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Conserved domains on  [gi|1837855995|gb|QJP58663|]
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hydroxymethylglutaryl-CoA lyase [Bordetella parapertussis]

Protein Classification

hydroxymethylglutaryl-CoA lyase( domain architecture ID 10168151)

hydroxymethylglutaryl-CoA lyase catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DRE_TIM_HMGL cd07938
3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain; ...
7-281 5.26e-142

3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain; 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".


:

Pssm-ID: 163676  Cd Length: 274  Bit Score: 401.39  E-value: 5.26e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995   7 ITDVSPRDGLQNQPAQVPTQEKLRLIRLLAEAGVRSVEATSFVSPRAVPQMADAAELVAQVHAAlPDLRTSVLVPNLKGL 86
Cdd:cd07938     1 IVEVGPRDGLQNEKTFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRR-PGVRYSALVPNLRGA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  87 ERALAAGAREIAVVLSATETMNRKNINMGLAQAVSVSEQTLAAARGAGLRTRAYVAVAFDCPFEGATPLADVLRLAAAMY 166
Cdd:cd07938    80 ERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 167 AAGADEIVIADTIGSAAPGEVKTRLRALRDVAPLERLAVHFHDTRGMGVANAWAALEAGVRRFDASVGGIGGCPFAPGAA 246
Cdd:cd07938   160 DLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDSSVGGLGGCPFAPGAT 239
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1837855995 247 GNLATEDLVLMAERSGFASGISLDGLLRAVDAAQA 281
Cdd:cd07938   240 GNVATEDLVYMLEGMGIETGIDLDKLLAAARWISE 274
 
Name Accession Description Interval E-value
DRE_TIM_HMGL cd07938
3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain; ...
7-281 5.26e-142

3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain; 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".


Pssm-ID: 163676  Cd Length: 274  Bit Score: 401.39  E-value: 5.26e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995   7 ITDVSPRDGLQNQPAQVPTQEKLRLIRLLAEAGVRSVEATSFVSPRAVPQMADAAELVAQVHAAlPDLRTSVLVPNLKGL 86
Cdd:cd07938     1 IVEVGPRDGLQNEKTFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRR-PGVRYSALVPNLRGA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  87 ERALAAGAREIAVVLSATETMNRKNINMGLAQAVSVSEQTLAAARGAGLRTRAYVAVAFDCPFEGATPLADVLRLAAAMY 166
Cdd:cd07938    80 ERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 167 AAGADEIVIADTIGSAAPGEVKTRLRALRDVAPLERLAVHFHDTRGMGVANAWAALEAGVRRFDASVGGIGGCPFAPGAA 246
Cdd:cd07938   160 DLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDSSVGGLGGCPFAPGAT 239
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1837855995 247 GNLATEDLVLMAERSGFASGISLDGLLRAVDAAQA 281
Cdd:cd07938   240 GNVATEDLVYMLEGMGIETGIDLDKLLAAARWISE 274
PRK05692 PRK05692
hydroxymethylglutaryl-CoA lyase; Provisional
1-288 3.97e-116

hydroxymethylglutaryl-CoA lyase; Provisional


Pssm-ID: 180206  Cd Length: 287  Bit Score: 336.09  E-value: 3.97e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995   1 MQERIHITDVSPRDGLQNQPAQVPTQEKLRLIRLLAEAGVRSVEATSFVSPRAVPQMADAAELVAQVHAAlPDLRTSVLV 80
Cdd:PRK05692    1 LPKRVKIVEVGPRDGLQNEKRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRR-PGVTYAALT 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  81 PNLKGLERALAAGAREIAVVLSATETMNRKNINMGLAQAVSVSEQTLAAARGAGLRTRAYVAVAFDCPFEGATPLADVLR 160
Cdd:PRK05692   80 PNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVAD 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 161 LAAAMYAAGADEIVIADTIGSAAPGEVKTRLRALRDVAPLERLAVHFHDTRGMGVANAWAALEAGVRRFDASVGGIGGCP 240
Cdd:PRK05692  160 VAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGLGGCP 239
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1837855995 241 FAPGAAGNLATEDLVLMAERSGFASGISLDGLLRAVDAAQAQLQRPLG 288
Cdd:PRK05692  240 YAPGASGNVATEDVLYMLHGLGIETGIDLDKLVRAGQFIQSKLGRPLP 287
HMGL-like pfam00682
HMGL-like; This family contains a diverse set of enzymes. These include various aldolases and ...
4-277 1.04e-46

HMGL-like; This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase.


Pssm-ID: 459902 [Multi-domain]  Cd Length: 264  Bit Score: 158.27  E-value: 1.04e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995   4 RIHITDVSPRDGLQNQPAQVPTQEKLRLIRLLAEAGVRSVEA-------TSFVSPRAVPQMADAAELVAQVHAALPDLRT 76
Cdd:pfam00682   1 AVAICDTTLRDGEQALGVAFSIDEKLAIARALDAAGVDEIEVgfpaaseDDFEVVRAIAKVIPHARILVLCRAREHDIKA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  77 SVlvpnlkglERALAAGAREIAVVLSATETMNRKNINMGLAQAVSVSEQTLAAARGAGLRtrayvaVAFDCPFEGATPLA 156
Cdd:pfam00682  81 AV--------EALKGAGAVRVHVFIATSDLHRKYKLGKDREEVAKRAVAAVKAARSRGID------VEFSPEDASRTDPE 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 157 DVLRLAAAMYAAGADEIVIADTIGSAAPGEVKTRLRALRDVAPLE-RLAVHFHDTRGMGVANAWAALEAGVRRFDASVGG 235
Cdd:pfam00682 147 FLAEVVEAAIEAGATRINIPDTVGVLTPNEAAELISALKARVPNKaIISVHCHNDLGMAVANSLAAVEAGADRVDGTVNG 226
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1837855995 236 IGgcpfapGAAGNLATEDLVLMAERSGFASGISLDGLLRAVD 277
Cdd:pfam00682 227 IG------ERAGNAALEEVAAALEGLGVDTGLDLQRLRSIAN 262
LeuA COG0119
Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]; ...
3-274 6.79e-27

Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]; Isopropylmalate/homocitrate/citramalate synthases is part of the Pathway/BioSystem: Isoleucine, leucine, valine biosynthesis


Pssm-ID: 439889 [Multi-domain]  Cd Length: 452  Bit Score: 109.10  E-value: 6.79e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995   3 ERIHITDVSPRDGLQNQPAQVPTQEKLRLIRLLAEAGVRSVEATSFV-SP------RAVPQMADAAELVAQVHAALPDLR 75
Cdd:COG0119     2 DRIIIFDTTLRDGEQAPGVSFSVEEKLRIARLLDELGVDEIEAGFPAaSPgdfeavRRIAELGLDATICALARARRKDID 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  76 TSvlvpnlkgLERALAAGAREIAVVLSATETMNRKNINMGLAQAVSVSEQTLAAARGAGLRtrayvaVAFDCpfEGA--T 153
Cdd:COG0119    82 AA--------LEALKGAGVDRVHLFIKTSDLHVEYKLRKTREEVLEMAVEAVKYAKEHGLE------VEFSA--EDAtrT 145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 154 PLADVLRLAAAMYAAGADEIVIADTIGSAAPGEVKTRLRALRDVAPLERLAVHFHDTRGMGVANAWAALEAGVRRFDASV 233
Cdd:COG0119   146 DPDFLLEVLEAAIEAGADRINLPDTVGGATPNEVADLIEELRERVPDVILSVHCHNDLGLAVANSLAAVEAGADQVEGTI 225
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1837855995 234 GGIGgcpfapGAAGNLATEDLVL-MAERSGFASGISLDGLLR 274
Cdd:COG0119   226 NGIG------ERAGNAALEEVVMnLKLKYGVDTGIDLSKLTE 261
 
Name Accession Description Interval E-value
DRE_TIM_HMGL cd07938
3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain; ...
7-281 5.26e-142

3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain; 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".


Pssm-ID: 163676  Cd Length: 274  Bit Score: 401.39  E-value: 5.26e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995   7 ITDVSPRDGLQNQPAQVPTQEKLRLIRLLAEAGVRSVEATSFVSPRAVPQMADAAELVAQVHAAlPDLRTSVLVPNLKGL 86
Cdd:cd07938     1 IVEVGPRDGLQNEKTFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRR-PGVRYSALVPNLRGA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  87 ERALAAGAREIAVVLSATETMNRKNINMGLAQAVSVSEQTLAAARGAGLRTRAYVAVAFDCPFEGATPLADVLRLAAAMY 166
Cdd:cd07938    80 ERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 167 AAGADEIVIADTIGSAAPGEVKTRLRALRDVAPLERLAVHFHDTRGMGVANAWAALEAGVRRFDASVGGIGGCPFAPGAA 246
Cdd:cd07938   160 DLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDSSVGGLGGCPFAPGAT 239
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1837855995 247 GNLATEDLVLMAERSGFASGISLDGLLRAVDAAQA 281
Cdd:cd07938   240 GNVATEDLVYMLEGMGIETGIDLDKLLAAARWISE 274
PRK05692 PRK05692
hydroxymethylglutaryl-CoA lyase; Provisional
1-288 3.97e-116

hydroxymethylglutaryl-CoA lyase; Provisional


Pssm-ID: 180206  Cd Length: 287  Bit Score: 336.09  E-value: 3.97e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995   1 MQERIHITDVSPRDGLQNQPAQVPTQEKLRLIRLLAEAGVRSVEATSFVSPRAVPQMADAAELVAQVHAAlPDLRTSVLV 80
Cdd:PRK05692    1 LPKRVKIVEVGPRDGLQNEKRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRR-PGVTYAALT 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  81 PNLKGLERALAAGAREIAVVLSATETMNRKNINMGLAQAVSVSEQTLAAARGAGLRTRAYVAVAFDCPFEGATPLADVLR 160
Cdd:PRK05692   80 PNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVAD 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 161 LAAAMYAAGADEIVIADTIGSAAPGEVKTRLRALRDVAPLERLAVHFHDTRGMGVANAWAALEAGVRRFDASVGGIGGCP 240
Cdd:PRK05692  160 VAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGLGGCP 239
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1837855995 241 FAPGAAGNLATEDLVLMAERSGFASGISLDGLLRAVDAAQAQLQRPLG 288
Cdd:PRK05692  240 YAPGASGNVATEDVLYMLHGLGIETGIDLDKLVRAGQFIQSKLGRPLP 287
PLN02746 PLN02746
hydroxymethylglutaryl-CoA lyase
1-297 2.00e-93

hydroxymethylglutaryl-CoA lyase


Pssm-ID: 178347  Cd Length: 347  Bit Score: 280.52  E-value: 2.00e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995   1 MQERIHITDVSPRDGLQNQPAQVPTQEKLRLIRLLAEAGVRSVEATSFVSPRAVPQMADAAELVAQVHAaLPDLRTSVLV 80
Cdd:PLN02746   43 LPKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN-LEGARFPVLT 121
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  81 PNLKGLERALAAGAREIAVVLSATETMNRKNINMGLAQAVSVSEQTLAAARGAGLRTRAYVAVAFDCPFEGATPLADVLR 160
Cdd:PLN02746  122 PNLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAY 201
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 161 LAAAMYAAGADEIVIADTIGSAAPGEVKTRLRALRDVAPLERLAVHFHDTRGMGVANAWAALEAGVRRFDASVGGIGGCP 240
Cdd:PLN02746  202 VAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMGISTVDSSVAGLGGCP 281
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1837855995 241 FAPGAAGNLATEDLVLMAERSGFASGISLDGLLRAVDAAQAQLQRPLGGRSMAWLRR 297
Cdd:PLN02746  282 YAKGASGNVATEDVVYMLNGLGVSTNVDLGKLMAAGDFISKHLGRPSGSKTAVALSA 338
DRE_TIM_metallolyase cd03174
DRE-TIM metallolyase superfamily; The DRE-TIM metallolyase superfamily includes ...
8-277 4.49e-90

DRE-TIM metallolyase superfamily; The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".


