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Conserved domains on  [gi|1858859248|gb|QKU81559|]
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flagellar hook protein FlgE [Vibrio cholerae]

Protein Classification

flagellar hook protein FlgE( domain architecture ID 11481483)

flagellar hook protein FlgE functions as a nano-sized universal joint, which is essential for dynamic and efficient bacterial motility and taxis

CATH:  2.60.98.20
Gene Ontology:  GO:0071973
SCOP:  4003129

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flgE PRK05682
flagellar hook protein FlgE; Validated
 1-434 1.10e-161

flagellar hook protein FlgE; Validated


:

Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 461.61  E-value: 1.10e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   1 MSYVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNaKTTPGQGVQAAKVAQQFHEGSSIYTNNPLD 80
Cdd:PRK05682    2 SFNTAVSGLNAASNRLDVIGNNIANANTTGFKSSRAEFADLYANSAGTN-PTQVGSGVKVAGVAQQFSQGSITSTGNSLD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248  81 LRIAGTGFFAVAKDrlvpQQNELTRNGAFHLDKNSFMVTANDEFLLGYEVNPDTG--DVLSYEPKPINIPPQFGKPKQTA 158
Cdd:PRK05682   81 LAISGNGFFVVSNG----GNGFYTRAGAFKLDKNGYLVNAAGYYLQGYPADADGGtpPTVGAGLVPLNIPTTALAPKATT 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 159 NIDLGANLPANGDLKdpalfdITDPETYNRTTSSTIYDSMGQPYKLTTYYLKdmNQANTWQTYYTVTDKTGEKPinvvgg 238
Cdd:PRK05682  157 SGTFQGNLPSTAAFD------PTDPDTYNHSTSLTVYDSLGNSHTLDVYFVK--TGDNTWEVYVYDDGKPVSTT------ 222

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 239 daasPTGHVGHTMRFNNDGTLASlnngqpiVTEPLGGGANPVDLNGADVNQTLSFKLDTATQFAAPFELTKFDQDGATTG 318
Cdd:PRK05682  223 ----ATGTGTTTLTFDSNGALTT-------TTSPTTFNITGGATNGADGGQTITLDLSGSTQYASGFTVSATTQDGYAPG 291

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 319 FLTKIDFDENGSVLATYSNGINTTLGRVALVRVANEQGLDKKGGTQWDATQFSGAKIWGESNKGSFGSISNGSLEQSNID 398
Cdd:PRK05682  292 TLTGYSIDDDGTVTAVYSNGQTKPLGQIALANFANPDGLTKVGGNVWSATAASGVALIGTAGSGGFGTIQSGALESSNVD 371

                         410       420       430
                  ....*....|....*....|....*....|....*.
gi 1858859248 399 MTQELVDLISAQRNFQANSRALEVHNGLQQNILQIR 434
Cdd:PRK05682  372 LSTELVNMIVAQRNYQANAKTIKTQDQLLQTLVNLR 407
 
Name Accession Description Interval E-value
flgE PRK05682
flagellar hook protein FlgE; Validated
 1-434 1.10e-161

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 461.61  E-value: 1.10e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   1 MSYVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNaKTTPGQGVQAAKVAQQFHEGSSIYTNNPLD 80
Cdd:PRK05682    2 SFNTAVSGLNAASNRLDVIGNNIANANTTGFKSSRAEFADLYANSAGTN-PTQVGSGVKVAGVAQQFSQGSITSTGNSLD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248  81 LRIAGTGFFAVAKDrlvpQQNELTRNGAFHLDKNSFMVTANDEFLLGYEVNPDTG--DVLSYEPKPINIPPQFGKPKQTA 158
Cdd:PRK05682   81 LAISGNGFFVVSNG----GNGFYTRAGAFKLDKNGYLVNAAGYYLQGYPADADGGtpPTVGAGLVPLNIPTTALAPKATT 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 159 NIDLGANLPANGDLKdpalfdITDPETYNRTTSSTIYDSMGQPYKLTTYYLKdmNQANTWQTYYTVTDKTGEKPinvvgg 238
Cdd:PRK05682  157 SGTFQGNLPSTAAFD------PTDPDTYNHSTSLTVYDSLGNSHTLDVYFVK--TGDNTWEVYVYDDGKPVSTT------ 222

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 239 daasPTGHVGHTMRFNNDGTLASlnngqpiVTEPLGGGANPVDLNGADVNQTLSFKLDTATQFAAPFELTKFDQDGATTG 318
Cdd:PRK05682  223 ----ATGTGTTTLTFDSNGALTT-------TTSPTTFNITGGATNGADGGQTITLDLSGSTQYASGFTVSATTQDGYAPG 291

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 319 FLTKIDFDENGSVLATYSNGINTTLGRVALVRVANEQGLDKKGGTQWDATQFSGAKIWGESNKGSFGSISNGSLEQSNID 398
Cdd:PRK05682  292 TLTGYSIDDDGTVTAVYSNGQTKPLGQIALANFANPDGLTKVGGNVWSATAASGVALIGTAGSGGFGTIQSGALESSNVD 371

                         410       420       430
                  ....*....|....*....|....*....|....*.
gi 1858859248 399 MTQELVDLISAQRNFQANSRALEVHNGLQQNILQIR 434
Cdd:PRK05682  372 LSTELVNMIVAQRNYQANAKTIKTQDQLLQTLVNLR 407
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
1-434 3.02e-143

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 414.95  E-value: 3.02e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   1 MS-YVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAKVAQQFHEGSSIYTNNPL 79
Cdd:COG1749     3 MSfNTGVSGLNAASTALDVIGNNIANSNTVGFKSSRAEFADLVAQSLSGANPTQVGGGVRVASVAQIFTQGSLQSTGNAL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248  80 DLRIAGTGFFAVAKDrlvPQQNELTRNGAFHLDKNSFMVTANDEFLLGYEVNPD-TGDVLSYEPKPINIPPQFGKPKQTA 158
Cdd:COG1749    83 DLAISGNGFFVVSDS---GGQTYYTRAGSFSLDKDGYLVNSSGLYLQGYPADADgTIPDTGGGLEPIQIPTGQLPAKATT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 159 NIDLGANLPANGDLKDPAlFDITDPETYNRTTSSTIYDSMGQPYKLTTYYLKDmnQANTWQTYYTVTDKtgekpiNVVGG 238
Cdd:COG1749   160 KVTLGGNLPADATVPTAP-FDPTDPTTYNFSTSVTVYDSLGNSHTLTLYFTKT--GANTWTVYVTVDGA------DVTGG 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 239 DAASPTGhvghTMRFNNDGTLASLNNGQPI-VTeplggganpVDLNGADvNQTLSFKLDTATQFAAPFELTKFDQDGATT 317
Cdd:COG1749   231 TGATGTG----TLTFDSNGKLTSPTSGGPGtLT---------LTVNGAA-PQTITLDLSGLTQYASSFSVTSLTQDGYAA 296

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 318 GFLTKIDFDENGSVLATYSNGINTTLGRVALVRVANEQGLDKKGGTQWDATQFSGAKIWGESNKGSFGSISNGSLEQSNI 397
Cdd:COG1749   297 GTLTGVSIDDDGVVTATYSNGQTRPLGQIALATFANPQGLQKLGGNLWAETANSGEPLLGTAGTGGLGSIQSGALESSNV 376

