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Conserved domains on  [gi|1868909151|gb|QLG43362|]
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30S ribosomal protein S20 [Mesomycoplasma hyopneumoniae]

Protein Classification

30S ribosomal protein S20( domain architecture ID 10000824)

30S ribosomal protein S20 binds directly to the 16S rRNA and is involved in post-translational inhibition of the polyamine biosynthetic enzymes arginine and ornithine decarboxylase

Gene Symbol:  rpsT
Gene Ontology:  GO:0015935|GO:0003735|GO:0006412|GO:0019843
PubMed:  24524803
SCOP:  4000787

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpsT COG0268
Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S20 ...
 1-83 5.32e-15

Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S20 is part of the Pathway/BioSystem: Ribosome 30S subunit


:

Pssm-ID: 440038  Cd Length: 87  Bit Score: 63.56  E-value: 5.32e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1868909151  1 MANIKSKIKSITKMQKARARNNAIKSRVKTAIKKAKIAI-STDASNKSDLIAKAHSEISKAKSKGVFHKNKANRKISRLN 79
Cdd:COG0268    1 MANIKSAKKRIRQNEKRRLRNRARKSRLRTAIKKVRKAIaAGDKEAAQEALKAAQSKLDKAASKGVIHKNKAARKKSRLA 80


                 ....
gi 1868909151 80 LFAN 83
Cdd:COG0268   81 KKVN 84
 
Name Accession Description Interval E-value
RpsT COG0268
Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S20 ...
 1-83 5.32e-15

Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S20 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440038  Cd Length: 87  Bit Score: 63.56  E-value: 5.32e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1868909151  1 MANIKSKIKSITKMQKARARNNAIKSRVKTAIKKAKIAI-STDASNKSDLIAKAHSEISKAKSKGVFHKNKANRKISRLN 79
Cdd:COG0268    1 MANIKSAKKRIRQNEKRRLRNRARKSRLRTAIKKVRKAIaAGDKEAAQEALKAAQSKLDKAASKGVIHKNKAARKKSRLA 80


                 ....
gi 1868909151 80 LFAN 83
Cdd:COG0268   81 KKVN 84
Ribosomal_S20p pfam01649
Ribosomal protein S20; Bacterial ribosomal protein S20 interacts with 16S rRNA.
 6-79 2.34e-13

Ribosomal protein S20; Bacterial ribosomal protein S20 interacts with 16S rRNA.


Pssm-ID: 460280  Cd Length: 76  Bit Score: 58.98  E-value: 2.34e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1868909151  6 SKIKSITKMQKARARNNAIKSRVKTAIKKAKIAIST-DASNKSDLIAKAHSEISKAKSKGVFHKNKANRKISRLN 79
Cdd:pfam01649  1 SAKKRIRQNEKRRLRNKAVKSRVRTAIKKVRAAVAAgDKEAAEAALKAAVSKIDKAASKGVIHKNTAARKKSRLA 75
rps20 CHL00102
ribosomal protein S20
 1-78 5.07e-06

ribosomal protein S20


Pssm-ID: 214366  Cd Length: 93  Bit Score: 40.90  E-value: 5.07e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1868909151  1 MANIKSKIKSITKMQKARARNNAIKSRVKTAIKKAKIAIST--------DASNKSDLIAKAHSEISKAKSKGVFHKNKAN 72
Cdd:CHL00102   1 MANNKSAIKRIKISERNRLRNKAYKSSVKTLIKKYLKNLEDyktspnsnNKKKVQETLSSVYSKIDKAVKKGVFHKNTAA 80


                 ....*.
gi 1868909151 73 RKISRL 78
Cdd:CHL00102  81 RKKSKL 86
S20 TIGR00029
ribosomal protein S20; This family consists of bacterial (and chloroplast) examples of the ...
 1-79 6.10e-05

ribosomal protein S20; This family consists of bacterial (and chloroplast) examples of the bacteria ribosomal small subunit protein S20. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 211539  Cd Length: 87  Bit Score: 37.91  E-value: 6.10e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1868909151  1 MANIKSKIKSITKMQKARARNNAIKSRVKTAIKKAKIAISTDASNKS-DLIAKAHSEISKAKSKGVFHKNKANRKISRLN 79
Cdd:TIGR00029  1 MANIKSAEKRIRQNEKRRLHNASQKSKMKTIIKKVYAAIAAGDKDKAqEAFKEAAKKLDRAARKGIIHKNKAARKKSRLA 80
 
Name Accession Description Interval E-value
RpsT COG0268
Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S20 ...
 1-83 5.32e-15

Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S20 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440038  Cd Length: 87  Bit Score: 63.56  E-value: 5.32e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1868909151  1 MANIKSKIKSITKMQKARARNNAIKSRVKTAIKKAKIAI-STDASNKSDLIAKAHSEISKAKSKGVFHKNKANRKISRLN 79
Cdd:COG0268    1 MANIKSAKKRIRQNEKRRLRNRARKSRLRTAIKKVRKAIaAGDKEAAQEALKAAQSKLDKAASKGVIHKNKAARKKSRLA 80


                 ....
gi 1868909151 80 LFAN 83
Cdd:COG0268   81 KKVN 84
Ribosomal_S20p pfam01649
Ribosomal protein S20; Bacterial ribosomal protein S20 interacts with 16S rRNA.
 6-79 2.34e-13

Ribosomal protein S20; Bacterial ribosomal protein S20 interacts with 16S rRNA.


Pssm-ID: 460280  Cd Length: 76  Bit Score: 58.98  E-value: 2.34e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1868909151  6 SKIKSITKMQKARARNNAIKSRVKTAIKKAKIAIST-DASNKSDLIAKAHSEISKAKSKGVFHKNKANRKISRLN 79
Cdd:pfam01649  1 SAKKRIRQNEKRRLRNKAVKSRVRTAIKKVRAAVAAgDKEAAEAALKAAVSKIDKAASKGVIHKNTAARKKSRLA 75
rps20 CHL00102
ribosomal protein S20
 1-78 5.07e-06

ribosomal protein S20


Pssm-ID: 214366  Cd Length: 93  Bit Score: 40.90  E-value: 5.07e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1868909151  1 MANIKSKIKSITKMQKARARNNAIKSRVKTAIKKAKIAIST--------DASNKSDLIAKAHSEISKAKSKGVFHKNKAN 72
Cdd:CHL00102   1 MANNKSAIKRIKISERNRLRNKAYKSSVKTLIKKYLKNLEDyktspnsnNKKKVQETLSSVYSKIDKAVKKGVFHKNTAA 80


                 ....*.
gi 1868909151 73 RKISRL 78
Cdd:CHL00102  81 RKKSKL 86
S20 TIGR00029
ribosomal protein S20; This family consists of bacterial (and chloroplast) examples of the ...
 1-79 6.10e-05

ribosomal protein S20; This family consists of bacterial (and chloroplast) examples of the bacteria ribosomal small subunit protein S20. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 211539  Cd Length: 87  Bit Score: 37.91  E-value: 6.10e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1868909151  1 MANIKSKIKSITKMQKARARNNAIKSRVKTAIKKAKIAISTDASNKS-DLIAKAHSEISKAKSKGVFHKNKANRKISRLN 79
Cdd:TIGR00029  1 MANIKSAEKRIRQNEKRRLHNASQKSKMKTIIKKVYAAIAAGDKDKAqEAFKEAAKKLDRAARKGIIHKNKAARKKSRLA 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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