Pssm-ID: 163674 [Multi-domain]  Cd Length: 265  Bit Score: 269.33  E-value: 4.49e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995   8 TDVSPRDGLQNQPAQVPTQEKLRLIRLLAEAGVRSVEATSFVSPRAVPQMADAAELVAQVHAALPDLRTSVLVPN-LKGL 86
Cdd:cd03174     1 TDTTLRDGLQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNrEKGI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  87 ERALAAGAREIAVVLSATETMNRKNINMGLAQAVSVSEQTLAAARGAGLRTRAYVAVAFDCpfegATPLADVLRLAAAMY 166
Cdd:cd03174    81 ERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC----KTDPEYVLEVAKALE 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 167 AAGADEIVIADTIGSAAPGEVKTRLRALRDVAPLERLAVHFHDTRGMGVANAWAALEAGVRRFDASVGGIGgcpfapGAA 246
Cdd:cd03174   157 EAGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLG------ERA 230
                         250       260       270
                  ....*....|....*....|....*....|.
gi 1837855995 247 GNLATEDLVLMAERSGFASGISLDGLLRAVD 277
Cdd:cd03174   231 GNAATEDLVAALEGLGIDTGIDLEKLLEISR 261
HMGL-like pfam00682
HMGL-like; This family contains a diverse set of enzymes. These include various aldolases and ...
4-277 1.04e-46

HMGL-like; This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase.


Pssm-ID: 459902 [Multi-domain]  Cd Length: 264  Bit Score: 158.27  E-value: 1.04e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995   4 RIHITDVSPRDGLQNQPAQVPTQEKLRLIRLLAEAGVRSVEA-------TSFVSPRAVPQMADAAELVAQVHAALPDLRT 76
Cdd:pfam00682   1 AVAICDTTLRDGEQALGVAFSIDEKLAIARALDAAGVDEIEVgfpaaseDDFEVVRAIAKVIPHARILVLCRAREHDIKA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  77 SVlvpnlkglERALAAGAREIAVVLSATETMNRKNINMGLAQAVSVSEQTLAAARGAGLRtrayvaVAFDCPFEGATPLA 156
Cdd:pfam00682  81 AV--------EALKGAGAVRVHVFIATSDLHRKYKLGKDREEVAKRAVAAVKAARSRGID------VEFSPEDASRTDPE 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 157 DVLRLAAAMYAAGADEIVIADTIGSAAPGEVKTRLRALRDVAPLE-RLAVHFHDTRGMGVANAWAALEAGVRRFDASVGG 235
Cdd:pfam00682 147 FLAEVVEAAIEAGATRINIPDTVGVLTPNEAAELISALKARVPNKaIISVHCHNDLGMAVANSLAAVEAGADRVDGTVNG 226
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1837855995 236 IGgcpfapGAAGNLATEDLVLMAERSGFASGISLDGLLRAVD 277
Cdd:pfam00682 227 IG------ERAGNAALEEVAAALEGLGVDTGLDLQRLRSIAN 262
LeuA COG0119
Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]; ...
3-274 6.79e-27

Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]; Isopropylmalate/homocitrate/citramalate synthases is part of the Pathway/BioSystem: Isoleucine, leucine, valine biosynthesis


Pssm-ID: 439889 [Multi-domain]  Cd Length: 452  Bit Score: 109.10  E-value: 6.79e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995   3 ERIHITDVSPRDGLQNQPAQVPTQEKLRLIRLLAEAGVRSVEATSFV-SP------RAVPQMADAAELVAQVHAALPDLR 75
Cdd:COG0119     2 DRIIIFDTTLRDGEQAPGVSFSVEEKLRIARLLDELGVDEIEAGFPAaSPgdfeavRRIAELGLDATICALARARRKDID 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  76 TSvlvpnlkgLERALAAGAREIAVVLSATETMNRKNINMGLAQAVSVSEQTLAAARGAGLRtrayvaVAFDCpfEGA--T 153
Cdd:COG0119    82 AA--------LEALKGAGVDRVHLFIKTSDLHVEYKLRKTREEVLEMAVEAVKYAKEHGLE------VEFSA--EDAtrT 145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 154 PLADVLRLAAAMYAAGADEIVIADTIGSAAPGEVKTRLRALRDVAPLERLAVHFHDTRGMGVANAWAALEAGVRRFDASV 233
Cdd:COG0119   146 DPDFLLEVLEAAIEAGADRINLPDTVGGATPNEVADLIEELRERVPDVILSVHCHNDLGLAVANSLAAVEAGADQVEGTI 225
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1837855995 234 GGIGgcpfapGAAGNLATEDLVL-MAERSGFASGISLDGLLR 274
Cdd:COG0119   226 NGIG------ERAGNAALEEVVMnLKLKYGVDTGIDLSKLTE 261
DRE_TIM_HOA cd07943
4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain; 4-hydroxy ...
5-287 5.28e-23

4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain; 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".