                         410       420       430
                  ....*....|....*....|....*....|....*..
gi 1858859248 398 DMTQELVDLISAQRNFQANSRALEVHNGLQQNILQIR 434
Cdd:COG1749   377 DLAEELVNMIVAQRAYQANAKVITTSDEMLQTLVNLK 413
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 1-416 1.26e-50

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 170.90  E-value: 1.26e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   1 MSYVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNakTTPGQGVQAAKVAQQFHEGSSIYTNNPLD 80
Cdd:TIGR03506   2 ALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSVSGS--GQVGGGVRTSGVATDFSQGSLQSTGNSLD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248  81 LRIAGTGFFAVAKdrlvPQQNE-LTRNGAFHLDKNSFMVTANdefllGYEVNPDTGDvlsyepkPINIPPQFgkpkqtan 159
Cdd:TIGR03506  80 LAISGDGFFVVQT----PDGSEaYTRAGSFKLDADGYLVTSD-----GYPLLDWGGG-------PITLPPDA-------- 135

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 160 idlganlpangdlkdpalfditdpetynrttsstiydsmgqpyklttyylkdmnqantwqtyytvtdktgekpinvvggd 239
Cdd:TIGR03506     --------------------------------------------------------------------------------

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 240 aasptghvghtmrfnndgtlaslnngqpivteplggganpvdlngadvnqtlsfkldtatqfaapfeltkfdqdgattgf 319
Cdd:TIGR03506     --------------------------------------------------------------------------------

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 320 lTKIDFDENGSVLATYSNGINTTLGRVALVRVANEQGLDKKGGTQWDATQFSGAKIWGESNKGSFGSISNGSLEQSNIDM 399
Cdd:TIGR03506 136 -GSVSIGEDGTVSATYSNGQTVELGQIALANFPNPDGLRKEGGNLYSATPGSGAALVGAPGTGGFGTLVSGALEGSNVDL 214

                         410
                  ....*....|....*..
gi 1858859248 400 TQELVDLISAQRNFQAN 416
Cdd:TIGR03506 215 AEELVNMISAQRAYQAN 231
FlaE pfam07559
Flagellar basal body protein FlaE; This family consists of several bacterial FlaE flagellar ...
 187-314 3.66e-16

Flagellar basal body protein FlaE; This family consists of several bacterial FlaE flagellar proteins. These proteins are part of the flageller basal body rod complex.


Pssm-ID: 429537 [Multi-domain]  Cd Length: 94  Bit Score: 73.59  E-value: 3.66e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 187 NRTTSSTIYDSMGQPYKLTTYYLKDMNQANTWQTYYTVTDKTGekPINVVGGDAASPTGHVGHTMRFNndgtlaslnngq 266
Cdd:pfam07559   1 NYSTSVTVYDSLGNSHTLTVYFVKTATGPNTWEVYVTVDGEVG--DGDGTAGTASTAGGLMTGTLTFD------------ 66

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1858859248 267 pivteplggganpvdlngadvNQTLSFKLDTATQFAAPFELTKFDQDG 314
Cdd:pfam07559  67 ---------------------SITLDFGLTGSTQYASAFSVTSLSQDG 93
 
Name Accession Description Interval E-value
flgE PRK05682
flagellar hook protein FlgE; Validated
 1-434 1.10e-161

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 461.61  E-value: 1.10e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   1 MSYVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNaKTTPGQGVQAAKVAQQFHEGSSIYTNNPLD 80
Cdd:PRK05682    2 SFNTAVSGLNAASNRLDVIGNNIANANTTGFKSSRAEFADLYANSAGTN-PTQVGSGVKVAGVAQQFSQGSITSTGNSLD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248  81 LRIAGTGFFAVAKDrlvpQQNELTRNGAFHLDKNSFMVTANDEFLLGYEVNPDTG--DVLSYEPKPINIPPQFGKPKQTA 158
Cdd:PRK05682   81 LAISGNGFFVVSNG----GNGFYTRAGAFKLDKNGYLVNAAGYYLQGYPADADGGtpPTVGAGLVPLNIPTTALAPKATT 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 159 NIDLGANLPANGDLKdpalfdITDPETYNRTTSSTIYDSMGQPYKLTTYYLKdmNQANTWQTYYTVTDKTGEKPinvvgg 238
Cdd:PRK05682  157 SGTFQGNLPSTAAFD------PTDPDTYNHSTSLTVYDSLGNSHTLDVYFVK--TGDNTWEVYVYDDGKPVSTT------ 222

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 239 daasPTGHVGHTMRFNNDGTLASlnngqpiVTEPLGGGANPVDLNGADVNQTLSFKLDTATQFAAPFELTKFDQDGATTG 318
Cdd:PRK05682  223 ----ATGTGTTTLTFDSNGALTT-------TTSPTTFNITGGATNGADGGQTITLDLSGSTQYASGFTVSATTQDGYAPG 291

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 319 FLTKIDFDENGSVLATYSNGINTTLGRVALVRVANEQGLDKKGGTQWDATQFSGAKIWGESNKGSFGSISNGSLEQSNID 398
Cdd:PRK05682  292 TLTGYSIDDDGTVTAVYSNGQTKPLGQIALANFANPDGLTKVGGNVWSATAASGVALIGTAGSGGFGTIQSGALESSNVD 371

                         410       420       430
                  ....*....|....*....|....*....|....*.
gi 1858859248 399 MTQELVDLISAQRNFQANSRALEVHNGLQQNILQIR 434
Cdd:PRK05682  372 LSTELVNMIVAQRNYQANAKTIKTQDQLLQTLVNLR 407
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
1-434 3.02e-143

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 414.95  E-value: 3.02e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   1 MS-YVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAKVAQQFHEGSSIYTNNPL 79
Cdd:COG1749     3 MSfNTGVSGLNAASTALDVIGNNIANSNTVGFKSSRAEFADLVAQSLSGANPTQVGGGVRVASVAQIFTQGSLQSTGNAL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248  80 DLRIAGTGFFAVAKDrlvPQQNELTRNGAFHLDKNSFMVTANDEFLLGYEVNPD-TGDVLSYEPKPINIPPQFGKPKQTA 158
Cdd:COG1749    83 DLAISGNGFFVVSDS---GGQTYYTRAGSFSLDKDGYLVNSSGLYLQGYPADADgTIPDTGGGLEPIQIPTGQLPAKATT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 159 NIDLGANLPANGDLKDPAlFDITDPETYNRTTSSTIYDSMGQPYKLTTYYLKDmnQANTWQTYYTVTDKtgekpiNVVGG 238
Cdd:COG1749   160 KVTLGGNLPADATVPTAP-FDPTDPTTYNFSTSVTVYDSLGNSHTLTLYFTKT--GANTWTVYVTVDGA------DVTGG 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 239 DAASPTGhvghTMRFNNDGTLASLNNGQPI-VTeplggganpVDLNGADvNQTLSFKLDTATQFAAPFELTKFDQDGATT 317
Cdd:COG1749   231 TGATGTG----TLTFDSNGKLTSPTSGGPGtLT---------LTVNGAA-PQTITLDLSGLTQYASSFSVTSLTQDGYAA 296

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 318 GFLTKIDFDENGSVLATYSNGINTTLGRVALVRVANEQGLDKKGGTQWDATQFSGAKIWGESNKGSFGSISNGSLEQSNI 397
Cdd:COG1749   297 GTLTGVSIDDDGVVTATYSNGQTRPLGQIALATFANPQGLQKLGGNLWAETANSGEPLLGTAGTGGLGSIQSGALESSNV 376

