTLFKKL--HQSgMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
4-241 |
3.16e-20 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 89.32 E-value: 3.16e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 4 PLLSVSGLMMR-FGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGV 82
Cdd:COG3845 256 VVLEVENLSVRdDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRLGV 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 83 VrtfqHV---RLFR----EMTVIENLLVAQHqqlKSGLFS--GLLKTPAFRRahsealdRAATWLERINL-LQHANRQAG 152
Cdd:COG3845 336 A----YIpedRLGRglvpDMSVAENLILGRY---RRPPFSrgGFLDRKAIRA-------FAEELIEEFDVrTPGPDTPAR 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 153 NLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQG-- 230
Cdd:COG3845 402 SLSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRD-AGAAVLLISEDLDEILALSDRIAVMYEGri 480
|
250
....*....|....
gi 1821658505 231 ---TPLANGTPEQI 241
Cdd:COG3845 481 vgeVPAAEATREEI 494
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-245 |
3.48e-20 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 88.97 E-value: 3.48e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRFGG----LLAVNNVSLELREREIVSLIGPNGAGKT----TVFNCLTGFYKPTGGTIMLRDQHLEGL 72
Cdd:COG4172 2 MSMPLLSVEDLSVAFGQgggtVEAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDLLGL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 73 PGQQI-----ARMGVVrtFQhvrlfrE-MT-----------VIENLLVaqHQQLksglfsgllktpafRRAhsEALDRAA 135
Cdd:COG4172 82 SERELrrirgNRIAMI--FQ------EpMTslnplhtigkqIAEVLRL--HRGL--------------SGA--AARARAL 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 136 TWLERINLLQHANRQAgnlAY-----GDQR-RLEIARCMVTQPAILMLDEPaaglnpkeTKELD--------ELIVELRN 201
Cdd:COG4172 136 ELLERVGIPDPERRLD---AYphqlsGGQRqRVMIAMALANEPDLLIADEP--------TTALDvtvqaqilDLLKDLQR 204
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1821658505 202 HHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNP 245
Cdd:COG4172 205 ELGMALLLITHDLGVVRRFADRVAVMRQGEIVEQGPTAELFAAP 248
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
20-240 |
4.08e-20 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 89.07 E-value: 4.08e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQI-ARMGVVrtFQHVRLFrEMTVI 98
Cdd:COG1132 355 VLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLESLrRQIGVV--PQDTFLF-SGTIR 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 99 ENLLV----AQHQQLKsglfsgllktpafrrahsEALDRAATWlERINLL-----QHANRQAGNLAyGDQR-RLEIARCM 168
Cdd:COG1132 432 ENIRYgrpdATDEEVE------------------EAAKAAQAH-EFIEALpdgydTVVGERGVNLS-GGQRqRIAIARAL 491
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1821658505 169 VTQPAILMLDEPAAGLNPKETKELDELIVELRnhHNTTILLIEHDMKLVMGiSDRIYVVNQGTPLANGTPEQ 240
Cdd:COG1132 492 LKDPPILILDEATSALDTETEALIQEALERLM--KGRTTIVIAHRLSTIRN-ADRILVLDDGRIVEQGTHEE 560
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
20-251 |
4.19e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 86.76 E-value: 4.19e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIML---------RDQHLEglPGQQiaRMGVVRTFQHVR 90
Cdd:PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVdditithktKDKYIR--PVRK--RIGMVFQFPESQ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 91 LF-----REMTVIENLLVAQHQQLKSGLFSgLLKTPAFRRahsealdraatwleriNLLQHANRQagnLAYGDQRRLEIA 165
Cdd:PRK13646 98 LFedtveREIIFGPKNFKMNLDEVKNYAHR-LLMDLGFSR----------------DVMSQSPFQ---MSGGQMRKIAIV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 166 RCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNP 245
Cdd:PRK13646 158 SILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDK 237
|
....*.
gi 1821658505 246 DVIRAY 251
Cdd:PRK13646 238 KKLADW 243
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1-231 |
1.57e-19 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 87.04 E-value: 1.57e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLR--------DQHLEGL 72
Cdd:COG0488 311 LGKKVLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKLGetvkigyfDQHQEEL 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 73 PGqqiarmgvvrtfqhvrlfrEMTVIENL------LVAQH--QQLKSGLFSGllktpafrrahsealdraatwlerinll 144
Cdd:COG0488 391 DP-------------------DKTVLDELrdgapgGTEQEvrGYLGRFLFSG---------------------------- 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 145 QHANRQAGNLAYGDQRRLEIARCMVTQPAILMLDEPaaglnpkeTKELD----ELIVELRNHHNTTILLIEHDMKLVMGI 220
Cdd:COG0488 424 DDAFKPVGVLSGGEKARLALAKLLLSPPNVLLLDEP--------TNHLDietlEALEEALDDFPGTVLLVSHDRYFLDRV 495
|
250
....*....|.
gi 1821658505 221 SDRIYVVNQGT 231
Cdd:COG0488 496 ATRILEFEDGG 506
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
12-230 |
4.30e-19 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 83.00 E-value: 4.30e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 12 MMRF--------GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIA--RMG 81
Cdd:PRK10908 1 MIRFehvskaylGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPflRRQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 82 VVRTFQHVRLFREMTVIENLLVAqhqqlksgLFSGLLKTPAFRRAHSEALDRaatwlerINLLQHANRQAGNLAYGDQRR 161
Cdd:PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIP--------LIIAGASGDDIRRRVSAALDK-------VGLLDKAKNFPIQLSGGEQQR 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1821658505 162 LEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELrNHHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:PRK10908 146 VGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEF-NRVGVTVLMATHDIGLISRRSYRMLTLSDG 213
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
19-230 |
5.72e-19 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 82.52 E-value: 5.72e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 19 LAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMlrdqhLEGLPGQQiarmgvvrtFQHVRLFREMTvi 98
Cdd:cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVL-----LDGKPISQ---------YEHKYLHSKVS-- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 99 enlLVAQHQQLKSGLFS-----GLLKTPAFRRahSEALDRAATWlERINLLQH-----ANRQAGNLAYGDQRRLEIARCM 168
Cdd:cd03248 92 ---LVGQEPVLFARSLQdniayGLQSCSFECV--KEAAQKAHAH-SFISELASgydteVGEKGSQLSGGQKQRVAIARAL 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1821658505 169 VTQPAILMLDEPAAGLNPKETKELDELIVElrNHHNTTILLIEHDMKLVMGiSDRIYVVNQG 230
Cdd:cd03248 166 IRNPQVLILDEATSALDAESEQQVQQALYD--WPERRTVLVIAHRLSTVER-ADQILVLDGG 224
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
4-245 |
8.24e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 82.78 E-value: 8.24e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 4 PLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTG-----GTIMLRDQHL-EGLPGQQI 77
Cdd:PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESevrveGRVEFFNQNIyERRVNLNR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 78 ARMGVVRTFQHVRLFrEMTVIENL-----LVAQHQQLKsglFSGLLKTpafrrahseALDRAATWLERINLLqhaNRQAG 152
Cdd:PRK14258 86 LRRQVSMVHPKPNLF-PMSVYDNVaygvkIVGWRPKLE---IDDIVES---------ALKDADLWDEIKHKI---HKSAL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 153 NLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISD--RIYVVNQ- 229
Cdd:PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDftAFFKGNEn 229
|
250
....*....|....*...
gi 1821658505 230 --GTPLANGTPEQIRNNP 245
Cdd:PRK14258 230 riGQLVEFGLTKKIFNSP 247
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
11-246 |
8.48e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 82.58 E-value: 8.48e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 11 LMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTV---FNCL---------TGFYKPTGGTIMLRDQHleglPGQQIA 78
Cdd:PRK14267 10 LRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLlrtFNRLlelneearvEGEVRLFGRNIYSPDVD----PIEVRR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 79 RMGVVrtFQHVRLFREMTVIENLLVAqhqqLKsglFSGLLKTPAFRRAHSE-ALDRAATWLERINLLqhaNRQAGNLAYG 157
Cdd:PRK14267 86 EVGMV--FQYPNPFPHLTIYDNVAIG----VK---LNGLVKSKKELDERVEwALKKAALWDEVKDRL---NDYPSNLSGG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 158 DQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHntTILLIEHDMKLVMGISDRIYVVNQGTPLANGT 237
Cdd:PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEY--TIVLVTHSPAQAARVSDYVAFLYLGKLIEVGP 231
|
....*....
gi 1821658505 238 PEQIRNNPD 246
Cdd:PRK14267 232 TRKVFENPE 240
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
4-196 |
9.76e-19 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 81.46 E-value: 9.76e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 4 PLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLE-GLPGQQIARMGv 82
Cdd:PRK13539 1 MMLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDdPDVAEACHYLG- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 83 vrtfqHVR-LFREMTVIENLLVAQhqqlksglfsgllktpAFRRAHSEALDRAatwLERINLLQHANRQAGNLAYGDQRR 161
Cdd:PRK13539 80 -----HRNaMKPALTVAENLEFWA----------------AFLGGEELDIAAA---LEAVGLAPLAHLPFGYLSAGQKRR 135
|
170 180 190
....*....|....*....|....*....|....*
gi 1821658505 162 LEIARCMVTQPAILMLDEPAAGLNPKETKELDELI 196
Cdd:PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELI 170
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
4-230 |
1.46e-18 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 82.03 E-value: 1.46e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 4 PLLsVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTImlrdqhLEGLPGQQIARMGVV 83
Cdd:PRK11247 12 PLL-LNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL------LAGTAPLAEAREDTR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 84 RTFQHVRLFREMTVIENLlvaqhqqlksglfsGLLKTPAFRRAHSEALdraatwlERINLLQHANRQAGNLAYGDQRRLE 163
Cdd:PRK11247 85 LMFQDARLLPWKKVIDNV--------------GLGLKGQWRDAALQAL-------AAVGLADRANEWPAALSGGQKQRVA 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1821658505 164 IARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:PRK11247 144 LARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEG 210
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
1-253 |
1.57e-18 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 82.24 E-value: 1.57e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRF-GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRdqhleGLPGQQIAR 79
Cdd:PRK15056 2 MQQAGIVVNDVTVTWrNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISIL-----GQPTRQALQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 80 MGVVrtfQHVRLFREMTVIENLLVAQHQQLKSGLFSGLLKTPafrRAHSEALDRAAtwLERINLLQHANRQAGNLAYGDQ 159
Cdd:PRK15056 77 KNLV---AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRA---KKRDRQIVTAA--LARVDMVEFRHRQIGELSGGQK 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 160 RRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVnQGTPLANGTPE 239
Cdd:PRK15056 149 KRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTE 226
|
250
....*....|....
gi 1821658505 240 QIRNNPDVIRAYLG 253
Cdd:PRK15056 227 TTFTAENLELAFSG 240
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
20-248 |
1.84e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 82.36 E-value: 1.84e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFY-KPTGGTIMLRDQHLEGLPG-QQIARM----GVVRTFQHVRLFR 93
Cdd:PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIiSETGQTIVGDYAIPANLKKiKEVKRLrkeiGLVFQFPEYQLFQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 94 EmtVIEnllvaqhqqlksglfsgllKTPAFRRAH-----SEALDRAATWLERINLLQ-HANRQAGNLAYGDQRRLEIARC 167
Cdd:PRK13645 106 E--TIE-------------------KDIAFGPVNlgenkQEAYKKVPELLKLVQLPEdYVKRSPFELSGGQKRRVALAGI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 168 MVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNPDV 247
Cdd:PRK13645 165 IAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQEL 244
|
.