Pssm-ID: 163681  Cd Length: 263  Bit Score: 95.64  E-value: 5.28e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995   5 IHITDVSPRDGLQNQPAQVPTQEKLRLIRLLAEAGVRSVE--------ATSF-VSPRAVPQMadaaELVAQVHAALPDLR 75
Cdd:cd07943     1 VYIHDVTLRDGMHAVRHQFTLEQVRAIARALDAAGVPLIEvghgdglgGSSLnYGFAAHTDE----EYLEAAAEALKQAK 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  76 TSVL-VP---NLKGLERALAAGAREIAVVLSATEtmnrkninmglaqaVSVSEQTLAAARGAGLRTRAYVAVAfdcpfeG 151
Cdd:cd07943    77 LGVLlLPgigTVDDLKMAADLGVDVVRVATHCTE--------------ADVSEQHIGAARKLGMDVVGFLMMS------H 136
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 152 ATPLADVLRLAAAMYAAGADEIVIADTIGSAAPGEVKTRLRALRDVAPLERLAVHFHDTRGMGVANAWAALEAGVRRFDA 231
Cdd:cd07943   137 MASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRIDG 216
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1837855995 232 SVGGIGGCpfapgaAGNLATEDLVLMAERSGFASGISLDGLLravDAAQaQLQRPL 287
Cdd:cd07943   217 SLAGLGAG------AGNTPLEVLVAVLERMGIETGIDLYKLM---DAAE-DLVRPL 262
DRE_TIM_HCS cd07948
Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel ...
7-237 2.64e-20

Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain; Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".


Pssm-ID: 163685  Cd Length: 262  Bit Score: 88.16  E-value: 2.64e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995   7 ITDVSPRDGLQNQPAQVPTQEKLRLIRLLAEAGVRSVEATSfvsPRAVPQMADAAELVAQVhaalpDLRTSVLVP---NL 83
Cdd:cd07948     3 IIDSTLREGEQFANAFFDTEDKIEIAKALDAFGVDYIELTS---PAASPQSRADCEAIAKL-----GLKAKILTHircHM 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  84 KGLERALAAGAREIAVVLSATETMNR----KNINMGLAQAVSVSEqtlaAARGAGLRTRayvavaFDCPFEGATPLADVL 159
Cdd:cd07948    75 DDARIAVETGVDGVDLVFGTSPFLREashgKSITEIIESAVEVIE----FVKSKGIEVR------FSSEDSFRSDLVDLL 144
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1837855995 160 RLAAAMYAAGADEIVIADTIGSAAPGEVKTRLRALRDVAPLErLAVHFHDTRGMGVANAWAALEAGVRRFDASVGGIG 237
Cdd:cd07948   145 RVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVSCD-IEFHGHNDTGCAIANAYAALEAGATHIDTTVLGIG 221
PRK08195 PRK08195
4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
4-287 4.26e-18

4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated


Pssm-ID: 181282 [Multi-domain]  Cd Length: 337  Bit Score: 83.34  E-value: 4.26e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995   4 RIHITDVSPRDGLQNQPAQVPTQEKLRLIRLLAEAGVRSVEAT--------SF-VSPRAVPQMadaaELVAQVHAALPDL 74
Cdd:PRK08195    3 KIYISDVTLRDGMHAVRHQYTLEQVRAIARALDAAGVPVIEVThgdglggsSFnYGFGAHTDE----EYIEAAAEVVKQA 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  75 RTSVL-VPNL---KGLERALAAGAREIAVVLSATETmnrkninmglaqavSVSEQTLAAARGAGLRTRAYVAVAFDCPFE 150
Cdd:PRK08195   79 KIAALlLPGIgtvDDLKMAYDAGVRVVRVATHCTEA--------------DVSEQHIGLARELGMDTVGFLMMSHMAPPE 144
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 151 GatpLADVLRLAAAMYAagaDEIVIADTIGSAAPGEVKTRLRALRDVAPLE-RLAVHFHDTRGMGVANAWAALEAGVRRF 229
Cdd:PRK08195  145 K---LAEQAKLMESYGA---QCVYVVDSAGALLPEDVRDRVRALRAALKPDtQVGFHGHNNLGLGVANSLAAVEAGATRI 218
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1837855995 230 DASVGGIGgcpfapGAAGNLATEDLVLMAERSGFASGISLDGLLravDAAQaQLQRPL 287
Cdd:PRK08195  219 DGSLAGLG------AGAGNTPLEVLVAVLDRMGWETGVDLYKLM---DAAE-DLVRPL 266
aksA PRK11858
trans-homoaconitate synthase; Reviewed
4-258 2.54e-15

trans-homoaconitate synthase; Reviewed


Pssm-ID: 183341 [Multi-domain]  Cd Length: 378  Bit Score: 75.60  E-value: 2.54e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995   4 RIHITDVSPRDGLQNqPAQVPT-QEKLRLIRLLAEAGVRSVEAtsfvsprAVPQM-ADAAELVAQVhAALpDLRTSVLV- 80
Cdd:PRK11858    4 DIEIVDTTLRDGEQT-PGVVFTnEEKLAIARMLDEIGVDQIEA-------GFPAVsEDEKEAIKAI-AKL-GLNASILAl 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  81 --PNLKGLERALAAGAREIAVVLSATETMNRKNINMGLAQAVSVSEQTLAAARGAGLrtraYVAVAFdcpfEGA--TPLA 156
Cdd:PRK11858   74 nrAVKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGL----YVSFSA----EDAsrTDLD 145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 157 DVLRLAAAMYAAGADEIVIADTIGSAAPGEVKTRLRALRDVAPLErLAVHFHDTRGMGVANAWAALEAGVRRFDASVGGI 236
Cdd:PRK11858  146 FLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAVDIP-IEVHCHNDFGMATANALAGIEAGAKQVHTTVNGL 224
                         250       260
                  ....*....|....*....|..
gi 1837855995 237 GgcpfapGAAGNLATEDlVLMA 258
Cdd:PRK11858  225 G------ERAGNAALEE-VVMA 239
DRE_TIM_IPMS cd07940
2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain; 2-isopropylmalate ...
7-258 1.18e-13

2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain; 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-hydroxy-1,2,6- hexanetricarboxylic acid. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".