                         410       420       430
                  ....*....|....*....|....*....|....*..
gi 1858859248 398 DMTQELVDLISAQRNFQANSRALEVHNGLQQNILQIR 434
Cdd:COG1749   377 DLAEELVNMIVAQRAYQANAKVITTSDEMLQTLVNLK 413
flgE PRK06803
flagellar basal body protein FlaE;
1-432 8.61e-86

flagellar basal body protein FlaE;


Pssm-ID: 235862 [Multi-domain]  Cd Length: 402  Bit Score: 267.79  E-value: 8.61e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   1 MSY-VSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSlftnaktTPGqGVQAAKVAQQFHEGSSI-YTNNP 78
Cdd:PRK06803    1 MSFnIALSGLNATTQQLNTISNNIANSSTKGFKGSRTEFSSIYNGG-------QPG-GVEVSSVSQNFSKDGSLtYTGRG 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248  79 LDLRIAGTGFFaVAKDRLvpQQNELTRNGAFHLDKNSFMVTANDEFLLGYEVNpDTGDVLSYEPKPINIPPQFGKPKQTA 158
Cdd:PRK06803   73 LDLAISGGGFF-VLKESD--GDTAYTRAGMFRSDVDGYLTDPQGMKLQGYPVD-AAGNLQTGNVSDLQVQTASLPAKATD 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 159 NIDLGANLPANGDLKDPAL--FDITDPETYNRTTSSTIYDSMGQPYKLTTYYLKdmNQANTWQTYYTVtdktgekpinvv 236
Cdd:PRK06803  149 QLDFVANLDASVTPIDPSVspFDPTDEKSYNSSTTSTVYDSLGNEHAVTQYFVK--TATNEWAVHYTV------------ 214

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 237 ggDAASPTGHVGHTMRFNNDGTLASLNNgqpiVTEPLGGGANPvdlNGADvNQTLSFKLDTATQFAAPFELTKFDQDGAT 316
Cdd:PRK06803  215 --DGGDVTPPLGHTLQFDDTGALIPGKG----STINLHGTFNP---AGAS-DYDIDIDYTGSTQYAADFNNSRNKSNGYT 284

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 317 TGFLTKIDFDENGSVLATYSNGINTTLGRVALVRVANEQGLDKKGGTQWDATQFSGAKIWGESNKGSFGSISNGSLEQSN 396
Cdd:PRK06803  285 SGELNGVRIEDNGMVYATYTNGQRQLQGQVVLANFANPNGLVTVSNTAWSASNKSGAPILGTPGTGTLGSLTSGALEGSN 364

                         410       420       430
                  ....*....|....*....|....*....|....*.
gi 1858859248 397 IDMTQELVDLISAQRNFQANSRALEVHNGLQQNILQ 432
Cdd:PRK06803  365 VDITAELVGLMTAQRNYQANAKVISTNDTMQQALFN 400
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 1-416 1.26e-50

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 170.90  E-value: 1.26e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   1 MSYVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNakTTPGQGVQAAKVAQQFHEGSSIYTNNPLD 80
Cdd:TIGR03506   2 ALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSVSGS--GQVGGGVRTSGVATDFSQGSLQSTGNSLD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248  81 LRIAGTGFFAVAKdrlvPQQNE-LTRNGAFHLDKNSFMVTANdefllGYEVNPDTGDvlsyepkPINIPPQFgkpkqtan 159
Cdd:TIGR03506  80 LAISGDGFFVVQT----PDGSEaYTRAGSFKLDADGYLVTSD-----GYPLLDWGGG-------PITLPPDA-------- 135

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 160 idlganlpangdlkdpalfditdpetynrttsstiydsmgqpyklttyylkdmnqantwqtyytvtdktgekpinvvggd 239
Cdd:TIGR03506     --------------------------------------------------------------------------------

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 240 aasptghvghtmrfnndgtlaslnngqpivteplggganpvdlngadvnqtlsfkldtatqfaapfeltkfdqdgattgf 319
Cdd:TIGR03506     --------------------------------------------------------------------------------

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 320 lTKIDFDENGSVLATYSNGINTTLGRVALVRVANEQGLDKKGGTQWDATQFSGAKIWGESNKGSFGSISNGSLEQSNIDM 399
Cdd:TIGR03506 136 -GSVSIGEDGTVSATYSNGQTVELGQIALANFPNPDGLRKEGGNLYSATPGSGAALVGAPGTGGFGTLVSGALEGSNVDL 214

                         410
                  ....*....|....*..
gi 1858859248 400 TQELVDLISAQRNFQAN 416
Cdd:TIGR03506 215 AEELVNMISAQRAYQAN 231
flgE PRK12637
flagellar hook protein FlgE; Provisional
 5-434 1.13e-40

flagellar hook protein FlgE; Provisional


Pssm-ID: 183641 [Multi-domain]  Cd Length: 473  Bit Score: 151.06  E-value: 1.13e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   5 SLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFtnakttpGQGVQAAKVAQQFHEGSSIYTNNPLDLRI- 83
Cdd:PRK12637    6 GLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRV-------GLGVKVSAINQRFTVGNISTTGGEYDMAId 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248  84 AGTGFFavakdRLVPQQNEL--TRNGAFHLDKNSFMVTANDEFLLGYEVNpdtgdVLSYEPKPINIPPQFGKPKQTANID 161
Cdd:PRK12637   79 GGKGFF-----RLTDQSGGVfySRNGEFMVDKNFYIVNAQGFRLTGYPAG-----GVGAQPVDLQLPQGNIAPQATSTAG 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 162 LGANLPANGDLKDP------------------------------------------------------------------ 175
Cdd:PRK12637  149 LQTNLNANAKVIDPndtpavdgtveldgttyrftnaggtfawvapapldgtynggdiviaggavtgdlasqpgyqpykpl 228

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 176 ---ALFDITDPETYNRTTSSTIYDSMGQPYKLTTYYLKD--MNQANTWQTYYTVTDKtgekPINVVGGdaasptghVGHT 250
Cdd:PRK12637  229 vagIPFDPTNPLSYTDQVPTTVYDSLGNSHQMIQYFAKRpaVGTESVYEVYYVLDGQ----PMQVNGG--------ASQT 296

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 251 MRFNNDGTLASLNNGQPIVTEPLGGGANPVDlngadvNQTLSFKLDTATQFAAPFElTKFDQDGATTGFLTKIDFDENGS 330
Cdd:PRK12637  297 LNFDTAGNLLNQPPTAQVTFANPGGNAAPAD------PLAITVSYNGVTQYGSDFA-PKVVQNGYSSGEFMGLSVGKDGS 369

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 331 VLATYSNGINTTLGRVALVRVANEQGLDKKGGTQWDATQFSGAKIWGESNKGSFGSISNGSLEQSNIDMTQELVDLISAQ 410
Cdd:PRK12637  370 LVAKYTNGETQTIGTLVLANFNNVQGLQPVGNNAWVETSESGQATLGQPGTNGLATIAGQALEASNVDMSRELVNMIVAQ 449

                         490       500
                  ....*....|....*....|....
gi 1858859248 411 RNFQANSRALEVHNGLQQNILQIR 434
Cdd:PRK12637  450 RTYQANAQTIKTQDEVMQVLMNMR 473
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
3-434 3.50e-40