gi 1821658505 248 I 248
Cdd:PRK13645 245 L 245
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
20-236 |
1.85e-18 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 81.10 E-value: 1.85e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMlrdqhLEGLPGQQI------ARMGVVRtfQHVRLF- 92
Cdd:cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL-----LDGTDIRQLdpadlrRNIGYVP--QDVTLFy 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 93 ---REMTVIENLLVAQHQQLKSGLFSGLLKtpaFRRAHSEALDRAATwlERINLLQHANRQAgnlaygdqrrLEIARCMV 169
Cdd:cd03245 92 gtlRDNITLGAPLADDERILRAAELAGVTD---FVNKHPNGLDLQIG--ERGRGLSGGQRQA----------VALARALL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1821658505 170 TQPAILMLDEPAAGLNPKETKELDELIVELRNHhnTTILLIEHDMKLvMGISDRIYVVNQGTPLANG 236
Cdd:cd03245 157 NDPPILLLDEPTSAMDMNSEERLKERLRQLLGD--KTLIIITHRPSL-LDLVDRIIVMDSGRIVADG 220
|
|
| nickel_nikD |
TIGR02770 |
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ... |
20-245 |
2.15e-18 |
|
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131817 [Multi-domain] Cd Length: 230 Bit Score: 81.26 E-value: 2.15e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKP----TGGTIMLRDQHLEGLPGQQIArmgVVRTFQHVR-LFre 94
Cdd:TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPgltqTSGEILLDGRPLLPLSIRGRH---IATIMQNPRtAF-- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 95 mtvieNLLVAQHQQLKSGLFSgLLKTpafrraHSEALDRAATWLERINLLQHA---NRQAGNLAYGDQRRLEIARCMVTQ 171
Cdd:TIGR02770 76 -----NPLFTMGNHAIETLRS-LGKL------SKQARALILEALEAVGLPDPEevlKKYPFQLSGGMLQRVMIALALLLE 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1821658505 172 PAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNP 245
Cdd:TIGR02770 144 PPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNP 217
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
23-250 |
2.89e-18 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 83.62 E-value: 2.89e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 23 NVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMlrdqhLEGLPgqqiarmgvVRTFQHVRLFREMTvienlL 102
Cdd:TIGR00958 499 GLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL-----LDGVP---------LVQYDHHYLHRQVA-----L 559
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 103 VAQHQQLKSGLFS-----GLLKTPafrRAHSEALDRAATWLERI-NLLQHANRQAGN----LAYGDQRRLEIARCMVTQP 172
Cdd:TIGR00958 560 VGQEPVLFSGSVReniayGLTDTP---DEEIMAAAKAANAHDFImEFPNGYDTEVGEkgsqLSGGQKQRIAIARALVRKP 636
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1821658505 173 AILMLDEPAAGLNpketKELDELIVELRNHHNTTILLIEHDMKLVMGiSDRIYVVNQGTPLANGTPEQIRNNPDVIRA 250
Cdd:TIGR00958 637 RVLILDEATSALD----AECEQLLQESRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMEDQGCYKH 709
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
4-213 |
3.52e-18 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 83.18 E-value: 3.52e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 4 PLLSVSGLMMRF-GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARmgV 82
Cdd:TIGR02868 333 PTLELRDLSAGYpGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRR--R 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 83 VRTF-QHVRLFrEMTVIENLLVAqhqqlksglfsgllKTPAFRRAHSEALDRA--ATWLERIN------LLQHANRQAGn 153
Cdd:TIGR02868 411 VSVCaQDAHLF-DTTVRENLRLA--------------RPDATDEELWAALERVglADWLRALPdgldtvLGEGGARLSG- 474
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 154 layGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIveLRNHHNTTILLIEHD 213
Cdd:TIGR02868 475 ---GERQRLALARALLADAPILLLDEPTEHLDAETADELLEDL--LAALSGRTVVLITHH 529
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
5-241 |
4.03e-18 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 83.23 E-value: 4.03e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 5 LLSVSGLMMRFGG--LLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIaRMGV 82
Cdd:TIGR02203 330 DVEFRNVTFRYPGrdRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASL-RRQV 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 83 VRTFQHVRLFREmTVIENLLVAQHQQLKsglfsgllktpafrRAHSEALDRAATWLERINLL-----QHANRQAGNLAYG 157
Cdd:TIGR02203 409 ALVSQDVVLFND-TIANNIAYGRTEQAD--------------RAEIERALAAAYAQDFVDKLplgldTPIGENGVLLSGG 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 158 DQRRLEIARCMVTQPAILMLDEPAAGLNPKETKE----LDELIvelrnhHNTTILLIEHDMKLVMGiSDRIYVVNQGTPL 233
Cdd:TIGR02203 474 QRQRLAIARALLKDAPILILDEATSALDNESERLvqaaLERLM------QGRTTLVIAHRLSTIEK-ADRIVVMDDGRIV 546
|
....*...
gi 1821658505 234 ANGTPEQI 241
Cdd:TIGR02203 547 ERGTHNEL 554
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-240 |
1.06e-17 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 81.79 E-value: 1.06e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 2 SQPLLSVSGLMMRF--GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQI-A 78
Cdd:PRK11160 335 DQVSLTLNNVSFTYpdQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALrQ 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 79 RMGVVRtfQHVRLFREmTVIENLLVAQHQ----QL-----KSGLfSGLLKTPafrrahsEALDraaTWlerinlLQHANR 149
Cdd:PRK11160 415 AISVVS--QRVHLFSA-TLRDNLLLAAPNasdeALievlqQVGL-EKLLEDD-------KGLN---AW------LGEGGR 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 150 QagnLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNpketKELDELIVELRNHH--NTTILLIEHDMKLvMGISDRIYVV 227
Cdd:PRK11160 475 Q---LSGGEQRRLGIARALLHDAPLLLLDEPTEGLD----AETERQILELLAEHaqNKTVLMITHRLTG-LEQFDRICVM 546
|
250
....*....|...
gi 1821658505 228 NQGTPLANGTPEQ 240
Cdd:PRK11160 547 DNGQIIEQGTHQE 559
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
23-230 |
1.34e-17 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 81.64 E-value: 1.34e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 23 NVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVV---RTFQHVRLFREMTVIE 99
Cdd:PRK15439 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVylpEDRQSSGLYLDAPLAW 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 100 NLLVAQHQQLksglfsGLLKTPAFRRAHSEALDRAatwlerINL-LQHANRQAGNLAYGDQRRLEIARCMVTQPAILMLD 178
Cdd:PRK15439 361 NVCALTHNRR------GFWIKPARENAVLERYRRA------LNIkFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVD 428
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1821658505 179 EPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:PRK15439 429 EPTRGVDVSARNDIYQLIRSIAA-QNVAVLFISSDLEEIEQMADRVLVMHQG 479
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
15-241 |
2.12e-17 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 80.93 E-value: 2.12e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 15 FGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVVRTFQHVRLFRE 94
Cdd:PRK10982 8 FPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 95 MTVIENLLVAQHQqlKSGLFSGllktpafrraHSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPAI 174
Cdd:PRK10982 88 RSVMDNMWLGRYP--TKGMFVD----------QDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKI 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1821658505 175 LMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQG-----TPLANGTPEQI 241
Cdd:PRK10982 156 VIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKMEEIFQLCDEITILRDGqwiatQPLAGLTMDKI 226
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-245 |
2.97e-17 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 78.98 E-value: 2.97e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 2 SQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFY-KPTG----GTIMLRDQHLEGLPGQQ 76
Cdd:PRK14271 18 AAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNdKVSGyrysGDVLLGGRSIFNYRDVL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 77 IARMGVVRTFQHVRLFrEMTVIENLL--VAQHQqlksglfsgLLKTPAFRRAHSEALDRAATWLERINLLQHANRQagnL 154
Cdd:PRK14271 98 EFRRRVGMLFQRPNPF-PMSIMDNVLagVRAHK---------LVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFR---L 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 155 AYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHhnTTILLIEHDMKLVMGISDRIYVVNQGTPLA 234
Cdd:PRK14271 165 SGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR--LTVIIVTHNLAQAARISDRAALFFDGRLVE 242
|
250
....*....|.
gi 1821658505 235 NGTPEQIRNNP 245
Cdd:PRK14271 243 EGPTEQLFSSP 253
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
21-230 |
4.23e-17 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 80.05 E-value: 4.23e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 21 VNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVVRTFQHVR---LFREMTV 97
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKrdgLVLGMSV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 98 IENLLVAQHQQLKSGlfSGLLKtpafrraHSEALDRAATWLERINLLQHANRQA-GNLAYGDQRRLEIARCMVTQPAILM 176
Cdd:PRK10762 348 KENMSLTALRYFSRA--GGSLK-------HADEQQAVSDFIRLFNIKTPSMEQAiGLLSGGNQQKVAIARGLMTRPKVLI 418
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1821658505 177 LDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:PRK10762 419 LDEPTRGVDVGAKKEIYQLINQFKA-EGLSIILVSSEMPEVLGMSDRILVMHEG 471
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
21-241 |
5.34e-17 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 77.75 E-value: 5.34e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 21 VNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVVRTFQHvrLFRE-MTVIE 99
Cdd:PRK11231 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHH--LTPEgITVRE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 100 nlLVAQHQQLKSGLFSGLlktpafrRAHSEALDRAAtwLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPAILMLDE 179
Cdd:PRK11231 96 --LVAYGRSPWLSLWGRL-------SAEDNARVNQA--MEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDE 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1821658505 180 PAAGLNPKETKELDELIVELRNHHNTTILLIeHDMKLVMGISDRIYVVNQGTPLANGTPEQI 241
Cdd:PRK11231 165 PTTYLDINHQVELMRLMRELNTQGKTVVTVL-HDLNQASRYCDHLVVLANGHVMAQGTPEEV 225
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
11-253 |
5.42e-17 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 78.10 E-value: 5.42e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 11 LMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIAR-MGVVRtfQHV 89
Cdd:PRK10253 13 LTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARrIGLLA--QNA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 90 RLFREMTVIEnlLVAQ----HQqlksglfsgllktPAFRRAHSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIA 165
Cdd:PRK10253 91 TTPGDITVQE--LVARgrypHQ-------------PLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 166 RCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRnNP 245
Cdd:PRK10253 156 MVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV-TA 234
|
....*...
gi 1821658505 246 DVIRAYLG 253
Cdd:PRK10253 235 ELIERIYG 242
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
20-249 |
6.12e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 78.30 E-value: 6.12e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPtggtimlrdqhlEGLPGQQIARMGVVRTFQHVRLFREMTVI- 98
Cdd:PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP------------DDNPNSKITVDGITLTAKTVWDIREKVGIv 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 99 ----ENLLVAQhqQLKSGLFSGLLKTPAFRrahSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPAI 174
Cdd:PRK13640 90 fqnpDNQFVGA--TVGDDVAFGLENRAVPR---PEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKI 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1821658505 175 LMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGiSDRIYVVNQGTPLANGTPEQIRNNPDVIR 249
Cdd:PRK13640 165 IILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANM-ADQVLVLDDGKLLAQGSPVEIFSKVEMLK 238
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
2-245 |
7.51e-17 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 79.51 E-value: 7.51e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 2 SQPLLSVSGLMMRF---GGLL--------AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLE 70
Cdd:PRK10261 310 GEPILQVRNLVTRFplrSGLLnrvtrevhAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 71 GLPGQQIA--RMGVVRTFQ--HVRLFREMTV----IENLLVaqhqqlkSGLFSGllktpafrrahSEALDRAATWLERIN 142
Cdd:PRK10261 390 TLSPGKLQalRRDIQFIFQdpYASLDPRQTVgdsiMEPLRV-------HGLLPG-----------KAAAARVAWLLERVG 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 143 LL-QHANRQAGNLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGIS 221
Cdd:PRK10261 452 LLpEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERIS 531
|
250 260
....*....|....*....|....
gi 1821658505 222 DRIYVVNQGTPLANGTPEQIRNNP 245
Cdd:PRK10261 532 HRVAVMYLGQIVEIGPRRAVFENP 555
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
15-230 |
7.80e-17 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 78.92 E-value: 7.80e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 15 FGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGqqiARMGVVRTFQHVRLFRE 94
Cdd:PRK11000 13 YGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP---AERGVGMVFQSYALYPH 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 95 MTVIENLLVAqhqqLKsglFSGLLKTPAFRRahseaLDRAATWLERINLLQhanRQAGNLAYGDQRRLEIARCMVTQPAI 174
Cdd:PRK11000 90 LSVAENMSFG----LK---LAGAKKEEINQR-----VNQVAEVLQLAHLLD---RKPKALSGGQRQRVAIGRTLVAEPSV 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1821658505 175 LMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:PRK11000 155 FLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAG 210
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
19-241 |
7.96e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 77.82 E-value: 7.96e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 19 LAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLR--DQHLEGLPGQQIARMGVVrtFQH-----VRL 91
Cdd:PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDglDTSDEENLWDIRNKAGMV--FQNpdnqiVAT 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 92 FREMTVI---ENLLVAQhqqlksglfsgllktpafrrahSEALDRAATWLERINLLQHaNRQAGNLAYGDQR-RLEIARC 167
Cdd:PRK13633 102 IVEEDVAfgpENLGIPP----------------------EEIRERVDESLKKVGMYEY-RRHAPHLLSGGQKqRVAIAGI 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1821658505 168 MVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGiSDRIYVVNQGTPLANGTPEQI 241
Cdd:PRK13633 159 LAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEI 231
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
7-250 |
8.78e-17 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 77.05 E-value: 8.78e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 7 SVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIAR-MGVVRT 85
Cdd:COG4604 3 EIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELAKrLAILRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 86 FQHV--RLfremTVIEnlLVaqhqqlksglfsgllktpAFRR-AHS---------EALDRAatwLERINLLQHANRQAGN 153
Cdd:COG4604 83 ENHInsRL----TVRE--LV------------------AFGRfPYSkgrltaedrEIIDEA---IAYLDLEDLADRYLDE 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 154 LAyGDQR-RLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTP 232
Cdd:COG4604 136 LS-GGQRqRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDGRV 214
|
250
....*....|....*...
gi 1821658505 233 LANGTPEQIRnNPDVIRA 250
Cdd:COG4604 215 VAQGTPEEII-TPEVLSD 231
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
2-245 |
9.24e-17 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 79.13 E-value: 9.24e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 2 SQPLLSVSGLMMRF----GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI----ML---RDQHLE 70
Cdd:PRK10261 9 ARDVLAVENLNIAFmqeqQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVqcdkMLlrrRSRQVI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 71 GLPGQQIARMGVVRTFQHVRLFRE-MTVIENLLVAQHQQLKS-GLFSGLlktpafrrAHSEALDRAATWLERINLLQHA- 147
Cdd:PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEpMTSLNPVFTVGEQIAESiRLHQGA--------SREEAMVEAKRMLDQVRIPEAQt 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 148 --NRQAGNLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIY 225
Cdd:PRK10261 161 ilSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVL 240
|
250 260
....*....|....*....|
gi 1821658505 226 VVNQGTPLANGTPEQIRNNP 245
Cdd:PRK10261 241 VMYQGEAVETGSVEQIFHAP 260
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
20-240 |
1.12e-16 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 76.50 E-value: 1.12e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIAR-MGVVRtfQHVRLFREmTVI 98
Cdd:cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRqIGLVS--QDVFLFND-TVA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 99 ENLLVAqhqqlksglfsgllkTPAFRRAHSEALDRAATWLERI-NLLQHANRQAG----NLAYGDQRRLEIARCMVTQPA 173
Cdd:cd03251 94 ENIAYG---------------RPGATREEVEEAARAANAHEFImELPEGYDTVIGergvKLSGGQRQRIAIARALLKDPP 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1821658505 174 ILMLDEPAAGLNPKETKELDELIVELRNhhNTTILLIEHDMKLVMGiSDRIYVVNQGTPLANGTPEQ 240
Cdd:cd03251 159 ILILDEATSALDTESERLVQAALERLMK--NRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEE 222
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-245 |
1.26e-16 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 77.01 E-value: 1.26e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 2 SQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLegLPGQQIARMG 81
Cdd:PRK14246 7 AEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVL--YFGKDIFQID 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 82 VVR-------TFQHVRLFREMTVIENLLVAqhqqLKSglfSGLLKTPAFRRAHSEALDRAATWLERINLLqhaNRQAGNL 154
Cdd:PRK14246 85 AIKlrkevgmVFQQPNPFPHLSIYDNIAYP----LKS---HGIKEKREIKKIVEECLRKVGLWKEVYDRL---NSPASQL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 155 AYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHhnTTILLIEHDMKLVMGISDRIYVVNQGTPLA 234
Cdd:PRK14246 155 SGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELVE 232
|
250
....*....|.