Pssm-ID: 163678  Cd Length: 268  Bit Score: 69.40  E-value: 1.18e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995   7 ITDVSPRDGLQNQPAQVPTQEKLRLIRLLAEAGVRSVEAtSF--VSP---RAVPQMADAaelvaqvhaalpdlrtsVLVP 81
Cdd:cd07940     1 IFDTTLRDGEQTPGVSLTPEEKLEIARQLDELGVDVIEA-GFpaASPgdfEAVKRIARE-----------------VLNA 62
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  82 NLKGLERALAagaREIAVVLSATETMNRKNINMGLA---------------QAVSVSEQTLAAARGAGLRtrayvaVAFD 146
Cdd:cd07940    63 EICGLARAVK---KDIDAAAEALKPAKVDRIHTFIAtsdihlkyklkktreEVLERAVEAVEYAKSHGLD------VEFS 133
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 147 CpfEGA--TPLADVLRLAAAMYAAGADEIVIADTIGSAAPGEVKTRLRALRDVAPLER--LAVHFHDTRGMGVANAWAAL 222
Cdd:cd07940   134 A--EDAtrTDLDFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKvpISVHCHNDLGLAVANSLAAV 211
                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1837855995 223 EAGVRRFDASVGGIGgcpfapGAAGNLATEDLVlMA 258
Cdd:cd07940   212 EAGARQVECTINGIG------ERAGNAALEEVV-MA 240
DRE_TIM_NifV cd07939
Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain; FrbC (NifV) ...
7-272 1.77e-13

Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain; FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".


Pssm-ID: 163677 [Multi-domain]  Cd Length: 259  Bit Score: 69.07  E-value: 1.77e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995   7 ITDVSPRDGLQNQPAQVPTQEKLRLIRLLAEAGVRSVEAtsfvsprAVPQMADAAELVAQVHAALpDLRTSVLV---PNL 83
Cdd:cd07939     1 INDTTLRDGEQAPGVAFSREEKLAIARALDEAGVDEIEV-------GIPAMGEEEREAIRAIVAL-GLPARLIVwcrAVK 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  84 KGLERALAAGAREIAVVLSATETMNRKNINMGLAQAVSVSEQTLAAARGAGLrtraYVAVAFdcpfEGA--TPLADVLRL 161
Cdd:cd07939    73 EDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGL----FVSVGA----EDAsrADPDFLIEF 144
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 162 AAAMYAAGADEIVIADTIGSAAPGEVKTRLRALRDVAPLErLAVHFHDTRGMGVANAWAALEAGVRRFDASVGGIGgcpf 241
Cdd:cd07939   145 AEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATDLP-LEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLG---- 219
                         250       260       270
                  ....*....|....*....|....*....|..
gi 1837855995 242 apGAAGNLATEDLVLMAERS-GFASGISLDGL 272
Cdd:cd07939   220 --ERAGNAALEEVVMALKHLyGRDTGIDTTRL 249
DRE_TIM_CMS cd07945
Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic ...
9-237 1.43e-10

Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain; Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".


Pssm-ID: 163683 [Multi-domain]  Cd Length: 280  Bit Score: 60.85  E-value: 1.43e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995   9 DVSPRDGLQNQPAQVPTQEKLRLIR-LLAEAGVRSVEATSF-VSP---RAVPQMADAAELVAQVHaalpdlRTSVL--VP 81
Cdd:cd07945     2 DTTLRDGEQTSGVSFSPSEKLNIAKiLLQELKVDRIEVASArVSEgefEAVQKIIDWAAEEGLLD------RIEVLgfVD 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  82 NLKGLERALAAGAREIAVVLSATETMNRKNINMGLAQAVSVSEQTLAAARGAGLRTRAYvavafdcpfegatpLAD---- 157
Cdd:cd07945    76 GDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIY--------------LEDwsng 141
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 158 -------VLRLAAAMYAAGADEIVIADTIGSAAPGEVKTRLRALRDVAPLERLAVHFHDTRGMGVANAWAALEAGVRRFD 230
Cdd:cd07945   142 mrdspdyVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLH 221

                  ....*..
gi 1837855995 231 ASVGGIG 237
Cdd:cd07945   222 TTVNGLG 228
PRK00915 PRK00915
2-isopropylmalate synthase; Validated
1-258 1.29e-09

2-isopropylmalate synthase; Validated


Pssm-ID: 234864 [Multi-domain]  Cd Length: 513  Bit Score: 58.58  E-value: 1.29e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995   1 MQERIHITDVSPRDGLQNQPAQVPTQEKLRLIRLLAEAGVRSVEAtSF--VSP---RAVPQMADAaelvaqvhaalpdLR 75
Cdd:PRK00915    1 MMDRVIIFDTTLRDGEQSPGASLTVEEKLQIAKQLERLGVDVIEA-GFpaSSPgdfEAVKRIART-------------VK 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  76 TSVLVpnlkGLERALA------------AGAREIAVVLsATETMNRKN-INMGLAQAVSVSEQTLAAARGAGlrtrayVA 142
Cdd:PRK00915   67 NSTVC----GLARAVKkdidaaaealkpAEAPRIHTFI-ATSPIHMEYkLKMSREEVLEMAVEAVKYARSYT------DD 135
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 143 VAFDCpfEGA--TPLADVLRLAAAMYAAGADEIVIADTIGSAAPGEVKTRLRALRDVAPLERLA---VHFHDTRGMGVAN 217
Cdd:PRK00915  136 VEFSA--EDAtrTDLDFLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAiisVHCHNDLGLAVAN 213
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1837855995 218 AWAALEAGVRRFDASVGGIGgcpfapGAAGNLATEDLVlMA 258
Cdd:PRK00915  214 SLAAVEAGARQVECTINGIG------ERAGNAALEEVV-MA 247
PLN03228 PLN03228
methylthioalkylmalate synthase; Provisional
2-280 4.15e-09