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 144.19  E-value: 3.50e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   3 YVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSL------FTNAKTTP-----GQGVQAAKVAQQFHEGS 71
Cdd:COG4786     2 YTAASGMLAQQTRLDVISNNLANVNTTGFKRDRAVFEDLLYQLIrrpgapSSQGTQTPvglqlGTGVRVAATQTDFTQGS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248  72 SIYTNNPLDLRIAGTGFFAVakdrLVPQQNE-LTRNGAFHLDKNSFMVTANdefllGYEVNPDTGdvlsyepkPINIPPQ 150
Cdd:COG4786    82 LQQTGNPLDLAIEGDGFFQV----QTPDGETaYTRDGSFQLDADGQLVTSD-----GYPVLPENG--------PITIPED 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 151 Fgkpkqtanidlganlpangdlkdpalfditdpetynrttsstiydsmgqpyklttyylkdmnqantwqtyytvtdktge 230
Cdd:COG4786   145 A------------------------------------------------------------------------------- 145

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 231 kpinvvggdaasptghvghtmrfnndgtlaslnngqpivteplggganpvdlngadvnqtlsfkldtatqfaapfeltkf 310
Cdd:COG4786       --------------------------------------------------------------------------------

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 311 dqdgattgflTKIDFDENGSVLATYSNGINTTLGRVALVRVANEQGLDKKGGTQWDATQFSGAKIWGESNKGSFGSISNG 390
Cdd:COG4786   146 ----------TSITISEDGTVSVTLADGDGQQVGQLGLVDFANPAGLEKVGDNLFRETAASGAPIVGTPGEDGLGTLRQG 215

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1858859248 391 SLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQNILQIR 434
Cdd:COG4786   216 YLEGSNVDVVEEMVDMIEAQRAYEANSKVIQTADEMLGKANNLR 259
flgE PRK08425
flagellar hook protein FlgE; Validated
 189-434 4.14e-31

flagellar hook protein FlgE; Validated


Pssm-ID: 236263 [Multi-domain]  Cd Length: 731  Bit Score: 126.35  E-value: 4.14e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 189 TTSSTIYDSMGQPYKLTTYYLK---DMNQANTWQTYYTVTDktgekPINVVGGDAASPTGHVGHTMRFNNDGTLASLNng 265
Cdd:PRK08425  491 AASIDIYDSLGSKHTLRIEFYKsstTQDGGAEWNMIIIVPE-----PAEINGGSEGRPNNFEGGRLRFNNDGSLAGMN-- 563

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 266 qPIVtepLGGGANpvdlNGADVNQTLSFKLDTATQFAApfeLTKFD---------QDGATTGFLTKIDFDENGSVLATYS 336
Cdd:PRK08425  564 -PPT---LQFDPN----NGAAAPQRINLSFGTSGSFDG---LTSVDkisetyaieQDGYTAGDLMDIRFDSDGTILGAFT 632

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 337 NGINTTLGRVALVRVANEQGLDKKGGTQWDATQFSGAKIWGESNKGSFGSISNGSLEQSNIDMTQELVDLISAQRNFQAN 416
Cdd:PRK08425  633 NGRTFALAQVALANFANNAGLQAEGGNVFSQTANSGQAVIGAAGTGGRGSISGSKLEMSNVDLSRSLTQLIVIQRGFQAN 712

                         250
                  ....*....|....*...
gi 1858859248 417 SRALEVHNGLQQNILQIR 434
Cdd:PRK08425  713 SKTITTSDQMLNTLLQLK 730
flgE PRK05841
flagellar hook protein FlgE; Validated
 5-420 2.92e-28

flagellar hook protein FlgE; Validated


Pssm-ID: 235620 [Multi-domain]  Cd Length: 603  Bit Score: 117.25  E-value: 2.92e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   5 SLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSL-FTNAKTTPGQ----GVQAAKVAQQFHEGSSIYTNNPL 79
Cdd:PRK05841    8 AYSGIKTHQFGLDSLSNNIANVNTLGYRSNIPEFKTLFSSHLdALNAKSVVANdrnyGVTGSSNAISNKDGEYKPSDGEF 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248  80 DLRIAGTGFFAVAKDR-----------LVPQQNELTRNGAFHLDKNSFMVTANDEFLLGYEVNPDTGDVLSYEPK----- 143
Cdd:PRK05841   88 HMAYQGKGWFVVGPNKngsmtinkdgfSKKQDNYFTRDGSFARDADGYLVNPEGYYVYGIDLGKIKDGTLNSTARdeadi 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 144 ---------PINIPPQ-FGKPKQTANIDLGANLPAN-------------------------------------------- 169
Cdd:PRK05841  168 eklhgntlsPLQIPQDlTYQPVLTTKVGISVNLNPKdhlkgvqdfflndkgefikerflnqdinalanddnepidaitnr 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 170 ---------------------------------GDLKD----------------------PALFDITDPETYN------- 187
Cdd:PRK05841  248 klnitiqkedgkkedfvftygdaekgenqfktlGDLKKllkektgldlnlirsekgakspPLLLEIANPSQTPitfslsg 327

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 188 ------------------------------RTTSSTIYDSMGQPYKL-TTYYLKDMN-------QANTWQTYYTVTDKTG 229
Cdd:PRK05841  328 giadklglnangmelkkgisrdsvaikipsYSTEVEIYDKAGDKYLLqSEYYMTNSGdptssprKNQTWEVKSYIVDPKN 407

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 230 EKPINvvggdaaspTGHVGHTMRFNNDGTLASlnngQPiVTEPLGGGANPVDLNGADVNQTLSFKLDTATqfaapfeLTK 309
Cdd:PRK05841  408 KTPIN---------TDPTWEIVGFDATHKMKA----AP-MTLDFKGNKLTYSLDKSEDHDSSNLSYQDSK-------LLE 466

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 310 FDQDGATTGFLTKIDFDENGSVLATYSNGINTTLGRVALVRVANEQGLDKKGGTQWDATQ---------FSGAKI--WGE 378
Cdd:PRK05841  467 ASQDGKPRGILRDVRIDENGVISLAFSNGVVEPMGRIGIAAFTNDQGLRKVGGNLFEMQEgtingenrpLSGNPIlgWDE 546

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|..
gi 1858859248 379 SNKGSFGSISNGSLEQSNIDMTQELVDLISAQRNFQANSRAL 420
Cdd:PRK05841  547 EGKLKFGKVRHKYLETSNVDAGNALTNLILMQRGYSMNARAF 588
flgG PRK12693
flagellar basal body rod protein FlgG; Provisional
 3-132 1.27e-24

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183687 [Multi-domain]  Cd Length: 261  Bit Score: 102.25  E-value: 1.27e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   3 YVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDV-YSTSLFTNAKTT-----P-----GQGVQAAKVAQQFHEGS 71
Cdd:PRK12693    6 WIAKTGLDAQQTNIDVISNNLANVNTTGFKKSRAVFEDLlYQTIRQPGAQSSqnttlPsglqvGTGVRPVATQKIFTQGN 85