gi 1821658505 235 NGTPEQIRNNP 245
Cdd:PRK14246 233 WGSSNEIFTSP 243
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
24-228 |
1.53e-16 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 75.97 E-value: 1.53e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 24 VSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARM---GVVRTFQHVRLFREMTVIEN 100
Cdd:PRK10584 29 VELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLrakHVGFVFQSFMLIPTLNALEN 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 101 LlvaqhqQLksglfsgllktPAFRRAHSE--ALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPAILMLD 178
Cdd:PRK10584 109 V------EL-----------PALLRGESSrqSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFAD 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1821658505 179 EPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVN 228
Cdd:PRK10584 172 EPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVN 221
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
22-240 |
1.77e-16 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 76.04 E-value: 1.77e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 22 NNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQI-ARMGVVRtfQHVRLFrEMTVIEN 100
Cdd:cd03249 20 KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLrSQIGLVS--QEPVLF-DGTIAEN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 101 LLVaqhqqlksGLFSgllktpafrrAHSEALDRA---ATWLERINLLQHA-NRQAGN----LAYGDQRRLEIARCMVTQP 172
Cdd:cd03249 97 IRY--------GKPD----------ATDEEVEEAakkANIHDFIMSLPDGyDTLVGErgsqLSGGQKQRIAIARALLRNP 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1821658505 173 AILMLDEPAAGLNPKETKELDELIVELRNhhNTTILLIEHDMKLVMGiSDRIYVVNQGTPLANGTPEQ 240
Cdd:cd03249 159 KILLLDEATSALDAESEKLVQEALDRAMK--GRTTIVIAHRLSTIRN-ADLIAVLQNGQVVEQGTHDE 223
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
20-255 |
2.99e-16 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 75.98 E-value: 2.99e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLE----GLPGQQIaRMgvvrtfqhvrLFREM 95
Cdd:PRK15112 28 AVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHfgdySYRSQRI-RM----------IFQDP 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 96 TVIENLLVAQHQQLKSGLFSGLLKTPAFRRahsealDRAATWLERINLL-QHANRQAGNLAYGDQRRLEIARCMVTQPAI 174
Cdd:PRK15112 97 STSLNPRQRISQILDFPLRLNTDLEPEQRE------KQIIETLRQVGLLpDHASYYPHMLAPGQKQRLGLARALILRPKV 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 175 LMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNP------DVI 248
Cdd:PRK15112 171 IIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASPlheltkRLI 250
|
....*..
gi 1821658505 249 RAYLGEA 255
Cdd:PRK15112 251 AGHFGEA 257
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
19-238 |
3.56e-16 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 74.84 E-value: 3.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 19 LAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQI-ARMGVVRtfQHVRLFrEMTV 97
Cdd:cd03244 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLrSRISIIP--QDPVLF-SGTI 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 98 IENLlvaqhqqlksglfsgllktPAFRRAHSEALDRAatwLERINLLQHANRQAG-----------NLAYGdQRRL-EIA 165
Cdd:cd03244 95 RSNL-------------------DPFGEYSDEELWQA---LERVGLKEFVESLPGgldtvveeggeNLSVG-QRQLlCLA 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1821658505 166 RCMVTQPAILMLDEPAAGLNPketkELDELIVE-LRNH-HNTTILLIEHDMKLVMGiSDRIYVVNQGTPLANGTP 238
Cdd:cd03244 152 RALLRKSKILVLDEATASVDP----ETDALIQKtIREAfKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDSP 221
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
4-230 |
4.01e-16 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 75.49 E-value: 4.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 4 PLLSVSGLMMRF--GGLLA-------VNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPG 74
Cdd:PRK10419 2 TLLNVSGLSHHYahGGLSGkhqhqtvLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 75 QQIarmgvvRTFQH-VRLfremtVIENLLVAQHQQLKSGLFSG-----LLKTPAFRRAHsealdRAATWLERINL-LQHA 147
Cdd:PRK10419 82 AQR------KAFRRdIQM-----VFQDSISAVNPRKTVREIIReplrhLLSLDKAERLA-----RASEMLRAVDLdDSVL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 148 NRQAGNLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVV 227
Cdd:PRK10419 146 DKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVM 225
|
...
gi 1821658505 228 NQG 230
Cdd:PRK10419 226 DNG 228
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
20-242 |
5.35e-16 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 77.36 E-value: 5.35e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLrdqhleglPGQQIArMGVVRTFQHVRLFREMTVIE 99
Cdd:TIGR01257 1954 AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATV--------AGKSIL-TNISDVHQNMGYCPQFDAID 2024
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 100 NLLVAQHQQLksgLFSGLLKTPAfrrahsEALDRAATW-LERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPAILMLD 178
Cdd:TIGR01257 2025 DLLTGREHLY---LYARLRGVPA------EEIEKVANWsIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLD 2095
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1821658505 179 EPAAGLNPKETKELDELIVELRnHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIR 242
Cdd:TIGR01257 2096 EPTTGMDPQARRMLWNTIVSII-REGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLK 2158
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
19-230 |
6.36e-16 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 73.12 E-value: 6.36e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 19 LAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVVRtfQHVRLFrEMTVI 98
Cdd:cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLN--QRPYLF-DTTLR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 99 ENLlvaqhqqlksGL-FSGllktpafrrahsealdraatwlerinllqhanrqagnlayGDQRRLEIARCMVTQPAILML 177
Cdd:cd03247 93 NNL----------GRrFSG----------------------------------------GERQRLALARILLQDAPIVLL 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1821658505 178 DEPAAGLNPKETKELDELIVE-LRNHhntTILLIEHDMKlvmGIS--DRIYVVNQG 230
Cdd:cd03247 123 DEPTVGLDPITERQLLSLIFEvLKDK---TLIWITHHLT---GIEhmDKILFLENG 172
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
21-241 |
9.22e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 74.77 E-value: 9.22e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 21 VNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIAR-MGVVrtFQHV-RLFREMTVI 98
Cdd:PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHkIGMV--FQNPdNQFVGATVE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 99 ENLLVAQHQQlksglfsGLlktpafrrAHSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPAILMLD 178
Cdd:PRK13650 101 DDVAFGLENK-------GI--------PHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILD 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1821658505 179 EPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVmGISDRIYVVNQGTPLANGTPEQI 241
Cdd:PRK13650 166 EATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPREL 227
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
6-242 |
1.03e-15 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 75.54 E-value: 1.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTtvfncltgfykptggtimlRDQHLEGLPGQQIARmgvvrt 85
Cdd:NF000106 14 VEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**-------------------RGALPAHV*GPDAGR------ 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 86 fqhvRLFREMTVIENL-----LVAQHQQLKSGL---FSGLLKTPAFRR----AHSEALDRAATWLERINLLQHANRQAGN 153
Cdd:NF000106 69 ----RPWRF*TWCANRralrrTIG*HRPVR*GRresFSGRENLYMIGR*ldlSRKDARARADELLERFSLTEAAGRAAAK 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 154 LAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKEL-DELIVELRNhhNTTILLIEHDMKLVMGISDRIYVVNQGTP 232
Cdd:NF000106 145 YSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVwDEVRSMVRD--GATVLLTTQYMEEAEQLAHELTVIDRGRV 222
|
250
....*....|
gi 1821658505 233 LANGTPEQIR 242
Cdd:NF000106 223 IADGKVDELK 232
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-245 |
1.06e-15 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 75.15 E-value: 1.06e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRF----GGLLAVNNVSLELREREIVSLIGPNGAGKT-TVFnCLTGFYKPTG---GTIMLRDQHLEGL 72
Cdd:PRK09473 8 QADALLDVKDLRVTFstpdGDVTAVNDLNFSLRAGETLGIVGESGSGKSqTAF-ALMGLLAANGrigGSATFNGREILNL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 73 PGQQIARMgvvRTFQHVRLFRE-MTVIeNLLVAQHQQLKSGLF--SGLLKTPAFRRAhSEALDrAATWLE---RINLLQH 146
Cdd:PRK09473 87 PEKELNKL---RAEQISMIFQDpMTSL-NPYMRVGEQLMEVLMlhKGMSKAEAFEES-VRMLD-AVKMPEarkRMKMYPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 147 anrqagNLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYV 226
Cdd:PRK09473 161 ------EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLV 234
|
250
....*....|....*....
gi 1821658505 227 VNQGTPLANGTPEQIRNNP 245
Cdd:PRK09473 235 MYAGRTMEYGNARDVFYQP 253
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
18-245 |
1.86e-15 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 74.36 E-value: 1.86e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 18 LLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQI--ARMGVVRTFQH--VRLFR 93
Cdd:PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWraVRSDIQMIFQDplASLNP 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 94 EMTVIEnlLVAQHqqlksglfsglLKT--PAFRRAhsEALDRAATWLERINLLQHA-NRQAGNLAYGDQRRLEIARCMVT 170
Cdd:PRK15079 114 RMTIGE--IIAEP-----------LRTyhPKLSRQ--EVKDRVKAMMLKVGLLPNLiNRYPHEFSGGQCQRIGIARALIL 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1821658505 171 QPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNP 245
Cdd:PRK15079 179 EPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNP 253
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
21-241 |
2.03e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 73.97 E-value: 2.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 21 VNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIAR-MGVVrtFQHV-RLFREMTVI 98
Cdd:PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRkIGMV--FQNPdNQFVGATVE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 99 ENLLVAQHQQlksglfsGLLKtpafrrahSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPAILMLD 178
Cdd:PRK13642 101 DDVAFGMENQ-------GIPR--------EEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILD 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1821658505 179 EPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGiSDRIYVVNQGTPLANGTPEQI 241
Cdd:PRK13642 166 ESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSEL 227
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
22-240 |
2.26e-15 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 75.08 E-value: 2.26e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 22 NNVSLELREREIVSLIGPNGAGKTTVFNCLTgFYKPTG----GTIMLRDQHLEGlpGQQIARMGVVRtfQHVRLFREMTV 97
Cdd:TIGR00955 42 KNVSGVAKPGELLAVMGSSGAGKTTLMNALA-FRSPKGvkgsGSVLLNGMPIDA--KEMRAISAYVQ--QDDLFIPTLTV 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 98 IENLlvaqhqqlksgLFSGLLKTPAfRRAHSEALDRAATWLERINLLQHANRQAG------NLAYGDQRRLEIARCMVTQ 171
Cdd:TIGR00955 117 REHL-----------MFQAHLRMPR-RVTKKEKRERVDEVLQALGLRKCANTRIGvpgrvkGLSGGERKRLAFASELLTD 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1821658505 172 PAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQ 240
Cdd:TIGR00955 185 PPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQ 253
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
18-212 |
4.45e-15 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 71.92 E-value: 4.45e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 18 LLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTG---FYKPTGGTIMLRDQHLEglPGQQIARMGVVRtfQHVRLFRE 94
Cdd:cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGrveGGGTTSGQILFNGQPRK--PDQFQKCVAYVR--QDDILLPG 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 95 MTVIENLLvaqhqqlksglFSGLLKTPA-FRRAHSEALDrAATWLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPA 173
Cdd:cd03234 96 LTVRETLT-----------YTAILRLPRkSSDAIRKKRV-EDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPK 163
|
170 180 190
....*....|....*....|....*....|....*....