methylthioalkylmalate synthase; Provisional


Pssm-ID: 178767 [Multi-domain]  Cd Length: 503  Bit Score: 57.24  E-value: 4.15e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995   2 QERIHITDVSPRDGLQNQPAQVPTQEKLRLIRLLAEAGVRSVEAtSFvsPRAVPQMADAAELVAQVHAALPDLRTSvLVP 81
Cdd:PLN03228   82 KNYVRVLDTTLRDGEQSPGGSLTPPQKLEIARQLAKLRVDIMEV-GF--PGSSEEEFEAVKTIAKTVGNEVDEETG-YVP 157
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  82 NLKGLER-----------ALAAGAREIAVVLSATETMNRK-NINMGLAQAVSVSEQTLAAARGAGLRTrayvaVAFDCPF 149
Cdd:PLN03228  158 VICGIARckkrdieaaweALKYAKRPRILAFTSTSDIHMKyKLKKTKEEVIEMAVSSIRYAKSLGFHD-----IQFGCED 232
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 150 EGATPLADVLRLAAAMYAAGADEIVIADTIGSAAP---GEVKTRLRALRDVAPLERLAVHFHDTRGMGVANAWAALEAGV 226
Cdd:PLN03228  233 GGRSDKEFLCKILGEAIKAGATSVGIADTVGINMPhefGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICAGA 312
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1837855995 227 RRFDASVGGIGgcpfapGAAGNLATEDLVL-MAERSGFAsgisLDGLLRAVDAAQ 280
Cdd:PLN03228  313 RQVEVTINGIG------ERSGNASLEEVVMaLKCRGAYL----MNGVYTGIDTRQ 357
DRE_TIM_LeuA3 cd07941
Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel ...
13-237 2.16e-08

Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain; Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".


Pssm-ID: 163679  Cd Length: 273  Bit Score: 54.00  E-value: 2.16e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  13 RDGLQNQPAQVPTQEKLRLIRLLAEAGVRSVEATSfvsPRAVPQmaDAA--ELVAQVhaalpDLRTSVLV---------- 80
Cdd:cd07941     7 RDGTQGEGISFSVEDKLRIARKLDELGVDYIEGGW---PGSNPK--DTEffARAKKL-----KLKHAKLAafgstrragv 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  81 -----PNLKGLeraLAAGAREIAV--------VLSATETMNRKNINMglaqavsVSEqTLAAARGAGLRtrayvaVAFDC 147
Cdd:cd07941    77 kaeedPNLQAL---LEAGTPVVTIfgkswdlhVTEALGTTLEENLAM-------IRD-SVAYLKSHGRE------VIFDA 139
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 148 P--FEG--ATP---LAdVLRlaaAMYAAGADEIVIADTIGSAAPGEVKTRLRALRDVAPLERLAVHFHDTRGMGVANAWA 220
Cdd:cd07941   140 EhfFDGykANPeyaLA-TLK---AAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLA 215
                         250
                  ....*....|....*..
gi 1837855995 221 ALEAGVRRFDASVGGIG 237
Cdd:cd07941   216 AVEAGATQVQGTINGYG 232
DRE_TIM_PC_TC_5S cd07937
Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain; This family includes ...
171-277 4.49e-08

Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain; This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex. In addition to the catalytic domain, transcarboxylase 5S has several other domains including a carbamoyl-phosphate synthase domain, a biotin carboxylase domain, a carboxyltransferase domain, and an ATP-grasp domain. Pyruvate carboxylase, like TC, is a biotin-dependent enzyme that catalyzes the carboxylation of pyruvate to produce oxaloacetate. In mammals, PC has critical roles in gluconeogenesis, lipogenesis, glyceroneogenesis, and insulin secretion. Inherited PC deficiencies are linked to serious diseases in humans such as lactic acidemia, hypoglycemia, psychomotor retardation, and death. PC is a single-chain enzyme and is active only in its homotetrameric form. PC has three domains, an N-terminal biotin carboxylase domain, a carboxyltransferase domain (this alignment model), and a C-terminal biotin-carboxyl carrier protein domain. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".


Pssm-ID: 163675  Cd Length: 275  Bit Score: 53.20  E-value: 4.49e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 171 DEIVIADTIGSAAPGEVKTRLRALRDVAPLeRLAVHFHDTRGMGVANAWAALEAGVRRFDASVGGIGGCPFAPgaagnlA 250
Cdd:cd07937   164 DSICIKDMAGLLTPYAAYELVKALKKEVGL-PIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLSGGTSQP------S 236
                          90       100
                  ....*....|....*....|....*..
gi 1837855995 251 TEDLVLMAERSGFASGISLDGLLRAVD 277
Cdd:cd07937   237 TESMVAALRGTGRDTGLDLEKLEEISE 263
PRK09389 PRK09389
(R)-citramalate synthase; Provisional
3-255 8.62e-08

(R)-citramalate synthase; Provisional


Pssm-ID: 236493 [Multi-domain]  Cd Length: 488  Bit Score: 53.02  E-value: 8.62e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995   3 ERIHITDVSPRDGLQNQPAQVPTQEKLRLIRLLAEAGVRSVEATSFV-SP---RAVPQMADAaELVAQVhaalpdlrTSV 78
Cdd:PRK09389    1 MMVRILDTTLRDGEQTPGVSLTPEEKLEIARKLDELGVDVIEAGSAItSEgerEAIKAVTDE-GLNAEI--------CSF 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  79 LVPNLKGLERALAAGAREIAVVLSAT----ETMNRKNINMGLAQAVSVSEQtlaaARGAGLrtraYVAVAFdcpfEGAT- 153
Cdd:PRK09389   72 ARAVKVDIDAALECDVDSVHLVVPTSdlhiEYKLKKTREEVLETAVEAVEY----AKDHGL----IVELSG----EDASr 139
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 154 -PLADVLRLAAAMYAAGADEIVIADTIGSAAPG---EVKTRLRALRDVAplerLAVHFHDTRGMGVANAWAALEAGVRRF 229
Cdd:PRK09389  140 aDLDFLKELYKAGIEAGADRICFCDTVGILTPEktyELFKRLSELVKGP----VSIHCHNDFGLAVANTLAALAAGADQV 215
                         250       260
                  ....*....|....*....|....*.
gi 1837855995 230 DASVGGIGgcpfapGAAGNLATEDLV 255
Cdd:PRK09389  216 HVTINGIG------ERAGNASLEEVV 235
PRK12344 PRK12344
putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
1-237 1.03e-07

putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional


Pssm-ID: 237068 [Multi-domain]  Cd Length: 524  Bit Score: 52.78  E-value: 1.03e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995   1 MQERIHITDVSPRDGLQNQPAQVPTQEKLRLIRLLAEAGVRSVEATSfvsPRAVPQmaDAA--ELVAQVhaalpDLRTSV 78
Cdd:PRK12344    2 MMERIELYDTTLRDGAQGEGISFSVEDKLRIARKLDELGVDYIEGGW---PGSNPK--DTEffKRAKEL-----KLKHAK 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  79 LV---------------PNLKGLeraLAAGAREIAV--------VLSATETMNRKNINMglaqavsVSEqTLAAARGAGL 135
Cdd:PRK12344   72 LAafgstrragvsaeedPNLQAL---LDAGTPVVTIfgkswdlhVTEALRTTLEENLAM-------IRD-SVAYLKAHGR 140
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 136 RtrayvaVAFDCP--FEG--ATP---LAdVLRlaaAMYAAGADEIVIADTIGSAAPGEVKTRLRALRDVAPlERLAVHFH 208
Cdd:PRK12344  141 E------VIFDAEhfFDGykANPeyaLA-TLK---AAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAPG-VPLGIHAH 209
                         250       260
                  ....*....|....*....|....*....
gi 1837855995 209 DTRGMGVANAWAALEAGVRRFDASVGGIG 237
Cdd:PRK12344  210 NDSGCAVANSLAAVEAGARQVQGTINGYG 238
PRK12581 PRK12581
oxaloacetate decarboxylase; Provisional
1-273 1.53e-07

oxaloacetate decarboxylase; Provisional


Pssm-ID: 79056 [Multi-domain]  Cd Length: 468  Bit Score: 52.43  E-value: 1.53e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995   1 MQERIHITDVSPRDGLQNQPA-QVPTQEKLRLIRLLAEAGVRSVEATSFVSPRAVPQM--ADAAELVAQVHAALPDLRTS 77
Cdd:PRK12581    9 MQQQVAITETVLRDGHQSLMAtRLSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFlnEDPWERLRTLKKGLPNTRLQ 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  78 VLV--PNLKGLeRALAAGAREIAVVLSATETMNRKNINMGLAQAVSVsEQTLAAARGAGlrTRAYVAVAFDCpfEGATPL 155
Cdd:PRK12581   89 MLLrgQNLLGY-RHYADDIVDKFISLSAQNGIDVFRIFDALNDPRNI-QQALRAVKKTG--KEAQLCIAYTT--SPVHTL 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 156 ADVLRLAAAMYAAGADEIVIADTIGSAAPGEVKTRLRALRDVAPLErLAVHFHDTRGMGVANAWAALEAGVRRFDASVGg 235
Cdd:PRK12581  163 NYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAMTNLP-LIVHTHATSGISQMTYLAAVEAGADRIDTALS- 240
                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1837855995 236 iggcPFAPGAAgNLATEDLVLMAERSGFasGISLDGLL 273
Cdd:PRK12581  241 ----PFSEGTS-QPATESMYLALKEAGY--DITLDETL 271
DRE_TIM_HOA_like cd07944
4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain; This family of ...
171-285 2.28e-07

4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain; This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".


Pssm-ID: 163682  Cd Length: 266  Bit Score: 51.03  E-value: 2.28e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 171 DEIVIADTIGSAAPGEVKTRLRALR-DVAPLERLAVHFHDTRGMGVANAWAALEAGVRRFDASVGGIGgcpfapGAAGNL 249
Cdd:cd07944   153 DVFYIVDSFGSMYPEDIKRIISLLRsNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMG------RGAGNL 226
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1837855995 250 ATEdLVLMAERSGFASGISLDGLLRAVDAAQAQLQR 285
Cdd:cd07944   227 PTE-LLLDYLNNKFGKKYNLEPVLELIDEYIAPLKK 261
DRE_TIM_Re_CS cd07947
Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain; ...
5-269 3.08e-06

Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain; Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".


Pssm-ID: 163684  Cd Length: 279  Bit Score: 47.70  E-value: 3.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995   5 IHITDVSPRDGLQNQPAqVPTQEKLRLIRLLAEAGVRS--VEATSFV-----SPRAVPQMADAAELVAQVhaalpdlrTS 77
Cdd:cd07947     1 IWITDTTFRDGQQARPP-YTVEQIVKIYDYLHELGGGSgvIRQTEFFlytekDREAVEACLDRGYKFPEV--------TG 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  78 VLVPNLKGLERALAAGAREIAVVLSATETMNRKNINMGLAQAVsvsEQTLAAARGA---GLRTRayvavafdCPFEGAT- 153
Cdd:cd07947    72 WIRANKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAM---EKYLEIVEEAldhGIKPR--------CHLEDITr 140
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 154 --------PLA-DVLRLAAAMYAAGAdeIVIADTIG-------SAAPGEVKTRLRALRDVA--PLERLAVHFHDTRGMGV 215
Cdd:cd07947   141 adiygfvlPFVnKLMKLSKESGIPVK--IRLCDTLGygvpypgASLPRSVPKIIYGLRKDCgvPSENLEWHGHNDFYKAV 218
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1837855995 216 ANAWAALEAGVRRFDASVGGIGgcpfapGAAGNLATEDLVLM-AERSGFASGISL 269
Cdd:cd07947   219 ANAVAAWLYGASWVNCTLLGIG------ERTGNCPLEAMVIEyAQLKGNFDGMNL 267
PRK12331 PRK12331
oxaloacetate decarboxylase subunit alpha;
4-272 9.30e-05

oxaloacetate decarboxylase subunit alpha;