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1858859248  72 SIYTNNPLDLRIAGTGFFAVakdrLVPQQNEL-TRNGAFHLDKNSFMVTANdefllGYEVNP 132
Cdd:PRK12693   86 LQQTGNSLDVAIEGQGFFQV----QLPDGTIAyTRDGSFKLDQDGQLVTSG-----GYPLQP 138
flgG_G_neg TIGR02488
flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the ...
 3-434 1.15e-22

flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131541 [Multi-domain]  Cd Length: 259  Bit Score: 96.65  E-value: 1.15e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   3 YVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGD-VYSTSLFTNAKTTP-----------GQGVQAAKVAQQFHEG 70
Cdd:TIGR02488   3 WTAATGMNAQQTNMDVISNNLANVNTTGFKKDRAEFEDlLYQTERQPGAQSSEqqtilpvgvqvGLGVRVVATQKLFTQG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248  71 SSIYTNNPLDLRIAGTGFFAVakdrLVPQ-QNELTRNGAFHLDKNSFMVTANdefllGYEVNPdtgdvlsyepkPINIPP 149
Cdd:TIGR02488  83 SLQNTGNDLDLAIEGEGFFQV----LMPDgTTAYTRDGAFKINAEGQLVTSN-----GYPLQP-----------EITIPE 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 150 qfgkpkqtanidlganlpangdlkdpalfditdpetynrttsstiydsmgqpyklttyylkdmnqantwqtyytvtdktg 229
Cdd:TIGR02488     --------------------------------------------------------------------------------

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 230 ekpinvvggDAASPTghvghtmrFNNDGTLASLNNGQpivTEPlggganpvdlngadvnqtlsfkldtatqfaapfeltk 309
Cdd:TIGR02488 143 ---------NATSIT--------VGSDGEVSVRQGGQ---TEP------------------------------------- 165

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 310 fdqdgattgfltkidfdengsvlatysnginTTLGRVALVRVANEQGLDKKGGTQWDATQFSGAKIWGESNKGSFGSISN 389
Cdd:TIGR02488 166 -------------------------------QEVGQITLATFINPAGLEAVGENLFRETPASGPPQIGTPGLDGFGKLRQ 214

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*
gi 1858859248 390 GSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQNILQIR 434
Cdd:TIGR02488 215 GFLEASNVNVVQEMVDMITAQRAYEMNSKAIQASDQMLQTVSQLL 259
flgE PRK08425
flagellar hook protein FlgE; Validated
 7-268 6.12e-20

flagellar hook protein FlgE; Validated


Pssm-ID: 236263 [Multi-domain]  Cd Length: 731  Bit Score: 92.45  E-value: 6.12e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   7 SGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYS-TSLFTNAKT---------TPGQGVQAAKVAQQFHEGSSIYTN 76
Cdd:PRK08425   10 SGLQAHQIAMDVEGNNIANVNTTGFKYSRASFVDMLSqTKLIATAPKgglggqndmQIGLGVGVSSTTKIFSQGSIQNTD 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248  77 NPLDLRIAGTGFFAVAKDRlvPQQNELTRNGAFHLDKNSFMVTANDEFLLGYEVNPDTGDVLSYEP-KPINIPPQFGKP- 154
Cdd:PRK08425   90 KNTDLAIQGDGFFIVSPDG--GTTRNYTRDGDFKFDAQGNFVNNGGYVVQGWVSDTDTGTIDSTGPiQNIRIDPGMVMPa 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 155 KQTANIDLGANLPAnGDLKDpalfditdpetynrTTSSTIY--DSMGQPYKLTTyYLKDMNQANTWQTYytvtdkTGEKP 232
Cdd:PRK08425  168 RASTEVSIKANLNS-GRHIG--------------TQSAPIYalDSVHGWNDKTG-DTAKTNDDGINPFY------DSSKN 225

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1858859248 233 INVVGGDAASptghvghtmRFNNDGTLASLNNGQPI 268
Cdd:PRK08425  226 LAQVAEDMGV---------LFNADGDALNLREGQGI 252
flgG PRK12816
flagellar basal body rod protein FlgG; Reviewed
 3-133 8.78e-18

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183766 [Multi-domain]  Cd Length: 264  Bit Score: 82.93  E-value: 8.78e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   3 YVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGD-VYSTSLF-----TNAKTTP-----GQGVQAAKVAQQFHEGS 71
Cdd:PRK12816    6 WTAASGMNAQQFNIDTIANNLANVNTTGFKKIRAEFEDlIYQTQRRagtpaTEDTVTPlgvqvGHGVKVAATQRLFEQGS 85

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1858859248  72 SIYTNNPLDLRIAGTGFFAVakdrLVPQQN-ELTRNGAFHLDKNSFMVTANdefllGYEVNPD 133
Cdd:PRK12816   86 LQATGNKLDVAIEGEGFFKI----LMPDGTyAYTRDGSFKIDANGQLVTSN-----GYRLLPE 139
flgG PRK12636
flagellar basal body rod protein FlgG; Provisional
 3-418 1.65e-17

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183640 [Multi-domain]  Cd Length: 263  Bit Score: 82.11  E-value: 1.65e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   3 YVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSL-----------FTNAKTTpGQGVQAAKVAQQFHEGS 71
Cdd:PRK12636    6 YSGISGMKNFQTKLDVIGNNIANVNTYGFKKSRVTFKDMVSQTIsgasgptanrgGVNSKQV-GLGSQLGAIDTIHTQGS 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248  72 SIYTNNPLDLRIAGTGFFavakdRLVPQQNEL-TRNGAFHLDKNSFMVTANDEFLLGYEVNpdtgdvlsyepkPINIPpq 150
Cdd:PRK12636   85 LQTTGRPLDLAISGDGFF-----RVGDGDNTAyTRAGNFYLDNEGNIVNADGLYLLGMNGG------------RIQIP-- 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 151 fgkpkqtanidlganlpangdlkdpalfdiTDPETYnrttsstiydSMGQpyklttyylkdmnqantwqtyytvtdktge 230
Cdd:PRK12636  146 ------------------------------TDAQSF----------SIGA------------------------------ 155

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 231 kpinvvggdaasptghvghtmrfnndgtlaslnngqpivteplggganpvdlngadvnqtlsfkldtatqfaapfeltkf 310
Cdd:PRK12636      --------------------------------------------------------------------------------

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 311 dqdgattgfltkidfdeNGSVLATYSNGINTTLGRVALVRVANEQGLDKKGGTQWDATQFSGAKIWGESNKGSFGSISNG 390
Cdd:PRK12636  156 -----------------DGTVSYVDAGGELQTAGQIGLATFANPDGLEKAGDNLYRETLNSGTPSAVVPGEGGTGKIVSG 218

                         410       420
                  ....*....|....*....|....*...
gi 1858859248 391 SLEQSNIDMTQELVDLISAQRNFQANSR 418
Cdd:PRK12636  219 ALEMSNVDLAEEFTEMIVAQRGFQANTR 246
flgE_epsilon TIGR02489
flagellar hook protein FlgE, epsilon proteobacterial; Members of this family are flagellar ...
 6-259 1.07e-16

flagellar hook protein FlgE, epsilon proteobacterial; Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the Proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.