gi 1821658505 174 ILMLDEPAAGLNPKETKELDELIVELRnHHNTTILLIEH 212
Cdd:cd03234 164 VLILDEPTSGLDSFTALNLVSTLSQLA-RRNRIVILTIH 201
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
20-230 |
5.42e-15 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 74.00 E-value: 5.42e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVVRTFQHVR---LFREMT 96
Cdd:PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRstgIYAYLD 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 97 VIENLLVAQHQQLKSGLfsGLLKTPAFRRAHSEALDRAatwleRINLLQHANrQAGNLAYGDQRRLEIARCMVTQPAILM 176
Cdd:PRK10982 343 IGFNSLISNIRNYKNKV--GLLDNSRMKSDTQWVIDSM-----RVKTPGHRT-QIGSLSGGNQQKVIIGRWLLTQPEILM 414
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1821658505 177 LDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:PRK10982 415 LDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIIISSEMPELLGITDRILVMSNG 467
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
6-185 |
6.83e-15 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 70.98 E-value: 6.83e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEglpgqqiarmgvvrt 85
Cdd:cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLD--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 86 fqhvrlFREMTVIENLLVAQHQQLKSGLFSGLLKTPAFRRAHSEalDRAATWLERINLLQHANRQAGNLAYGDQRRLEIA 165
Cdd:cd03231 66 ------FQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSD--EQVEEALARVGLNGFEDRPVAQLSAGQQRRVALA 137
|
170 180
....*....|....*....|
gi 1821658505 166 RCMVTQPAILMLDEPAAGLN 185
Cdd:cd03231 138 RLLLSGRPLWILDEPTTALD 157
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
6-231 |
6.97e-15 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 69.40 E-value: 6.97e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTImlrdqhleglpgqqiarmgvvrt 85
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV----------------------- 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 86 fqhvrlfremTVIENLLVAQHQQLkSGlfsgllktpafrrahsealdraatwlerinllqhanrqagnlayGDQRRLEIA 165
Cdd:cd03221 58 ----------TWGSTVKIGYFEQL-SG--------------------------------------------GEKMRLALA 82
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1821658505 166 RCMVTQPAILMLDEPAAGLNPkETKELdeLIVELRNHHNtTILLIEHDMKLVMGISDRIYVVNQGT 231
Cdd:cd03221 83 KLLLENPNLLLLDEPTNHLDL-ESIEA--LEEALKEYPG-TVILVSHDRYFLDQVATKIIELEDGK 144
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
27-242 |
7.94e-15 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 71.67 E-value: 7.94e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 27 ELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTImlrdqhleGLPGQQIARMGvvrtfQHVRLFREMTVienllvaqh 106
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI--------EIELDTVSYKP-----QYIKADYEGTV--------- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 107 QQLKSGLFSGLLKTPAFRrahSEALDraATWLERInllqhANRQAGNLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNP 186
Cdd:cd03237 79 RDLLSSITKDFYTHPYFK---TEIAK--PLQIEQI-----LDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDV 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1821658505 187 KETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIyVVNQGTPLANG---TPEQIR 242
Cdd:cd03237 149 EQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRL-IVFEGEPSVNGvanPPQSLR 206
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
6-230 |
1.48e-14 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 69.55 E-value: 1.48e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGL--LAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMlrdqhLEGLPGQQIARMGVV 83
Cdd:cd03246 1 LEVENVSFRYPGAepPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR-----LDGADISQWDPNELG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 84 RTF----QHVRLFrEMTVIENLLvaqhqqlkSGlfsgllktpafrrahsealdraatwlerinllqhanrqagnlayGDQ 159
Cdd:cd03246 76 DHVgylpQDDELF-SGSIAENIL--------SG--------------------------------------------GQR 102
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1821658505 160 RRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVmGISDRIYVVNQG 230
Cdd:cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRPETL-ASADRILVLEDG 171
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
21-236 |
1.94e-14 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 69.50 E-value: 1.94e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 21 VNNVSLELREREIVSLIGPNGAGKTTVFNCLTG--FYKPTGGTIML--RDQHLEGLPgqqiARMGVVRtfQHVRLFREMT 96
Cdd:cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGrrTGLGVSGEVLIngRPLDKRSFR----KIIGYVP--QDDILHPTLT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 97 VIENLLVAQHqqLKSglFSGllktpafrrahsealdraatwlerinllqhanrqagnlayGDQRRLEIARCMVTQPAILM 176
Cdd:cd03213 99 VRETLMFAAK--LRG--LSG----------------------------------------GERKRVSIALELVSNPSLLF 134
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 177 LDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANG 236
Cdd:cd03213 135 LDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
24-241 |
3.90e-14 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 69.87 E-value: 3.90e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 24 VSLELREREIVSLIGPNGAGKTTVFNCLTGFYkPTGGTIMLRDQHLEGLPGQQIARMgvvRTF--QHVRLFREMTVIENL 101
Cdd:COG4138 15 ISAQVNAGELIHLIGPNGAGKSTLLARMAGLL-PGQGEILLNGRPLSDWSAAELARH---RAYlsQQQSPPFAMPVFQYL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 102 lvAQHQQLKsglfsgllktpafrrAHSEALDRA-ATWLERINLLQHANRQAGNLAYGDQRRLEIARCMVT-------QPA 173
Cdd:COG4138 91 --ALHQPAG---------------ASSEAVEQLlAQLAEALGLEDKLSRPLTQLSGGEWQRVRLAAVLLQvwptinpEGQ 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1821658505 174 ILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIeHDMKLVMGISDRIYVVNQGTPLANGTPEQI 241
Cdd:COG4138 154 LLLLDEPMNSLDVAQQAALDRLLRELCQQGITVVMSS-HDLNHTLRHADRVWLLKQGKLVASGETAEV 220
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
19-230 |
4.16e-14 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 71.20 E-value: 4.16e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 19 LAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIML-----RDQHLEGLPgQQIArmgVVRtfQHVRLFR 93
Cdd:PRK11176 357 PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLdghdlRDYTLASLR-NQVA---LVS--QNVHLFN 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 94 EmTVIENLLVAQHQQlksglfsgllktpaFRRAHSEALDRAATWLERINLLQHA-------NrqaGNLAYGDQR-RLEIA 165
Cdd:PRK11176 431 D-TIANNIAYARTEQ--------------YSREQIEEAARMAYAMDFINKMDNGldtvigeN---GVLLSGGQRqRIAIA 492
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1821658505 166 RCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhhNTTILLIEHDMKLVMGiSDRIYVVNQG 230
Cdd:PRK11176 493 RALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIEK-ADEILVVEDG 554
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
21-241 |
4.43e-14 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 71.11 E-value: 4.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 21 VNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKptG---GTIMLRDQHLE-GLPGQQIA-----------RMGVVRt 85
Cdd:PRK13549 278 VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP--GrweGEIFIDGKPVKiRNPQQAIAqgiamvpedrkRDGIVP- 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 86 fqhvrlfrEMTVIENLLVAQHQQLKSGlfsGLLKTPAFRRAHSEALDR----AATWLERInllqhanrqaGNLAYGDQRR 161
Cdd:PRK13549 355 --------VMGVGKNITLAALDRFTGG---SRIDDAAELKTILESIQRlkvkTASPELAI----------ARLSGGNQQK 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 162 LEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHnTTILLIEHDMKLVMGISDRIYVVNQGT-----PLANG 236
Cdd:PRK13549 414 AVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQG-VAIIVISSELPEVLGLSDRVLVMHEGKlkgdlINHNL 492
|
....*
gi 1821658505 237 TPEQI 241
Cdd:PRK13549 493 TQEQV 497
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
16-245 |
4.69e-14 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 70.32 E-value: 4.69e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 16 GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKP----TGGTIMLRDQHLEGLPGQQiaRMGVVRtfqhvrl 91
Cdd:COG4170 18 GRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDnwhvTADRFRWNGIDLLKLSPRE--RRKIIG------- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 92 fREMTVIenllvAQH------------QQLKSGLFSGLLKTPAFRRaHSEALDRAATWLERINLLQHA---NRQAGNLAY 156
Cdd:COG4170 89 -REIAMI-----FQEpsscldpsakigDQLIEAIPSWTFKGKWWQR-FKWRKKRAIELLHRVGIKDHKdimNSYPHELTE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 157 GDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANG 236
Cdd:COG4170 162 GECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTVESG 241
|
....*....
gi 1821658505 237 TPEQIRNNP 245
Cdd:COG4170 242 PTEQILKSP 250
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
24-251 |
5.61e-14 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 69.19 E-value: 5.61e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 24 VSLELREREIVSLIGPNGAGKTTVFNCLTGFYkPTGGTIMLRDQHLEGLPGQQIARMgvvRTF--QHVRLFREMTVIENL 101
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARH---RAYlsQQQTPPFAMPVFQYL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 102 LVAQHQQLKSGlfsgllktpafrrAHSEALDRAAtwlERINLLQHANRQAGNLAYGD-QR-RLeIARCMVTQPAI----- 174
Cdd:PRK03695 91 TLHQPDKTRTE-------------AVASALNEVA---EALGLDDKLGRSVNQLSGGEwQRvRL-AAVVLQVWPDInpagq 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1821658505 175 -LMLDEPAAGLNPKETKELDELIVELrNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNPDVIRAY 251
Cdd:PRK03695 154 lLLLDEPMNSLDVAQQAALDRLLSEL-CQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENLAQVF 230
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
23-243 |
5.87e-14 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 70.91 E-value: 5.87e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 23 NVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARM-----GVVrtFQHVRLFREMTV 97
Cdd:PRK10535 26 GISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLrrehfGFI--FQRYHLLSHLTA 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 98 IENLLVAqhqqlksGLFSGLLKTpafrrahsEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPAILML 177
Cdd:PRK10535 104 AQNVEVP-------AVYAGLERK--------QRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILA 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1821658505 178 DEPAAGLNPKETKELDELIVELRNHHNTTIlLIEHDmKLVMGISDRIYVVNQGTPLANGTPEQIRN 243
Cdd:PRK10535 169 DEPTGALDSHSGEEVMAILHQLRDRGHTVI-IVTHD-PQVAAQAERVIEIRDGEIVRNPPAQEKVN 232
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1-230 |
7.38e-14 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 70.50 E-value: 7.38e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRF--GGLL--AVNNVSLELREREIVSLIGPNGAGKT-TVFNCLTGFYKP----TGGTIMLR------ 65
Cdd:PRK15134 1 MTQPLLAIENLSVAFrqQQTVrtVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLLPSPpvvyPSGDIRFHgesllh 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 66 --DQHLEGLPGQQIARmgvvrtfqhvrLFREMTVIENLLVAQHQQLKS--GLFSGLLKTPAfrraHSEALDraatWLERI 141
Cdd:PRK15134 81 asEQTLRGVRGNKIAM-----------IFQEPMVSLNPLHTLEKQLYEvlSLHRGMRREAA----RGEILN----CLDRV 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 142 NLLQHANRQAG---NLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVM 218
Cdd:PRK15134 142 GIRQAAKRLTDyphQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVR 221
|
250
....*....|..
gi 1821658505 219 GISDRIYVVNQG 230
Cdd:PRK15134 222 KLADRVAVMQNG 233
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
20-237 |
9.20e-14 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 70.38 E-value: 9.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIML-----RDQHLEGLPgQQIarmGVVrtFQHVRLFRE 94
Cdd:PRK13657 350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIdgtdiRTVTRASLR-RNI---AVV--FQDAGLFNR 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 95 mTVIENLLVAqhqqlksglfsgllKTPAFRRAHSEALDRAATW--LER--INLLQHANRQAGNLAYGDQRRLEIARCMVT 170
Cdd:PRK13657 424 -SIEDNIRVG--------------RPDATDEEMRAAAERAQAHdfIERkpDGYDTVVGERGRQLSGGERQRLAIARALLK 488
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1821658505 171 QPAILMLDEPAAGLNPKETKELDELIVELRnhHNTTILLIEHDMKLVMGiSDRIYVVNQGTPLANGT 237
Cdd:PRK13657 489 DPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRLSTVRN-ADRILVFDNGRVVESGS 552
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
2-245 |
1.08e-13 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 70.12 E-value: 1.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 2 SQPLLSVSGLMMRF---GGLL--------AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYkPTGGTIMLRDQHLE 70
Cdd:PRK15134 272 ASPLLDVEQLQVAFpirKGILkrtvdhnvVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLH 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 71 GLPGQQI----ARMGVVrtFQ------HVRLFREMTVIENLLVaqHQqlksglfsgllktPAFRRAHSEAldRAATWLER 140
Cdd:PRK15134 351 NLNRRQLlpvrHRIQVV--FQdpnsslNPRLNVLQIIEEGLRV--HQ-------------PTLSAAQREQ--QVIAVMEE 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 141 INL---LQHanRQAGNLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLV 217
Cdd:PRK15134 412 VGLdpeTRH--RYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVV 489
|
250 260
....*....|....*....|....*...
gi 1821658505 218 MGISDRIYVVNQGTPLANGTPEQIRNNP 245
Cdd:PRK15134 490 RALCHQVIVLRQGEVVEQGDCERVFAAP 517
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
21-230 |
1.34e-13 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 69.85 E-value: 1.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 21 VNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPT-GGTIMLRDQHLEGLPGQQIARMGVVRTFQHVR---LFREMT 96
Cdd:TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKfEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKrhgIVPILG 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 97 VIENLLVAQHQQlksglFSGLLKTPAfrRAHSEALDRAatwLERINL-LQHANRQAGNLAYGDQRRLEIARCMVTQPAIL 175
Cdd:TIGR02633 356 VGKNITLSVLKS-----FCFKMRIDA--AAELQIIGSA---IQRLKVkTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVL 425
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1821658505 176 MLDEPAAGLNPKETKELDELIVELRnHHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:TIGR02633 426 ILDEPTRGVDVGAKYEIYKLINQLA-QEGVAIIVVSSELAEVLGLSDRVLVIGEG 479
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
4-245 |
2.36e-13 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 68.68 E-value: 2.36e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 4 PLLSVSGLMMRF----GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKP----TGGTIMLRDQHLEGLPGQ 75
Cdd:PRK15093 2 PLLDIRNLTIEFktsdGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDnwrvTADRMRFDDIDLLRLSPR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 76 QiaRMGVVRtfQHVRL-FREMTVIENLLVAQHQQLKSGLFSGLLKTPAFRRAHSEaLDRAATWLERINLLQHANRQAG-- 152
Cdd:PRK15093 82 E--RRKLVG--HNVSMiFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWR-KRRAIELLHRVGIKDHKDAMRSfp 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 153 -NLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGT 231
Cdd:PRK15093 157 yELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQ 236
|
250
....*....|....