Pssm-ID: 183446 [Multi-domain]  Cd Length: 448  Bit Score: 43.54  E-value: 9.30e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995   4 RIHITDVSPRDGLQNQPA-QVPTQEKLRLIRLLAEAGVRSVE----ATSFVSPRAVPQmaDAAELVAQVHAALPDLRTSV 78
Cdd:PRK12331    3 KIKITETVLRDGQQSLIAtRMTTEEMLPILEKLDNAGYHSLEmwggATFDACLRFLNE--DPWERLRKIRKAVKKTKLQM 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995  79 LV--PNLKG------------LERALAAGAREIAVVLSATETMNrkninmgLAQAVSVSEQTLAAARGAGLRTRA----- 139
Cdd:PRK12331   81 LLrgQNLLGyrnyaddvvesfVQKSVENGIDIIRIFDALNDVRN-------LETAVKATKKAGGHAQVAISYTTSpvhti 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 140 --YVAVAFDCPFEGAtpladvlrlaaamyaagaDEIVIADTIGSAAPG---EVKTRLRALRDVaPLErlaVHFHDTRGMG 214
Cdd:PRK12331  154 dyFVKLAKEMQEMGA------------------DSICIKDMAGILTPYvayELVKRIKEAVTV-PLE---VHTHATSGIA 211
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1837855995 215 VANAWAALEAGVRRFDASVGgiggcPFAPGAAgNLATEDLVLMAERSGFASGISLDGL 272
Cdd:PRK12331  212 EMTYLKAIEAGADIIDTAIS-----PFAGGTS-QPATESMVAALQDLGYDTGLDLEEL 263
PRK14041 PRK14041
pyruvate carboxylase subunit B;
171-277 2.77e-04

pyruvate carboxylase subunit B;


Pssm-ID: 237593 [Multi-domain]  Cd Length: 467  Bit Score: 42.08  E-value: 2.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 171 DEIVIADTIGSAAPGEVKTRLRALRDV--APLErlaVHFHDTRGMGVANAWAALEAGVRRFDASVGgiggcPFAPGAAgN 248
Cdd:PRK14041  168 DSICIKDMAGLLTPKRAYELVKALKKKfgVPVE---VHSHCTTGLASLAYLAAVEAGADMFDTAIS-----PFSMGTS-Q 238
                          90       100
                  ....*....|....*....|....*....
gi 1837855995 249 LATEDLVLMAERSGFASGISLDGLLRAVD 277
Cdd:PRK14041  239 PPFESMYYAFRENGKETDFDRKALKFLVE 267
PRK09282 PRK09282
pyruvate carboxylase subunit B; Validated
171-272 2.92e-04

pyruvate carboxylase subunit B; Validated


Pssm-ID: 236449 [Multi-domain]  Cd Length: 592  Bit Score: 42.14  E-value: 2.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 171 DEIVIADTIGSAAPGEVKTRLRALRDVAPLeRLAVHFHDTRGMGVANAWAALEAGVRRFDASVGgiggcPFAPGAAgNLA 250
Cdd:PRK09282  169 DSICIKDMAGLLTPYAAYELVKALKEEVDL-PVQLHSHCTSGLAPMTYLKAVEAGVDIIDTAIS-----PLAFGTS-QPP 241
                          90       100
                  ....*....|....*....|..
gi 1837855995 251 TEDLVLMAERSGFASGISLDGL 272
Cdd:PRK09282  242 TESMVAALKGTPYDTGLDLELL 263
PRK14040 PRK14040
oxaloacetate decarboxylase subunit alpha;
171-272 7.81e-04

oxaloacetate decarboxylase subunit alpha;


Pssm-ID: 237592 [Multi-domain]  Cd Length: 593  Bit Score: 41.07  E-value: 7.81e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 171 DEIVIADTIGSAAPG---EVKTRLRALRDVapleRLAVHFHDTRGMGVANAWAALEAGVRRFDASVGGIGgcpfapGAAG 247
Cdd:PRK14040  170 DSLCIKDMAGLLKPYaayELVSRIKKRVDV----PLHLHCHATTGLSTATLLKAIEAGIDGVDTAISSMS------MTYG 239
                          90       100
                  ....*....|....*....|....*
gi 1837855995 248 NLATEDLVLMAERSGFASGISLDGL 272
Cdd:PRK14040  240 HSATETLVATLEGTERDTGLDILKL 264
PRK12330 PRK12330
methylmalonyl-CoA carboxytransferase subunit 5S;
171-277 9.90e-03

methylmalonyl-CoA carboxytransferase subunit 5S;


Pssm-ID: 183445 [Multi-domain]  Cd Length: 499  Bit Score: 37.43  E-value: 9.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1837855995 171 DEIVIADTIGSAAPGEVKTRLRALRDV-APLERLAVHFHDTRGMGVANAWAALEAGVRRFDASVGGIGGCPfapgaaGNL 249
Cdd:PRK12330  170 DSICIKDMAALLKPQPAYDIVKGIKEAcGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISSMSLGP------GHN 243
                          90       100
                  ....*....|....*....|....*...
gi 1837855995 250 ATEDLVLMAERSGFASGISLDGLLRAVD 277
Cdd:PRK12330  244 PTESLVEMLEGTGYTTKLDMDRLLKIRD 271
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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