Pssm-ID: 131542 [Multi-domain]  Cd Length: 719  Bit Score: 82.30  E-value: 1.07e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   6 LSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSlfTNAKTTP------------GQGVQAAKVAQQFHEGSSI 73
Cdd:TIGR02489   9 VSGMQAHQVALDVEGNNIANVNTTGFKYSRADFGDMLSQT--VKIATSPydglggqndlsiGLGVSISSTTKIFSQGSVQ 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248  74 YTNNPLDLRIAGTGFFAVAKDRlvPQQNELTRNGAFHLDKNSFMVTANDEFLLGYEVNPDTGDVLSYE------------ 141
Cdd:TIGR02489  87 TTNSKTDVAINGDGFFIVSDDG--GLTNYYTRDGAFKFDAYGNFVNNSGYIVQGWNRPLEAAESGTMSdwddqtvdstrp 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 142 PKPINIPPQFGKP-KQTANIDLGANLPAN---GDLKDPALFDITDPETYNRTTSstIYDS----------MGQPYKLTTY 207
Cdd:TIGR02489 165 PQNIFIDPGMVIPaAATTEVALKANLNAGlniDTSSNLYALDSTHQTAADGTTA--FYDSsgevtqkgedAGVLFNASGT 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1858859248 208 YLKDMNQANTWQTYYTVTDKTgekpiNVVGGDAASPTGHVGHTMRFNNDGTL 259
Cdd:TIGR02489 243 ALNLREGQGIWVSYADAKYST-----NKVVVSAFDTITLNGVRIQFANISNI 289
FlaE pfam07559
Flagellar basal body protein FlaE; This family consists of several bacterial FlaE flagellar ...
 187-314 3.66e-16

Flagellar basal body protein FlaE; This family consists of several bacterial FlaE flagellar proteins. These proteins are part of the flageller basal body rod complex.


Pssm-ID: 429537 [Multi-domain]  Cd Length: 94  Bit Score: 73.59  E-value: 3.66e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 187 NRTTSSTIYDSMGQPYKLTTYYLKDMNQANTWQTYYTVTDKTGekPINVVGGDAASPTGHVGHTMRFNndgtlaslnngq 266
Cdd:pfam07559   1 NYSTSVTVYDSLGNSHTLTVYFVKTATGPNTWEVYVTVDGEVG--DGDGTAGTASTAGGLMTGTLTFD------------ 66

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1858859248 267 pivteplggganpvdlngadvNQTLSFKLDTATQFAAPFELTKFDQDG 314
Cdd:pfam07559  67 ---------------------SITLDFGLTGSTQYASAFSVTSLSQDG 93
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 3-150 2.71e-15

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 75.28  E-value: 2.71e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   3 YVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAE------FGDVYSTSLFTNAkTTPGqgvqaakvaQQFHEGSSIYTN 76
Cdd:PRK12640    6 YTAMSGASQNLNQQAVVANNLANASTPGFRADLAQaravpvFGEGLPTRVFALA-STPG---------ADFSPGPLQTTG 75

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1858859248  77 NPLDLRIAGTGFFAVakdrLVPQQNE-LTRNGAFHLDKNSFMVTANDEFLLGyevnpDTGdvlsyepkPINIPPQ 150
Cdd:PRK12640   76 RPLDVALQGDGWLAV----QAPDGSEaYTRNGSLQVDANGQLRTANGLPVLG-----DGG--------PIAVPPG 133
flgG PRK12692
flagellar basal body rod protein FlgG; Reviewed
 4-132 6.69e-14

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 139158 [Multi-domain]  Cd Length: 262  Bit Score: 71.42  E-value: 6.69e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   4 VSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDV-YSTSLFTNAKTTPGQ-----------GVQAAKVAQQFHEGS 71
Cdd:PRK12692    6 IAATGMSAQQLNLEVIANNIANLNTTGFKGARAEFTDLlYQAERQQGVPNQAGQeavpegamlglGVRAAAIRNLHRQGS 85

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1858859248  72 SIYTNNPLDLRIAGTGFFAVakdrLVPQ-QNELTRNGAFHLDKNSFMVTANdefllGYEVNP 132
Cdd:PRK12692   86 LAQTGNQLDLAVNGRGYFQV----TSPNgEIQYTRAGSFNKNAAGQLVTME-----GYAVDP 138
flgG PRK12692
flagellar basal body rod protein FlgG; Reviewed
 272-430 8.30e-14

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 139158 [Multi-domain]  Cd Length: 262  Bit Score: 71.03  E-value: 8.30e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 272 PLGGGANPVDL--NGADVNQTLSFKLDTATQFAAPFELTKFDQDGATTGFL-----------TKIDFDENGSVLATYSNG 338
Cdd:PRK12692   85 SLAQTGNQLDLavNGRGYFQVTSPNGEIQYTRAGSFNKNAAGQLVTMEGYAvdpailipqntTQVTINESGQVFAKIDGQ 164

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 339 IN-TTLGRVALVRVANEQGLDKKGGTQWDATQFSGAKIWGESNKGSFGSISNGSLEQSNIDMTQELVDLISAQRNFQANS 417
Cdd:PRK12692  165 VApQNLGQLTLANFANESGLEPLGNGLYRETPASGAPVVGNPGDVGFGKIQQGYLEGSNVDPVKEITSLITAQRAFEMNS 244

                         170
                  ....*....|...
gi 1858859248 418 RALEVHNGLQQNI 430
Cdd:PRK12692  245 KVIQAADEMAGTV 257
flgF PRK12689
flagellar basal-body rod protein FlgF;
1-149 2.26e-13

flagellar basal-body rod protein FlgF;


Pssm-ID: 183684 [Multi-domain]  Cd Length: 253  Bit Score: 69.78  E-value: 2.26e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   1 MSYVSLSGLSAaQM----DLNTTSNNIANANTFGFKESRAEFGDVYSTSlfTNAKTTPGQG-----VQAAKVAQQFHEGS 71
Cdd:PRK12689    1 MQNALLVGLSR-QMalerQLDVVANNVANVNTNGFKARSSLFQEYLMPG--AHEDNFQRPDrrvsyVQDRGTPLDLSQGP 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248  72 SIYTNNPLDLRIAGTGFFAVAkdrlVPQQNELTRNGAFHLDKNSFMVTANDEFLLGyevnpdTGDVLSYEP--KPINIPP 149
Cdd:PRK12689   78 LEQTKNPLDVAIDGDAFLAVQ----TPQGERYTRDGALEINAQGQLVTSDGYPVLG------TGGPITFQPtdTGIAISP 147
flgF PRK12690
flagellar hook-basal body complex protein;
2-150 3.69e-13

flagellar hook-basal body complex protein;


Pssm-ID: 183685 [Multi-domain]  Cd Length: 238  Bit Score: 68.94  E-value: 3.69e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   2 SYVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAKVAQQfheGSSIYTNNPLDL 81
Cdd:PRK12690    5 GYTTLTRQSGLMREMQVVANNIANASTTGFRREGLVFSEYVKSLDSGEASLSMARASGRQTDLEQ---GGLTQTGGQFDF 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1858859248  82 RIAGTGFFAVAkdrlVPQQNELTRNGAFhldknsfmvTANDEFLLgyeVNPDTGDVLSYEPKPINIPPQ 150
Cdd:PRK12690   82 AIEGEGFFMVE----TPQGERLTRAGSF---------TPNAEGEL---VDPDGNRLLDAGGAPIFIPPD 134
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 355-433 1.11e-12

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 63.05  E-value: 1.11e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1858859248 355 QGLDKKGGTQWDATQfsGAKIWGEsnkGSFGSISNGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQNILQI 433
Cdd:pfam06429   1 AGLEKGGDNLFRETD--GAPILGA---GADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
flgF PRK12642
flagellar basal-body rod protein FlgF;
3-159 3.35e-12

flagellar basal-body rod protein FlgF;