gi 1821658505 232 PLANGTPEQIRNNP 245
Cdd:PRK15093 237 TVETAPSKELVTTP 250
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
22-240 |
2.48e-13 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 67.26 E-value: 2.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 22 NNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARM-GVVRtfQHVRLFREmTVIEN 100
Cdd:cd03253 18 KDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAiGVVP--QDTVLFND-TIGYN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 101 L----LVAQHQQLksglfsgllktpafrrahsEALDRAATWLERI-NLLQHANRQAGN----LAYGDQRRLEIARCMVTQ 171
Cdd:cd03253 95 IrygrPDATDEEV-------------------IEAAKAAQIHDKImRFPDGYDTIVGErglkLSGGEKQRVAIARAILKN 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1821658505 172 PAILMLDEPAAGLNPKETKELDELIVELRNhhNTTILLIEHDMKLVMGiSDRIYVVNQGTPLANGTPEQ 240
Cdd:cd03253 156 PPILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEE 221
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
23-198 |
3.06e-13 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 66.37 E-value: 3.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 23 NVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRdqhleglpGQQIARMGVvrTFQHVRLF--------RE 94
Cdd:PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ--------GEPIRRQRD--EYHQDLLYlghqpgikTE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 95 MTVIENLLVAQhqqlksglfsgllktpafrrAHSEALDRAATW--LERINLLQHANRQAGNLAYGDQRRLEIARCMVTQP 172
Cdd:PRK13538 89 LTALENLRFYQ--------------------RLHGPGDDEALWeaLAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRA 148
|
170 180
....*....|....*....|....*.
gi 1821658505 173 AILMLDEPAAGLNPKETKELDELIVE 198
Cdd:PRK13538 149 PLWILDEPFTAIDKQGVARLEALLAQ 174
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
23-241 |
3.40e-13 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 68.59 E-value: 3.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 23 NVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLpGQQIARMGVVRT-----------FQHVRL 91
Cdd:PRK10790 359 NINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSL-SHSVLRQGVAMVqqdpvvladtfLANVTL 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 92 FREMT---VIENLLVAQHQQLKSGLFSGLlktpafrraHSealdraatwlerinllqHANRQAGNLAYGDQRRLEIARCM 168
Cdd:PRK10790 438 GRDISeeqVWQALETVQLAELARSLPDGL---------YT-----------------PLGEQGNNLSVGQKQLLALARVL 491
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1821658505 169 VTQPAILMLDEPAAGLNPKETKELDELIVELRNHhnTTILLIEHDMKLVMGiSDRIYVVNQGTPLANGTPEQI 241
Cdd:PRK10790 492 VQTPQILILDEATANIDSGTEQAIQQALAAVREH--TTLVVIAHRLSTIVE-ADTILVLHRGQAVEQGTHQQL 561
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
2-253 |
9.54e-13 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 65.96 E-value: 9.54e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 2 SQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMg 81
Cdd:PRK10575 8 SDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 82 VVRTFQHVRLFREMTVIENLLVAQHQqlksglFSGLLKTpaFRRAHSEALDRAATWlerINLLQHANRQAGNLAYGDQRR 161
Cdd:PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYP------WHGALGR--FGAADREKVEEAISL---VGLKPLAHRLVDSLSGGERQR 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 162 LEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQI 241
Cdd:PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
250
....*....|..
gi 1821658505 242 RnNPDVIRAYLG 253
Cdd:PRK10575 236 M-RGETLEQIYG 246
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
17-253 |
1.08e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 66.16 E-value: 1.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 17 GLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVVRTFQHVRL-FREM 95
Cdd:PRK13644 14 GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETqFVGR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 96 TVIENLLVAQHQqlksglfsgLLKTPAFRRahsEALDRAatwLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPAIL 175
Cdd:PRK13644 94 TVEEDLAFGPEN---------LCLPPIEIR---KRVDRA---LAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1821658505 176 MLDEPAAGLNPKETKELDELIVELrNHHNTTILLIEHDMKlVMGISDRIYVVNQGTPLANGTPEQIRNNPDVirAYLG 253
Cdd:PRK13644 159 IFDEVTSMLDPDSGIAVLERIKKL-HEKGKTIVYITHNLE-ELHDADRIIVMDRGKIVLEGEPENVLSDVSL--QTLG 232
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
6-241 |
1.49e-12 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 66.70 E-value: 1.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGG--LLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARM-GV 82
Cdd:COG4618 331 LSVENLTVVPPGskRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDREELGRHiGY 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 83 VRtfQHVRLFrEMTVIENllVAQhqqlksglfsgllktpaFRRAHSEALDRAAtwlerinllqhanRQAG--------NL 154
Cdd:COG4618 411 LP--QDVELF-DGTIAEN--IAR-----------------FGDADPEKVVAAA-------------KLAGvhemilrlPD 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 155 AY------------GDQR-RLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLvMGIS 221
Cdd:COG4618 456 GYdtrigeggarlsGGQRqRIGLARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKA-RGATVVVITHRPSL-LAAV 533
|
250 260
....*....|....*....|
gi 1821658505 222 DRIYVVNQGTPLANGTPEQI 241
Cdd:COG4618 534 DKLLVLRDGRVQAFGPRDEV 553
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
17-254 |
1.79e-12 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 66.41 E-value: 1.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 17 GLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYkPTGGTIMLRDQHLEGLP----GQQIARMGvvrtfQHVRLF 92
Cdd:PRK11174 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDpeswRKHLSWVG-----QNPQLP 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 93 rEMTVIENLLVAQHQqlksglfsgllktpafrrAHSEALDRAatwLERINLLQHANRQAGNLAY--GDQ---------RR 161
Cdd:PRK11174 436 -HGTLRDNVLLGNPD------------------ASDEQLQQA---LENAWVSEFLPLLPQGLDTpiGDQaaglsvgqaQR 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 162 LEIARCMVTQPAILMLDEPAAGLNPK-ETKELDELiveLRNHHNTTILLIEH---DMKLVmgisDRIYVVNQGTPLANGT 237
Cdd:PRK11174 494 LALARALLQPCQLLLLDEPTASLDAHsEQLVMQAL---NAASRRQTTLMVTHqleDLAQW----DQIWVMQDGQIVQQGD 566
|
250
....*....|....*..
gi 1821658505 238 PEQIRNNPDVIRAYLGE 254
Cdd:PRK11174 567 YAELSQAGGLFATLLAH 583
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
23-254 |
2.85e-12 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 65.28 E-value: 2.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 23 NVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHL------EGLPGQQiARMGVVrtFQHVRLFREMT 96
Cdd:PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLfdaekgICLPPEK-RRIGYV--FQDARLFPHYK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 97 VIENLLVaqhqqlksglfsGLLKTpafRRAHseaLDRAATWLERINLLqhaNRQAGNLAYGDQRRLEIARCMVTQPAILM 176
Cdd:PRK11144 93 VRGNLRY------------GMAKS---MVAQ---FDKIVALLGIEPLL---DRYPGSLSGGEKQRVAIGRALLTAPELLL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1821658505 177 LDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNPdVIRAYLGE 254
Cdd:PRK11144 152 MDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS-AMRPWLPK 228
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
17-241 |
4.32e-12 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 64.04 E-value: 4.32e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 17 GLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLrDQHLEGLPGQQIARMGVVRTFQHVRLFREmT 96
Cdd:cd03252 14 GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLV-DGHDLALADPAWLRRQVGVVLQENVLFNR-S 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 97 VIENLLVAQhqqlksglfsgllktPAFRRAHSEALDRAATWLERINLL-----QHANRQAGNLAYGDQRRLEIARCMVTQ 171
Cdd:cd03252 92 IRDNIALAD---------------PGMSMERVIEAAKLAGAHDFISELpegydTIVGEQGAGLSGGQRQRIAIARALIHN 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1821658505 172 PAILMLDEPAAGLNpketKELDELIveLRNHH----NTTILLIEHDMKLVMGiSDRIYVVNQGTPLANGTPEQI 241
Cdd:cd03252 157 PRILIFDEATSALD----YESEHAI--MRNMHdicaGRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDEL 223
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
2-213 |
4.42e-12 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 63.58 E-value: 4.42e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 2 SQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIaRMG 81
Cdd:PRK10247 4 NSPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY-RQQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 82 VVRTFQHVRLFREmTVIENLLVaqhqqlksglfsgllktPAFRRAHSEALDRAATWLERINLLQHANRQAGN-LAYGDQR 160
Cdd:PRK10247 83 VSYCAQTPTLFGD-TVYDNLIF-----------------PWQIRNQQPDPAIFLDDLERFALPDTILTKNIAeLSGGEKQ 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1821658505 161 RLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHD 213
Cdd:PRK10247 145 RISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-239 |
5.85e-12 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 63.89 E-value: 5.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGF--YKPTGGTIMLRDQHLEGLPGQQIA 78
Cdd:CHL00131 3 KNKPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHpaYKILEGDILFKGESILDLEPEERA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 79 RMGVVRTFQHVRLFREMTVIENLLVAQHQQLKsglFSGL--LKTPAFRRAHSEALDRA---ATWLERinllqhaNRQAGn 153
Cdd:CHL00131 83 HLGIFLAFQYPIEIPGVSNADFLRLAYNSKRK---FQGLpeLDPLEFLEIINEKLKLVgmdPSFLSR-------NVNEG- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 154 LAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNtTILLIEHDMKLVMGIS-DRIYVVNQGTP 232
Cdd:CHL00131 152 FSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSEN-SIILITHYQRLLDYIKpDYVHVMQNGKI 230
|
....*..
gi 1821658505 233 LANGTPE 239
Cdd:CHL00131 231 IKTGDAE 237
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
21-253 |
8.92e-12 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 63.31 E-value: 8.92e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 21 VNNVSLELREREIVSLIGPNGAGKTTVFNC----LTGFYKPTG----GTIMLRDQHLEGLPGQQIARMGVVRTFQHVRLF 92
Cdd:PRK13547 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKAlagdLTGGGAPRGarvtGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 93 rEMTVIENLLVAQHqqlksglfsgllktPAFRRAHSEAL-DRAATW--LERINLLQHANRQAGNLAYGDQRRLEIARCM- 168
Cdd:PRK13547 97 -AFSAREIVLLGRY--------------PHARRAGALTHrDGEIAWqaLALAGATALVGRDVTTLSGGELARVQFARVLa 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 169 --------VTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQ 240
Cdd:PRK13547 162 qlwpphdaAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPAD 241
|
250
....*....|...
gi 1821658505 241 IRnNPDVIRAYLG 253
Cdd:PRK13547 242 VL-TPAHIARCYG 253
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
20-252 |
1.34e-11 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 62.41 E-value: 1.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRdqhleglpGQQIARMGVVRTFQHvrlfrEMTVIE 99
Cdd:COG1134 41 ALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVN--------GRVSALLELGAGFHP-----ELTGRE 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 100 NLLVaqhqqlkSGLFSGLLKtpafrrahSEALDRaatwLERI----NLLQHANRQAGNLAYGDQRRLEIARCMVTQPAIL 175
Cdd:COG1134 108 NIYL-------NGRLLGLSR--------KEIDEK----FDEIvefaELGDFIDQPVKTYSSGMRARLAFAVATAVDPDIL 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 176 MLDEP-AAG---LNPKETKELDELIvelrnHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEqirnnpDVIRAY 251
Cdd:COG1134 169 LVDEVlAVGdaaFQKKCLARIRELR-----ESGRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPE------EVIAAY 237
|
.
gi 1821658505 252 L 252
Cdd:COG1134 238 E 238
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
6-238 |
1.71e-11 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 61.66 E-value: 1.71e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLL--AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLrdqhleglPGQQIARMGVV 83
Cdd:cd03369 7 IEVENLSVRYAPDLppVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEI--------DGIDISTIPLE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 84 RtfqhvrLFREMTVIenllvAQhqqlKSGLFSGLLKTpafrrahseALDRAATWLERinLLQHANRQAG---NLAYGDQR 160
Cdd:cd03369 79 D------LRSSLTII-----PQ----DPTLFSGTIRS---------NLDPFDEYSDE--EIYGALRVSEgglNLSQGQRQ 132
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1821658505 161 RLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhhNTTILLIEHDMKLVMGIsDRIYVVNQGTPLANGTP 238
Cdd:cd03369 133 LLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFT--NSTILTIAHRLRTIIDY-DKILVMDAGEVKEYDHP 207
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
16-245 |
5.48e-11 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 61.78 E-value: 5.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 16 GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQ---HLEglPgqqiARMGVVRTFQHVRLF 92
Cdd:PRK11650 15 GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRvvnELE--P----ADRDIAMVFQNYALY 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 93 REMTVIENLLVAqhqqlksglfsglLKTPAFRRAHSEA-LDRAATWLERINLLQHANRQagnLAYGDQRRLEIARCMVTQ 171
Cdd:PRK11650 89 PHMSVRENMAYG-------------LKIRGMPKAEIEErVAEAARILELEPLLDRKPRE---LSGGQRQRVAMGRAIVRE 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 172 PAILMLDEPAAGLNPKetkeldeLIV----ELRNHH---NTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNN 244
Cdd:PRK11650 153 PAVFLFDEPLSNLDAK-------LRVqmrlEIQRLHrrlKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225
|
.
gi 1821658505 245 P 245
Cdd:PRK11650 226 P 226
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
148-252 |
7.10e-11 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 62.15 E-value: 7.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 148 NRQAGNLAYGDQRRLEIARCMVTQPAILM--LDEPAAGLNPKETKELDELIVELRNHHNtTILLIEHDMKLVmGISDRIY 225
Cdd:PRK00635 471 ERALATLSGGEQERTALAKHLGAELIGITyiLDEPSIGLHPQDTHKLINVIKKLRDQGN-TVLLVEHDEQMI-SLADRII 548
|
90 100 110
....*....|....*....|....*....|....
gi 1821658505 226 VVNQGTP------LANGTPEQIRNNPDVIRA-YL 252
Cdd:PRK00635 549 DIGPGAGifggevLFNGSPREFLAKSDSLTAkYL 582
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
32-236 |
7.86e-11 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 61.82 E-value: 7.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 32 EIVSLIGPNGAGKTTVFNCLTGFYKPTG--GTIMLRDQHLEglpGQQIARMGVVRtfQHVRLFREMTVIENLlvaqhqql 109
Cdd:PLN03211 95 EILAVLGPSGSGKSTLLNALAGRIQGNNftGTILANNRKPT---KQILKRTGFVT--QDDILYPHLTVRETL-------- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 110 ksgLFSGLLKTPAfRRAHSEALDRAATWLERINLLQHANRQAGN-----LAYGDQRRLEIARCMVTQPAILMLDEPAAGL 184
Cdd:PLN03211 162 ---VFCSLLRLPK-SLTKQEKILVAESVISELGLTKCENTIIGNsfirgISGGERKRVSIAHEMLINPSLLILDEPTSGL 237
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1821658505 185 NPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANG 236
Cdd:PLN03211 238 DATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFG 289
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
21-230 |
2.07e-10 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 60.18 E-value: 2.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 21 VNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVVRTFQHVR---LFREMTV 97
Cdd:PRK09700 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRdngFFPNFSI 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 98 IENLLVAqhQQLKSGLFSGLLKTpafrRAHSEALDRAATWLERINLLQHA-NRQAGNLAYGDQRRLEIARCMVTQPAILM 176
Cdd:PRK09700 359 AQNMAIS--RSLKDGGYKGAMGL----FHEVDEQRTAENQRELLALKCHSvNQNITELSGGNQQKVLISKWLCCCPEVII 432
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1821658505 177 LDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:PRK09700 433 FDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILMVSSELPEIITVCDRIAVFCEG 485
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
20-245 |
2.41e-10 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 59.59 E-value: 2.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIA--RMGVVRTFQ------HVRL 91
Cdd:PRK11308 30 ALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKllRQKIQIVFQnpygslNPRK 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 92 FREMTVIENLLVaqHQQLksglfsgllkTPAFRRAhsealdRAATWLERINLL-QHANRQAGNLAYGDQRRLEIARCMVT 170
Cdd:PRK11308 110 KVGQILEEPLLI--NTSL----------SAAERRE------KALAMMAKVGLRpEHYDRYPHMFSGGQRQRIAIARALML 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1821658505 171 QPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNP 245
Cdd:PRK11308 172 DPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNP 246
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
22-233 |
2.59e-10 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 58.43 E-value: 2.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 22 NNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTIMLRDQHLEglpgqqiarmgvvrtfqhvrlfREMTVIE 99
Cdd:COG2401 47 RDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKgtPVAGCVDVPDNQFG----------------------REASLID 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 100 NLlvaqhqqlksglfsGLLKTP--AFRRAHSEALDRAATWLerinllqhanRQAGNLAYGDQRRLEIARCMVTQPAILML 177
Cdd:COG2401 105 AI--------------GRKGDFkdAVELLNAVGLSDAVLWL----------RRFKELSTGQKFRFRLALLLAERPKLLVI 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1821658505 178 DEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGIS-DRIYVVNQGTPL 233
Cdd:COG2401 161 DEFCSHLDRQTAKRVARNLQKLARRAGITLVVATHHYDVIDDLQpDLLIFVGYGGVP 217
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
20-230 |
3.17e-10 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 58.31 E-value: 3.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRdqhleglpGQQIARMGVVRTFQhvrlfREMTVIE 99
Cdd:cd03220 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVR--------GRVSSLLGLGGGFN-----PELTGRE 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 100 NLLVaqhqqlkSGLFSGLlkTPAFRRAHSEALdraatwLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPAILMLDE 179
Cdd:cd03220 104 NIYL-------NGRLLGL--SRKEIDEKIDEI------IEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDE 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1821658505 180 PAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:cd03220 169 VLAVGDAAFQEKCQRRLRELLK-QGKTVILVSHDPSSIKRLCDRALVLEKG 218
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
3-212 |
4.61e-10 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 59.26 E-value: 4.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 3 QPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFY--------------KPTGGTIMLRDQH 68
Cdd:PRK10938 258 EPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHpqgysndltlfgrrRGSGETIWDIKKH 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 69 LeglpgqqiarmGVVRTFQHVRlFREMTVIENLLVaqhqqlkSGLFSGLlktpAFRRAHSEALDR-AATWLERINLlqhA 147
Cdd:PRK10938 338 I-----------GYVSSSLHLD-YRVSTSVRNVIL-------SGFFDSI----GIYQAVSDRQQKlAQQWLDILGI---D 391
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1821658505 148 NRQAG----NLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEH 212
Cdd:PRK10938 392 KRTADapfhSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSH 460
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
24-230 |
9.39e-10 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 58.38 E-value: 9.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 24 VSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLE-GLPGQQIaRMGVV-----RTFQHVRLFRemTV 97
Cdd:PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDiRSPRDAI-RAGIMlcpedRKAEGIIPVH--SV 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 98 IENL-LVAQHQQLKSGLFsgllktpafRRAHSEAlDRAATWLERINLLQHANRQA-GNLAYGDQRRLEIARCMVTQPAIL 175
Cdd:PRK11288 349 ADNInISARRHHLRAGCL---------INNRWEA-ENADRFIRSLNIKTPSREQLiMNLSGGNQQKAILGRWLSEDMKVI 418
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1821658505 176 MLDEPAAGLNPKETKELDELIVELRNHhNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:PRK11288 419 LLDEPTRGIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMREG 472
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
1-237 |
2.64e-09 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 57.10 E-value: 2.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSQPLLSVSGLMMRFGGL-LAVNnvSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTImlrdqhLEGL-----Pg 74
Cdd:COG1245 337 EEETLVEYPDLTKSYGGFsLEVE--GGEIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEV------DEDLkisykP- 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 75 qqiarmgvvrtfQHVRLFREMTVIENLlvaqHQQLKSGLFSGLLKTPAFRRahseaLDraatwLERInllqhANRQAGNL 154
Cdd:COG1245 408 ------------QYISPDYDGTVEEFL----RSANTDDFGSSYYKTEIIKP-----LG-----LEKL-----LDKNVKDL 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 155 AYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNqGTPLA 234
Cdd:COG1245 457 SGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRFAENRGKTAMVVDHDIYLIDYISDRLMVFE-GEPGV 535
|
...
gi 1821658505 235 NGT 237
Cdd:COG1245 536 HGH 538
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
20-213 |
4.96e-09 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 56.13 E-value: 4.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGlPGQQIARMGVVRTFQHVRLFremtviE 99
Cdd:PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTA-EQPEDYRKLFSAVFTDFHLF------D 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 100 NLLVAQHQQLKSGLfsgllktpafrrahsealdrAATWLERINL---LQHANRQAGN--LAYGDQRRLEIARCMVTQPAI 174
Cdd:PRK10522 411 QLLGPEGKPANPAL--------------------VEKWLERLKMahkLELEDGRISNlkLSKGQKKRLALLLALAEERDI 470
|
170 180 190
....*....|....*....|....*....|....*....
gi 1821658505 175 LMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHD 213
Cdd:PRK10522 471 LLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHD 509
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
6-62 |
9.29e-09 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 55.33 E-value: 9.29e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI 62
Cdd:TIGR03719 323 IEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
|
|
| BCA_ABC_TP_C |
pfam12399 |
Branched-chain amino acid ATP-binding cassette transporter; This domain family is found in ... |
233-255 |
1.20e-08 |
|
Branched-chain amino acid ATP-binding cassette transporter; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 30 amino acids in length. The family is found in association with pfam00005. There is a conserved AYLG sequence motif. This family is the C terminal of an ATP dependent branched-chain amino acid transporter. This domain is essential for LPS transport, through critical interactions with Walker A and switch helix domains.
Pssm-ID: 463560 Cd Length: 25 Bit Score: 49.56 E-value: 1.20e-08
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
5-236 |
1.30e-08 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 54.03 E-value: 1.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 5 LLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGF--YKPTGGTIMLRDQHLEGLPGQQIARMGV 82
Cdd:PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRedYEVTGGTVEFKGKDLLELSPEDRAGEGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 83 VRTFQHVrlfREMTVIENLLVAQhqqlksglfSGLLKTPAFRraHSEALDR---AATWLERINLLQHAN---RQAGNLAY 156
Cdd:PRK09580 81 FMAFQYP---VEIPGVSNQFFLQ---------TALNAVRSYR--GQEPLDRfdfQDLMEEKIALLKMPEdllTRSVNVGF 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 157 --GDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLA 234
Cdd:PRK09580 147 sgGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 226
|
..
gi 1821658505 235 NG 236
Cdd:PRK09580 227 SG 228
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
27-237 |
2.00e-08 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 54.43 E-value: 2.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 27 ELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLrDQHLEGLPgqqiarmgvvrtfQHVRLFREMTVIENLlvaqh 106
Cdd:PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDP-ELKISYKP-------------QYIKPDYDGTVEDLL----- 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 107 qqlksglfsgllktpafrRAHSEALDRAATWLERINLLQHAN---RQAGNLAYGDQRRLEIARCMVTQPAILMLDEPAAG 183
Cdd:PRK13409 422 ------------------RSITDDLGSSYYKSEIIKPLQLERlldKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAH 483
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1821658505 184 LNPKE----TKELDELIVElrnhHNTTILLIEHDMKLVMGISDRIyVVNQGTPLANGT 237
Cdd:PRK13409 484 LDVEQrlavAKAIRRIAEE----REATALVVDHDIYMIDYISDRL-MVFEGEPGKHGH 536
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
8-62 |
2.12e-08 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 54.35 E-value: 2.12e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1821658505 8 VSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI 62
Cdd:PRK11819 327 AENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
148-253 |
4.49e-08 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 53.48 E-value: 4.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 148 NRQAGNLAYGDQRRLEIArcmvTQ------PAILMLDEPAAGLNPKETKELDELIVELRNHHNtTILLIEHDmKLVMGIS 221
Cdd:TIGR00630 483 SRAAGTLSGGEAQRIRLA----TQigsgltGVLYVLDEPSIGLHQRDNRRLINTLKRLRDLGN-TLIVVEHD-EDTIRAA 556
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1821658505 222 DriYVVNQGtP---------LANGTPEQIRNNPDVIR-AYLG 253
Cdd:TIGR00630 557 D--YVIDIG-PgagehggevVASGTPEEILANPDSLTgQYLS 595
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
27-243 |
5.11e-08 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 51.42 E-value: 5.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 27 ELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRdqhleglpgqqiarmgvvrtfqhvrlfremtvienllvaqh 106
Cdd:cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWD----------------------------------------- 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 107 qqlksglfsglLKTPAFRRahsealdraatwlerinllqhanrQAGNLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNP 186
Cdd:cd03222 60 -----------GITPVYKP------------------------QYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDI 104
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 187 KETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVnQGTPLANGT---PEQIRN 243
Cdd:cd03222 105 EQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVF-EGEPGVYGIasqPKGTRE 163
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
153-237 |
5.35e-08 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 53.49 E-value: 5.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 153 NLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGiSDRIYVVNQgtP 232
Cdd:PTZ00265 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKR-SDKIVVFNN--P 1434
|
....*
gi 1821658505 233 LANGT 237
Cdd:PTZ00265 1435 DRTGS 1439
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
29-243 |
5.67e-08 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 52.37 E-value: 5.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 29 REREIVSLIGPNGAGKTTVFNCLTGFYKPTGG---------TIM-------LRDqHLEGLPGQQIArmgVVRTFQHVRLF 92
Cdd:cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGkfddppdwdEILdefrgseLQN-YFTKLLEGDVK---VIVKPQYVDLI 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 93 RemtvienllvaqhQQLKsGLFSGLLKtpafRRAHSEALDRAATWLERINLLqhaNRQAGNLAYGDQRRLEIARCMVTQP 172
Cdd:cd03236 100 P-------------KAVK-GKVGELLK----KKDERGKLDELVDQLELRHVL---DRNIDQLSGGELQRVAIAAALARDA 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1821658505 173 AILMLDEPAAGLNPKETKELDELIVELRNHHNtTILLIEHDMKLVMGISDRIYVVnQGTPLANGT---PEQIRN 243
Cdd:cd03236 159 DFYFFDEPSSYLDIKQRLNAARLIRELAEDDN-YVLVVEHDLAVLDYLSDYIHCL-YGEPGAYGVvtlPKSVRE 230
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
5-216 |
1.06e-07 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 50.72 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 5 LLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHleglpgqqiarmgvvr 84
Cdd:PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQS---------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 85 tfqhvrlfremtvIENLLVAQHQQL-----KSGLFSGL-LKTPAFRRAHSEALDRAATWLERINLLQH-ANRQAGNLAYG 157
Cdd:PRK13540 65 -------------IKKDLCTYQKQLcfvghRSGINPYLtLRENCLYDIHFSPGAVGITELCRLFSLEHlIDYPCGLLSSG 131
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1821658505 158 DQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKL 216
Cdd:PRK13540 132 QKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPL 190
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
6-224 |
2.00e-07 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 51.43 E-value: 2.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 6 LSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQqiarmgvvrt 85
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQ---------- 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 86 fQHVRLFRE-MTVIEnlLVAQHQQLKsglfsgllktpafrraHSEALDRAAtwLERinLL---QHANRQAGNLAYGDQRR 161
Cdd:PRK15064 390 -DHAYDFENdLTLFD--WMSQWRQEG----------------DDEQAVRGT--LGR--LLfsqDDIKKSVKVLSGGEKGR 446
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1821658505 162 LEIARCMVTQPAILMLDEPaaglnpkeTKELD-ELIVELRN---HHNTTILLIEHDMKLVMGISDRI 224
Cdd:PRK15064 447 MLFGKLMMQKPNVLVMDEP--------TNHMDmESIESLNMaleKYEGTLIFVSHDREFVSSLATRI 505
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
139-224 |
2.63e-07 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 49.95 E-value: 2.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 139 ERINLLQHA-------NRQAGNLAYGDQRRLEIArcmvTQ------PAILMLDEPAAGLNPKETKELDELIVELRNHHNt 205
Cdd:cd03270 116 ERLGFLVDVglgyltlSRSAPTLSGGEAQRIRLA----TQigsgltGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGN- 190
|
90
....*....|....*....