Pssm-ID: 237153 [Multi-domain]  Cd Length: 241  Bit Score: 65.84  E-value: 3.35e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   3 YVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYStslftNAKTTPGQGVQAAKVAQQFHEGSSIYTNNPLDLR 82
Cdd:PRK12642    6 YVALSSQMALEKRLDTIADNVANVNTVGFRATEVKFDTVVS-----DTASKKVAFVSQGKSYLSTEAGPLTKTGNPLDFA 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1858859248  83 IAGTGFFAVAkdrlVPQQNELTRNGAFHLDKNSFMVTANdefllGYEVnPDTGDVlsyepkPINIPPQFGKPKQTAN 159
Cdd:PRK12642   81 VKGDAWFSFD----TPAGQVYTRDGRFTMTSTGELVSVT-----GYPV-LDAGGA------PIQLNPGGGEPTIGAD 141
flgG PRK12817
flagellar basal body rod protein FlgG; Reviewed
 3-146 1.21e-11

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183767 [Multi-domain]  Cd Length: 260  Bit Score: 64.71  E-value: 1.21e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   3 YVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLftNAKTTP---------GQGVQAAKVAQQFHEGSSI 73
Cdd:PRK12817    6 WNSKSGMNAQQEKLDSISNNLANVNTTGYKREDVSFSDLVYETL--DRKGYPtndkpeiitGTGVKATNWIRDNQQGNLL 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1858859248  74 YTNNPLDLRIAGTGFFAVAKdrlvPQQNEL-TRNGAFHLDKNSFMVTANDEFLlgyEVNPDTGDVLSYEPKPIN 146
Cdd:PRK12817   84 TTGNKTDLAIDGEGFFRVIM----ADGTYAyTRAGNFNIDSNGMLVDDNGNRL---EIQLEAGVGINNRNTGFD 150
flgG PRK12818
flagellar basal body rod protein FlgG; Reviewed
 3-135 4.53e-11

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183768 [Multi-domain]  Cd Length: 256  Bit Score: 62.79  E-value: 4.53e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   3 YVSLSGLSAAQMDLNTTSNNIANANTFGFKE---SRAEFGDVystsLFTNAKTTPGQ------------GVQAAKVAQQF 67
Cdd:PRK12818    6 YTAVSGMITLEAKQDVITNNLANVNTVGYKSdnlAFKSFEDV----LIENYDKKVGNknvkniigglsmGSKIDEVNTLF 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1858859248  68 HEGSSIYTNNPLDLRIAGTGFFAVAKDrlvPQQNELTRNGAFHLDKNSFMVTANDEFLLGyeVNPDTG 135
Cdd:PRK12818   82 TQGIIKSTDKPTDFAIQGRGFFTVERN---AGNNYYTRDGHFHVDTQGYLVNDSGYYVLG--RNNATG 144
flgF TIGR02490
flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several ...
 322-414 2.04e-10

flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274160 [Multi-domain]  Cd Length: 89  Bit Score: 56.87  E-value: 2.04e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248 322 KIDFDENGSVlatYSNGIntTLGRVALVRVANEQGLDKKGGTQWDATQFsgakiwGESNKGSFGSISNGSLEQSNIDMTQ 401
Cdd:TIGR02490   8 DITIGADGTI---SQDGE--EVGRLGLVNFDNPNQLQREGDGLFRATGG------GPAPADSNVRVVQGYLEGSNVNAVS 76

                          90
                  ....*....|...
gi 1858859248 402 ELVDLISAQRNFQ 414
Cdd:TIGR02490  77 EMVDMIEAQRAYE 89
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
389-433 1.28e-06

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 47.42  E-value: 1.28e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1858859248 389 NGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQNILQI 433
Cdd:COG1558    89 DGYVRYPNVNVVEEMVDMISASRSYEANVEVINTAKSMLLKTLEI 133
flgF PRK12641
flagellar basal-body rod protein FlgF;
20-125 1.97e-06

flagellar basal-body rod protein FlgF;


Pssm-ID: 105809 [Multi-domain]  Cd Length: 252  Bit Score: 48.79  E-value: 1.97e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248  20 SNNIANANTFGFKESRAEFgdvystSLFTNAKTTPGQGVQAAKVAQQFHEGSSIYTNNPLDLRIAGTGFFAVAKDrlvPQ 99
Cdd:PRK12641   23 ANNLANISTTGFKEKFILA------IQNHNVKNLYNSDKKITKEYYNLSPGTLRYTGRNLDLFIKDNGWLTIKDT---NG 93

                          90       100
                  ....*....|....*....|....*.
gi 1858859248 100 QNELTRNGAFHLDKNSFMVTANDEFL 125
Cdd:PRK12641   94 QEAYTKNGHLKINSKRKLTVQNNEVI 119
FlgK COG1256
Flagellar hook-associated protein FlgK [Cell motility];
3-69 2.00e-06

Flagellar hook-associated protein FlgK [Cell motility];


Pssm-ID: 440868 [Multi-domain]  Cd Length: 479  Bit Score: 49.88  E-value: 2.00e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1858859248   3 YVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGdvySTSLFTNAKTTPGQGVQAAKVAQQFHE 69
Cdd:COG1256     7 NIALSGLNAAQRALDVTSHNIANANTPGYSRQRVVLS---AAGPTATGAGQVGTGVRVTGIRRIRDE 70
flgG PRK12817
flagellar basal body rod protein FlgG; Reviewed
 386-421 2.33e-06

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183767 [Multi-domain]  Cd Length: 260  Bit Score: 48.92  E-value: 2.33e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1858859248 386 SISNGSLEQSNIDMTQELVDLISAQRNFQANSRALE 421
Cdd:PRK12817  211 DILQGYLENSNVDLGKEMTDMIITQRAFQLSSKGIK 246
flgG PRK12819
flagellar basal-body rod protein FlgG;
3-127 3.10e-06

flagellar basal-body rod protein FlgG;


Pssm-ID: 183769 [Multi-domain]  Cd Length: 257  Bit Score: 48.34  E-value: 3.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   3 YVSLSGLSAAQMDLNTTSNNIANANTFGFKESR--AEFGDVYSTSLFTNAKTTPGQGVQAAKVAQQFH----EGSSIYTN 76
Cdd:PRK12819    5 YIGSMGMMNYMQRINVHSNNVANAQTTGFKAENmtSKVFDVQDTYRRGDGAVTNIGSVDYAVVPAATHvnlvQGNIQMTN 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1858859248  77 NPLDLRI-----AGTGFFAVAKDrlvpQQNELTRNGAFHLDKNSFMVTANDEFLLG 127
Cdd:PRK12819   85 SDTDFFLddgpaGTSSFFVTSKN----GETFLTRDGSFTLNSDRYLQTASGAFVMG 136
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 4-63 3.80e-06

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 45.97  E-value: 3.80e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1858859248   4 VSLSGLSAAQMDLNTTSNNIANANTfgfkeSRAEFGDVY--STSLFTNA--KTTPGQGVQAAKV 63
Cdd:PRK05681    9 IAGSGLSAQSQRLNVISSNIANADS-----TAAPDGDPYrrKQVVFAAEldPGQGTGGVKVAKI 67
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 4-63 1.53e-05