gi 1821658505 206 TILLIEHDMKlVMGISDRI 224
Cdd:cd03270 191 TVLVVEHDED-TIRAADHV 208
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
21-212 |
5.15e-07 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 50.19 E-value: 5.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 21 VNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTImlrdqhleGLPgqQIARMgvvrtfqhvrlfremtvien 100
Cdd:COG4178 379 LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRI--------ARP--AGARV-------------------- 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 101 LLVAQhqqlKSGLFSGLLKT----PAFRRAHSEAldRAATWLERINLLQHANR--QAGN----LAYGDQRRLEIARCMVT 170
Cdd:COG4178 429 LFLPQ----RPYLPLGTLREallyPATAEAFSDA--ELREALEAVGLGHLAERldEEADwdqvLSLGEQQRLAFARLLLH 502
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1821658505 171 QPAILMLDEPAAGLNPKETKELDELIVElrNHHNTTILLIEH 212
Cdd:COG4178 503 KPDWLFLDEATSALDEENEAALYQLLRE--ELPGTTVISVGH 542
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
23-212 |
5.25e-07 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 48.71 E-value: 5.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 23 NVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGvvrtfQHVRLFREMTVIENLl 102
Cdd:PRK13541 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIG-----HNLGLKLEMTVFENL- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 103 vaqhqQLKSGLFSGllktpafrrahSEALDRAATWLERINLLqhaNRQAGNLAYGDQRRLEIARCMVTQPAILMLDEPAA 182
Cdd:PRK13541 92 -----KFWSEIYNS-----------AETLYAAIHYFKLHDLL---DEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVET 152
|
170 180 190
....*....|....*....|....*....|
gi 1821658505 183 GLNPKETKELDELIVeLRNHHNTTILLIEH 212
Cdd:PRK13541 153 NLSKENRDLLNNLIV-MKANSGGIVLLSSH 181
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
154-245 |
5.54e-07 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 49.74 E-value: 5.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 154 LAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPL 233
Cdd:PRK11022 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVV 233
|
90
....*....|..
gi 1821658505 234 ANGTPEQIRNNP 245
Cdd:PRK11022 234 ETGKAHDIFRAP 245
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
7-200 |
1.13e-06 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 49.35 E-value: 1.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 7 SVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIM-----LRD-QHLEGLpGQQIARM 80
Cdd:NF033858 3 RLEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEvlggdMADaRHRRAV-CPRIAYM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 81 --GVVRTfqhvrLFREMTVIENLlvaqhqQLKSGLFsGLlkTPAFRRAhsealdRAATWLERINLLQHANRQAGNLAYGD 158
Cdd:NF033858 82 pqGLGKN-----LYPTLSVFENL------DFFGRLF-GQ--DAAERRR------RIDELLRATGLAPFADRPAGKLSGGM 141
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1821658505 159 QRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELR 200
Cdd:NF033858 142 KQKLGLCCALIHDPDLLILDEPTTGVDPLSRRQFWELIDRIR 183
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
20-62 |
1.22e-06 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 49.12 E-value: 1.22e-06
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI 62
Cdd:PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV 81
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
32-244 |
1.29e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 49.20 E-value: 1.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 32 EIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQhleglpgqQIARMGVVRtfqhvrLFREMTVIENLLVaqhqqlks 111
Cdd:PLN03232 1263 EKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDC--------DVAKFGLTD------LRRVLSIIPQSPV-------- 1320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 112 gLFSGLLKT--------------PAFRRAH-SEALDRAATWLErinllQHANRQAGNLAYGDQRRLEIARCMVTQPAILM 176
Cdd:PLN03232 1321 -LFSGTVRFnidpfsehndadlwEALERAHiKDVIDRNPFGLD-----AEVSEGGENFSVGQRQLLSLARALLRRSKILV 1394
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1821658505 177 LDEPAAGLNPKETKELDELIVElrNHHNTTILLIEHDMKLVMGiSDRIYVVNQGTPLANGTPEQIRNN 244
Cdd:PLN03232 1395 LDEATASVDVRTDSLIQRTIRE--EFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSR 1459
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
150-241 |
1.65e-06 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 48.63 E-value: 1.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 150 QAGNLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHhNTTILLIEHDMKLVMGISDRIYVVNQ 229
Cdd:NF040905 401 KVGNLSGGNQQKVVLSKWLFTDPDVLILDEPTRGIDVGAKYEIYTIINELAAE-GKGVIVISSELPELLGMCDRIYVMNE 479
|
90
....*....|....*..
gi 1821658505 230 GT-----PLANGTPEQI 241
Cdd:NF040905 480 GRitgelPREEASQERI 496
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
33-187 |
1.75e-06 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 48.69 E-value: 1.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 33 IVSLIGPNGAGKTTVFNCLTGfyKPTGGTIMlRDQHLEGLPGQQiarmgvvRTFQHVRLFREMTVIENLLVAQHQQLksg 112
Cdd:PLN03140 908 LTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQ-------ETFARISGYCEQNDIHSPQVTVRESL--- 974
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 113 LFSGLLKTPAfRRAHSEAL---DRAATWLERINLLQHANRQAG--NLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPK 187
Cdd:PLN03140 975 IYSAFLRLPK-EVSKEEKMmfvDEVMELVELDNLKDAIVGLPGvtGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1053
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
148-224 |
1.98e-06 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 46.93 E-value: 1.98e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1821658505 148 NRQAGNLAYGDQRRLEIARCMV--TQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTIlLIEHDMKlVMGISDRI 224
Cdd:cd03238 82 GQKLSTLSGGELQRVKLASELFsePPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVI-LIEHNLD-VLSSADWI 158
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
22-230 |
2.05e-06 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 48.57 E-value: 2.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 22 NNVSLELREREIVSLIGPNGAGKTTVFNCLTGfyKPTGGTIMLRDQHLEGLPGQQI--ARMGVVRTfQHVRLfREMTVIE 99
Cdd:TIGR00956 780 NNVDGWVKPGTLTALMGASGAGKTTLLNVLAE--RVTTGVITGGDRLVNGRPLDSSfqRSIGYVQQ-QDLHL-PTSTVRE 855
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 100 NLlvaqhqqlksgLFSGLLKTPAfRRAHSEALDRAATWLERINLLQHANRQAGNLAYG---DQR-RLEIARCMVTQPA-I 174
Cdd:TIGR00956 856 SL-----------RFSAYLRQPK-SVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGlnvEQRkRLTIGVELVAKPKlL 923
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1821658505 175 LMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:TIGR00956 924 LFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKG 979
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
16-230 |
2.35e-06 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 48.32 E-value: 2.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 16 GGLLAVN-NVSLELREReiVSLIGPNGAGKTTVFNCLTGFYKPTGGTI---------MLRDQHLEGLPGQQIARMGVVRT 85
Cdd:PLN03073 521 GPLLFKNlNFGIDLDSR--IAMVGPNGIGKSTILKLISGELQPSSGTVfrsakvrmaVFSQHHVDGLDLSSNPLLYMMRC 598
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 86 FQHVrlfremtvienllvaQHQQLKSGLFSgllktpaFRRAHSEALDRAATwlerinllqhanrqagnLAYGDQRRLEIA 165
Cdd:PLN03073 599 FPGV---------------PEQKLRAHLGS-------FGVTGNLALQPMYT-----------------LSGGQKSRVAFA 639
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1821658505 166 RCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhhntTILLIEHDMKLVMGISDRIYVVNQG 230
Cdd:PLN03073 640 KITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQG----GVLMVSHDEHLISGSVDELWVVSEG 700
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
20-67 |
3.10e-06 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 47.87 E-value: 3.10e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQ 67
Cdd:COG4615 347 TLGPIDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQ 394
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
28-236 |
5.29e-06 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 47.11 E-value: 5.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 28 LREREIVSLIGPNGAGKTTVFNCLTGFYKPT-----------------GGTIMLrdQHLEGLPGQQIArmgVVRTFQHVR 90
Cdd:PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNlgdyeeepswdevlkrfRGTELQ--NYFKKLYNGEIK---VVHKPQYVD 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 91 LFREM---TVIEnllvaqhqqlksglfsgLLKTPAFRRAHSEALDRaatwLERINLLqhaNRQAGNLAYGDQRRLEIARC 167
Cdd:PRK13409 171 LIPKVfkgKVRE-----------------LLKKVDERGKLDEVVER----LGLENIL---DRDISELSGGELQRVAIAAA 226
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1821658505 168 MVTQPAILMLDEPAAGLNPKETKELDELIVELRNhhNTTILLIEHDMKLVMGISDRIYVVnQGTPLANG 236
Cdd:PRK13409 227 LLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDLAVLDYLADNVHIA-YGEPGAYG 292
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
22-184 |
5.37e-06 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 45.70 E-value: 5.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 22 NNVSLELREREIVSLIGPNGAGKTTVFNCLTGfyKPTGGTIMlRDQHLEGLP-GQQIAR-MGVVRtfQHVRLFREMTVIE 99
Cdd:cd03232 24 NNISGYVKPGTLTALMGESGAGKTTLLDVLAG--RKTAGVIT-GEILINGRPlDKNFQRsTGYVE--QQDVHSPNLTVRE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 100 NLlvaqhqqlksgLFSGLLKtpafrrahsealdraatwlerinllqhanrqagNLAYGDQRRLEIARCMVTQPAILMLDE 179
Cdd:cd03232 99 AL-----------RFSALLR---------------------------------GLSVEQRKRLTIGVELAAKPSILFLDE 134
|
....*
gi 1821658505 180 PAAGL 184
Cdd:cd03232 135 PTSGL 139
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
177-246 |
9.97e-06 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 46.17 E-value: 9.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 177 LDEPAAGLNPKETKELDELIVELRNHHNtTILLIEHDmKLVMGISDRI------------YVVnqgtplANGTPEQIRNN 244
Cdd:COG0178 511 LDEPSIGLHQRDNDRLIETLKRLRDLGN-TVIVVEHD-EDTIRAADYIidigpgagehggEVV------AQGTPEEILKN 582
|
..
gi 1821658505 245 PD 246
Cdd:COG0178 583 PD 584
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
23-217 |
1.42e-05 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 46.18 E-value: 1.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 23 NVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHleGLPGQQI----ARMGVVRtfQHVRLF------ 92
Cdd:PTZ00265 403 DLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSH--NLKDINLkwwrSKIGVVS--QDPLLFsnsikn 478
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 93 ---------REMTVIENLLVAQHQQLKSGL-------------FSGLLKTPA------FRRAH-----SEALDRAATWL- 138
Cdd:PTZ00265 479 nikyslyslKDLEALSNYYNEDGNDSQENKnkrnscrakcagdLNDMSNTTDsnelieMRKNYqtikdSEVVDVSKKVLi 558
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 139 --------ERINLLQHANrqAGNLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLI 210
Cdd:PTZ00265 559 hdfvsalpDKYETLVGSN--ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIII 636
|
....*..
gi 1821658505 211 EHDMKLV 217
Cdd:PTZ00265 637 AHRLSTI 643
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
28-227 |
2.40e-05 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 45.16 E-value: 2.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 28 LREREIVSLIGPNGAGKTTVFNCLTGFYKPT-G----------------GTIMLrdQHLEGLPGQQIArmgVVRTFQHVR 90
Cdd:COG1245 96 PKKGKVTGILGPNGIGKSTALKILSGELKPNlGdydeepswdevlkrfrGTELQ--DYFKKLANGEIK---VAHKPQYVD 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 91 LFREM---TVIEnllvaqhqqlksglfsgLLKTPAFRrahsEALDRAAtwlERINLLQHANRQAGNLAYGDQRRLEIARC 167
Cdd:COG1245 171 LIPKVfkgTVRE-----------------LLEKVDER----GKLDELA---EKLGLENILDRDISELSGGELQRVAIAAA 226
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 168 MVTQPAILMLDEPAAGLNPKETKELDELIVELRNhHNTTILLIEHDMKLVMGISDRIYVV 227
Cdd:COG1245 227 LLRDADFYFFDEPSSYLDIYQRLNVARLIRELAE-EGKYVLVVEHDLAILDYLADYVHIL 285
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
5-213 |
3.61e-05 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 44.50 E-value: 3.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 5 LLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRdqhleglPGQqiaRMGVVR 84
Cdd:PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLD-------PNE---RLGKLR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 85 TFQHVrlFREMTVIENLLVAqHQQL------KSGLFSGLLKTPA--FRRAHSEA----LD------RAATWL--ERINLL 144
Cdd:PRK15064 71 QDQFA--FEEFTVLDTVIMG-HTELwevkqeRDRIYALPEMSEEdgMKVADLEVkfaeMDgytaeaRAGELLlgVGIPEE 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1821658505 145 QHaNRQAGNLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIvelrNHHNTTILLIEHD 213
Cdd:PRK15064 148 QH-YGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVL----NERNSTMIIISHD 211
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
24-244 |
7.40e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 43.96 E-value: 7.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 24 VSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLrdqhleglPGQQIARMGVVRtfqhvrLFREMTVIENLLV 103
Cdd:PLN03130 1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILI--------DGCDISKFGLMD------LRKVLGIIPQAPV 1323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 104 aqhqqlksgLFSGLLKtpaFR----RAHSEAldraATW--LERINLLQHANR----------QAG-NLAYGDQRRLEIAR 166
Cdd:PLN03130 1324 ---------LFSGTVR---FNldpfNEHNDA----DLWesLERAHLKDVIRRnslgldaevsEAGeNFSVGQRQLLSLAR 1387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 167 CMVTQPAILMLDEPAAGLNPKEtkelDELIVE-LRNHHNT-TILLIEHDMKLVMGiSDRIYVVNQGTPLANGTPEQIRNN 244
Cdd:PLN03130 1388 ALLRRSKILVLDEATAAVDVRT----DALIQKtIREEFKScTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSN 1462
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
149-241 |
1.08e-04 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 43.08 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 149 RQAGNLAYGDQRRLEIARCM---VTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNtTILLIEHDMKlVMGISDriY 225
Cdd:TIGR00630 825 QPATTLSGGEAQRIKLAKELskrSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGN-TVVVIEHNLD-VIKTAD--Y 900
|
90 100
....*....|....*....|....