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 44.27  E-value: 1.53e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1858859248   4 VSLSGLSAAQMDLNTTSNNIANANTFgfkesRAEFGD-------VYSTSLF-TNAKTTPGQGVQAAKV 63
Cdd:TIGR01395   6 VSASALSAQRVRMNVVSSNLANADST-----RTPAGDpyrrrrpVFEAELFqDRASRPGGSGVKVAKI 68
Flg_bb_rod pfam00460
Flagella basal body rod protein;
3-31 1.97e-05

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 41.01  E-value: 1.97e-05
                          10        20
                  ....*....|....*....|....*....
gi 1858859248   3 YVSLSGLSAAQMDLNTTSNNIANANTFGF 31
Cdd:pfam00460   2 YTAVSALNAQQIRLDVIANNIANANTPGY 30
flgK PRK07739
flagellar hook-associated protein FlgK; Validated
 5-65 2.15e-05

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236084 [Multi-domain]  Cd Length: 507  Bit Score: 46.55  E-value: 2.15e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1858859248   5 SLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGdvySTSLFT----NAKTTPGQ---GVQAAKVAQ 65
Cdd:PRK07739   11 ARRGLFAQQAALYVTGHNIANANTPGYTRQRVNLA---ATPPYPtpgmNRPKIPGQmgtGVEAGSVER 75
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
4-65 2.85e-05

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 43.57  E-value: 2.85e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1858859248   4 VSLSGLSAAQMDLNTTSNNIANANTfgfkeSRAEFGDVY-----STSLFTNAKTTPGQGVQAAKVAQ 65
Cdd:COG1558     9 IAGSGLTAQRLRLNVIASNLANANS-----TRTSDGGPYrrkqvVFEAVLDRAGSGAAGVRVAGIVE 70
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 389-433 4.71e-05

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 42.89  E-value: 4.71e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1858859248 389 NGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQNILQI 433
Cdd:PRK05681   88 KGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLTI 132
flgK PRK06945
flagellar hook-associated protein FlgK; Validated
 4-69 5.99e-05

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 235895 [Multi-domain]  Cd Length: 651  Bit Score: 45.39  E-value: 5.99e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1858859248   4 VSLSGLSAAQMDLNTTSNNIANANTFGFKESR---AEFGDVYSTSLFTnakttpGQGVQAAKVAQQFHE 69
Cdd:PRK06945    7 IGLSGLNAAQWGLTTTGHNISNAATPGYSRQRvvqAEAGGQYTGSGYL------GQGVNVVTVKRQYSQ 69
flgF PRK12643
flagellar basal body rod protein FlgF; Reviewed
 1-150 7.06e-05

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 139117 [Multi-domain]  Cd Length: 209  Bit Score: 43.68  E-value: 7.06e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   1 MSYVSLSGLSAAQMDLN---TTSNNIANANTFGFKESRAEFGDVY--STSLFTN---AKTTPGQGVQaakvaqqfhEGSS 72
Cdd:PRK12643    1 MDHAIYTAMGAARQSLElqaVTANNLANASTPGFRAQLAAMRAVPidGPSLATRtmvTTSTPGVDIS---------QGTM 71

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1858859248  73 IYTNNPLDLRIAGTGFFAVAkdrlVPQQNE-LTRNGAFHLDKNSFMVTAndefllGYEVNPDTGdvlsyepkPINIPPQ 150
Cdd:PRK12643   72 NFSGRPLDVALQQDGYLAVQ----LPDGSEaYTRNGNIQISANGQMTVQ------GYPLMGDNG--------PIDVPPQ 132
flgK PRK08147
flagellar hook-associated protein FlgK; Validated
 6-69 7.77e-05

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236165 [Multi-domain]  Cd Length: 547  Bit Score: 45.05  E-value: 7.77e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1858859248   6 LSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSlftNAKTTPGQGVQAAKVAQQFHE 69
Cdd:PRK08147    9 MSGLNAAQAALNTVSNNISNYNVAGYTRQTTILAQAGSTL---TAGGWIGNGVYVSGVQREYDA 69
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 389-433 7.90e-05

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 42.34  E-value: 7.90e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1858859248 389 NGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQNILQI 433
Cdd:TIGR01395  89 EGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMFLRTLEI 133
flgK PRK06799
flagellar hook-associated protein FlgK; Validated
 5-63 3.85e-04

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 180699 [Multi-domain]  Cd Length: 431  Bit Score: 42.56  E-value: 3.85e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1858859248   5 SLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTpGQGVQAAKV 63
Cdd:PRK06799    9 PLSGMLAAQMGLQTTQQNLSNIHTPGYVRQMVNYGSVGASGGLLPEQQI-GYGVQTLGV 66
flgK_ends TIGR02492
flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of ...
 3-66 4.27e-04

flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274162 [Multi-domain]  Cd Length: 323  Bit Score: 41.95  E-value: 4.27e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1858859248   3 YVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYsTSLFTNAKTtpGQGVQAAKVAQQ 66
Cdd:TIGR02492   4 NIAKSGLSASQIALSVTSNNIANANTPGYSRQRAVLTAVP-AGGQGGKQI--GTGVKVTSIRRI 64
flgK PRK05683
flagellar hook-associated protein FlgK; Validated
 4-66 5.68e-04

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 235558 [Multi-domain]  Cd Length: 676  Bit Score: 42.41  E-value: 5.68e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1858859248   4 VSLSGLSAAQMDLNTTSNNIANANTFGFkeSRAefgdvystslftnakttpgQGVQAAKVAQQ 66
Cdd:PRK05683    6 IGLSGLGASQTALAVTGNNIANVDTAGY--SRQ-------------------QTVQTTKASQQ 47
flgG PRK12819
flagellar basal-body rod protein FlgG;
385-420 6.86e-04

flagellar basal-body rod protein FlgG;


Pssm-ID: 183769 [Multi-domain]  Cd Length: 257  Bit Score: 41.02  E-value: 6.86e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1858859248 385 GSISNGSLEQSNIDMTQELVDLISAQRNFQANSRAL 420
Cdd:PRK12819  206 GIVKNGMLENSNVDMTKEMADLMTDQRMIQASQRVM 241
flgC PRK06802
flagellar basal body rod protein FlgC; Reviewed
 4-79 3.82e-03

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 180702  Cd Length: 141  Bit Score: 37.47  E-value: 3.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1858859248   4 VSLSGLSAAQMDLNTTSNNIANANTFG------FKESRAEFGDVYSTSLFTNAKTTPGQGVQAAKVAQQFHEGSSIYTNN 77
Cdd:PRK06802    9 IAGSAMTAQTIRLNTVASNLANAESPAasaataYKARSPVFAAVYSARTLADPRGVQGAQVQVLDVVQVGGSVKRYEPNN 88


                  ..
gi 1858859248  78 PL 79
Cdd:PRK06802   89 PL 90
flgK PRK07191
flagellar hook-associated protein FlgK; Validated
 1-63 4.07e-03

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 180871 [Multi-domain]  Cd Length: 456  Bit Score: 39.42  E-value: 4.07e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1858859248   1 MSYVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGdvySTSLFTNAKTTPGQGVQAAKV 63
Cdd:PRK07191    3 FIRTAFSGMQAAQAHLNATSMNIANMHTPGYSRQGVEQS---AIGADGQGGVNAGNGVNVDGI 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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