gi 1821658505 226 VV--------NQGTPLANGTPEQI 241
Cdd:TIGR00630 901 IIdlgpeggdGGGTVVASGTPEEV 924
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
4-230 |
1.18e-04 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 42.85 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 4 PLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRD--------QH-LEGL-- 72
Cdd:PRK10636 311 PLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKgiklgyfaQHqLEFLra 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 73 ---PGQQIARMGVVRTFQHVR------LFREMTVIENllvaqhqqlkSGLFSGllktpafrrahsealdraatwlerinl 143
Cdd:PRK10636 391 desPLQHLARLAPQELEQKLRdylggfGFQGDKVTEE----------TRRFSG--------------------------- 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 144 lqhanrqagnlayGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNhhntTILLIEHDMKLVMGISDR 223
Cdd:PRK10636 434 -------------GEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEG----ALVVVSHDRHLLRSTTDD 496
|
....*..
gi 1821658505 224 IYVVNQG 230
Cdd:PRK10636 497 LYLVHDG 503
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
19-241 |
1.44e-04 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 43.01 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 19 LAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLrdqhleglPGQQIARMGVvrtfqHvRLFREMTVI 98
Cdd:TIGR00957 1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIII--------DGLNIAKIGL-----H-DLRFKITII 1365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 99 ENLLVaqhqqlksgLFSGLLKT--PAFRRAHSEALdraatW--LERINL----------LQHANRQAG-NLAYGDQRRLE 163
Cdd:TIGR00957 1366 PQDPV---------LFSGSLRMnlDPFSQYSDEEV-----WwaLELAHLktfvsalpdkLDHECAEGGeNLSVGQRQLVC 1431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 164 IARCMVTQPAILMLDEPAAGLNpketKELDELI-VELRNHHNT-TILLIEHDMKLVMGISdRIYVVNQGTPLANGTPEQI 241
Cdd:TIGR00957 1432 LARALLRKTKILVLDEATAAVD----LETDNLIqSTIRTQFEDcTVLTIAHRLNTIMDYT-RVIVLDKGEVAEFGAPSNL 1506
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
21-217 |
1.66e-04 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 42.63 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 21 VNNVSLELREREIVS-------------LIGPNGAGKTTVFNCLTGFYKPTGGTIMLR--------DQHLEGL-Pgqqia 78
Cdd:PRK11147 322 MENVNYQIDGKQLVKdfsaqvqrgdkiaLIGPNGCGKTTLLKLMLGQLQADSGRIHCGtklevayfDQHRAELdP----- 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 79 rmgvvrtfqhvrlfrEMTVIENLlvAQHQQ--------------LKSGLFSgllktPafRRAHSEAldRAatwlerinll 144
Cdd:PRK11147 397 ---------------EKTVMDNL--AEGKQevmvngrprhvlgyLQDFLFH-----P--KRAMTPV--KA---------- 440
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1821658505 145 qhanrqagnLAYGDQRRLEIARCMVTQPAILMLDEPaaglnpkeTKELD----ELIVELRNHHNTTILLIEHDMKLV 217
Cdd:PRK11147 441 ---------LSGGERNRLLLARLFLKPSNLLILDEP--------TNDLDvetlELLEELLDSYQGTVLLVSHDRQFV 500
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
144-241 |
1.78e-04 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 42.51 E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 144 LQHA--NRQAGNLAYGDQRRLEIARCM---VTQPAILMLDEPAAGLNPKETKELDELIVELrNHHNTTILLIEHDMKLVM 218
Cdd:PRK00635 798 LDYLplGRPLSSLSGGEIQRLKLAYELlapSKKPTLYVLDEPTTGLHTHDIKALIYVLQSL-THQGHTVVIIEHNMHVVK 876
|
90 100 110
....*....|....*....|....*....|.
gi 1821658505 219 gISDriYVVNQGTP--------LANGTPEQI 241
Cdd:PRK00635 877 -VAD--YVLELGPEggnlggylLASCSPEEL 904
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
30-149 |
1.81e-04 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 41.53 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 30 EREIVSLIGPNGAGKTTVFNCLT-GFYKPTGGTIMLRDQHLEglpgQQIARMGVVRTFQH----VRLFREMTVIENLLVA 104
Cdd:COG0419 22 DDGLNLIVGPNGAGKSTILEAIRyALYGKARSRSKLRSDLIN----VGSEEASVELEFEHggkrYRIERRQGEFAEFLEA 97
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1821658505 105 QHQQLKSgLFSGLLKTPAFRRAHSEALDRAATWLERINLLQHANR 149
Cdd:COG0419 98 KPSERKE-ALKRLLGLEIYEELKERLKELEEALESALEELAELQK 141
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
20-62 |
3.79e-04 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 40.95 E-value: 3.79e-04
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI 62
Cdd:PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV 81
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
1-224 |
3.94e-04 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 41.47 E-value: 3.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 1 MSqpLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLtgfykptGGTIMLRDQHLeglpgqQIARM 80
Cdd:PRK11147 1 MS--LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKIL-------NGEVLLDDGRI------IYEQD 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 81 GVVRTFQ-----HVrlfrEMTV---IENLLVAQHQQLKS-GLFSGLLKTPAFRRAHS------EALDRAATW-LE-RIN- 142
Cdd:PRK11147 66 LIVARLQqdpprNV----EGTVydfVAEGIEEQAEYLKRyHDISHLVETDPSEKNLNelaklqEQLDHHNLWqLEnRINe 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 143 ----LLQHANRQAGNLAYGDQRRLEIARCMVTQPAILMLDEPaaglnpkeTKELD-ELIVELRN---HHNTTILLIEHDM 214
Cdd:PRK11147 142 vlaqLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEP--------TNHLDiETIEWLEGflkTFQGSIIFISHDR 213
|
250
....*....|
gi 1821658505 215 KLVMGISDRI 224
Cdd:PRK11147 214 SFIRNMATRI 223
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
21-208 |
4.66e-04 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 40.76 E-value: 4.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 21 VNNVSLELREReIVSLIGPNGAGKTTVFNCLTGFYKPTGG-TIMLRDQHLEGLPGQQIARMGVvrTFQHV--RLFREMTV 97
Cdd:COG3593 14 IKDLSIELSDD-LTVLVGENNSGKSSILEALRLLLGPSSSrKFDEEDFYLGDDPDLPEIEIEL--TFGSLlsRLLRLLLK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 98 IENL--LVAQHQQLKSGL------FSGLLKTPAFRRAHSEALDRAATWLERINLLQHAN--------RQAGNLAYGDQRR 161
Cdd:COG3593 91 EEDKeeLEEALEELNEELkealkaLNELLSEYLKELLDGLDLELELSLDELEDLLKSLSlriedgkeLPLDRLGSGFQRL 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1821658505 162 LEIA-------RCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTIL 208
Cdd:COG3593 171 ILLAllsalaeLKRAPANPILLIEEPEAHLHPQAQRRLLKLLKELSEKPNQVII 224
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
36-213 |
1.55e-03 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 39.53 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 36 LIGPNGAGKTTVFNCLTGFYKPTGGTIMLRdqhleglPGQQIARMGvvrtfQHVRLFREMTVIENLL--VAQHQQLKSGL 113
Cdd:TIGR03719 36 VLGLNGAGKSTLLRIMAGVDKDFNGEARPQ-------PGIKVGYLP-----QEPQLDPTKTVRENVEegVAEIKDALDRF 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 114 -------------FSGLLKTPAfrrAHSEALDRAATW-LER-INLLQHANR------QAGNLAYGDQRRLEIARCMVTQP 172
Cdd:TIGR03719 104 neisakyaepdadFDKLAAEQA---ELQEIIDAADAWdLDSqLEIAMDALRcppwdaDVTKLSGGERRRVALCRLLLSKP 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1821658505 173 AILMLDEPaaglnpkeTKELD-ELIVELRNH---HNTTILLIEHD 213
Cdd:TIGR03719 181 DMLLLDEP--------TNHLDaESVAWLERHlqeYPGTVVAVTHD 217
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
22-105 |
1.95e-03 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 38.25 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 22 NNVSLELREReIVSLIGPNGAGKTTVFNC----LTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVVR-TFQHVRLFREMT 96
Cdd:pfam13476 10 RDQTIDFSKG-LTLITGPNGSGKTTILDAiklaLYGKTSRLKRKSGGGFVKGDIRIGLEGKGKAYVEiTFENNDGRYTYA 88
|
....*....
gi 1821658505 97 VIENLLVAQ 105
Cdd:pfam13476 89 IERSRELSK 97
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
136-207 |
3.04e-03 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 38.66 E-value: 3.04e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1821658505 136 TWLERINLLQ-HANRQAGNLAYGDQRRLEIARCMVTQ--PAILMLDEPAAGLNPKETKELDELIVELRNHHNTTI 207
Cdd:PRK00635 1369 TFIDKVGLSYiTLGQEQDTLSDGEHYRLHLAKKISSNltDIIYLLEDPLSGLHPQDAPTLLQLIKELVTNNNTVI 1443
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
177-246 |
3.95e-03 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 38.52 E-value: 3.95e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1821658505 177 LDEPAAGLNPKETKELDELIVELRNHHNTtILLIEHDMKlVMGISDriYVV--------NQGTPLANGTPEQIRNNPD 246
Cdd:PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNT-VVVIEHNLD-VIKTAD--WIIdlgpeggdGGGEIVATGTPEEVAKVEA 930
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
170-246 |
4.70e-03 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 38.08 E-value: 4.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 170 TQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTtILLIEHDMKlVMGISDriYVV--------NQGTPLANGTPEQI 241
Cdd:COG0178 846 TGKTLYILDEPTTGLHFHDIRKLLEVLHRLVDKGNT-VVVIEHNLD-VIKTAD--WIIdlgpeggdGGGEIVAEGTPEEV 921
|
....*
gi 1821658505 242 RNNPD 246
Cdd:COG0178 922 AKVKA 926
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
177-252 |
5.30e-03 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 37.74 E-value: 5.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 177 LDEPAAGLNPKETKELDELIVELRNHHNTTIlLIEHDmKLVMGISDriYVV--------NQGTPLANGTPEQIRNNPDVI 248
Cdd:PRK00349 515 LDEPSIGLHQRDNDRLIETLKHLRDLGNTLI-VVEHD-EDTIRAAD--YIVdigpgagvHGGEVVASGTPEEIMKNPNSL 590
|
....*
gi 1821658505 249 R-AYL 252
Cdd:PRK00349 591 TgQYL 595
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
20-245 |
5.31e-03 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 37.77 E-value: 5.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 20 AVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQI-ARMGVVRtfQHVRLFREmTVI 98
Cdd:PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWrSRLAVVS--QTPFLFSD-TVA 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 99 ENLLvaqhqqlksglfsglLKTPAFRRAHSEALDRAATWLERI-NLLQHANRQAGN----LAYGDQRRLEIARCMVTQPA 173
Cdd:PRK10789 407 NNIA---------------LGRPDATQQEIEHVARLASVHDDIlRLPQGYDTEVGErgvmLSGGQKQRISIARALLLNAE 471
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1821658505 174 ILMLDEpaaGLNPKETKELDELIVELRN-HHNTTILLIEHDMKLVMGiSDRIYVVNQGTPLANGTPEQIRNNP 245
Cdd:PRK10789 472 ILILDD---ALSAVDGRTEHQILHNLRQwGEGRTVIISAHRLSALTE-ASEILVMQHGHIAQRGNHDQLAQQS 540
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
32-209 |
7.11e-03 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 37.78 E-value: 7.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 32 EIVSLIGPNGAGKTTVFNCLT----GFYKPTGGTImlrdqHLEGLPGQQIA---RMGVVRTFQHVRLFREMTVIENLLva 104
Cdd:TIGR00956 88 ELTVVLGRPGSGCSTLLKTIAsntdGFHIGVEGVI-----TYDGITPEEIKkhyRGDVVYNAETDVHFPHLTVGETLD-- 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1821658505 105 qhqqlksglFSGLLKTPAFRRAHSEALDRA---ATWLERINLLQHA-NRQAGN-----LAYGDQRRLEIARCMVTQPAIL 175
Cdd:TIGR00956 161 ---------FAARCKTPQNRPDGVSREEYAkhiADVYMATYGLSHTrNTKVGNdfvrgVSGGERKRVSIAEASLGGAKIQ 231
|
170 180 190
....*....|....*....|....*....|....
gi 1821658505 176 MLDEPAAGLNPKETKELDELIVELRNHHNTTILL 209
Cdd:TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLV 265
|
|
| |
