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Conserved domains on  [gi|1878894930|gb|QLP49916|]
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YggT family protein [Klebsiella michiganensis]

Protein Classification

YggT family protein( domain architecture ID 10492032)

YggT family protein similar to Escherichia coli membrane protein YggT

PubMed:  19966467

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 92-174 4.14e-18

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 440525  Cd Length: 84  Bit Score: 74.77  E-value: 4.14e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878894930  92 ISALLILIKTVGSLIFWVLLLMAIMSWVSQ-GRSPVEYVLMQLADPLLRPIRRLLPSMGGIDFSPMVLVLLLYVINMGIA 170
Cdd:COG0762     1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPfGYNPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSPIVAILILQLLQRLLL 80


                  ....
gi 1878894930 171 ELLQ 174
Cdd:COG0762    81 GLLA 84
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 9-78 3.01e-11

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


:

Pssm-ID: 460533  Cd Length: 71  Bit Score: 56.34  E-value: 3.01e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1878894930   9 STVIELYTMVVLLRVWMQW-ARCDFYNPFSQFVVKATQPVVGPLRRIIPAMGPLDSASLLVAFILCVVKAI 78
Cdd:pfam02325   1 YTLLSLYILLLIIRALLSWvPPNPFVNPIAQFLYRLTEPLLRPLRRIIPPPGGLDLSPLVALLLLQLLRIL 71
 
Name Accession Description Interval E-value
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 92-174 4.14e-18

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 74.77  E-value: 4.14e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878894930  92 ISALLILIKTVGSLIFWVLLLMAIMSWVSQ-GRSPVEYVLMQLADPLLRPIRRLLPSMGGIDFSPMVLVLLLYVINMGIA 170
Cdd:COG0762     1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPfGYNPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSPIVAILILQLLQRLLL 80


                  ....
gi 1878894930 171 ELLQ 174
Cdd:COG0762    81 GLLA 84
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 9-78 3.01e-11

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 56.34  E-value: 3.01e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1878894930   9 STVIELYTMVVLLRVWMQW-ARCDFYNPFSQFVVKATQPVVGPLRRIIPAMGPLDSASLLVAFILCVVKAI 78
Cdd:pfam02325   1 YTLLSLYILLLIIRALLSWvPPNPFVNPIAQFLYRLTEPLLRPLRRIIPPPGGLDLSPLVALLLLQLLRIL 71
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 101-167 1.95e-10

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 54.42  E-value: 1.95e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1878894930 101 TVGSLIFWVLLLMAIMSWVSQG--RSPVEYVLMQLADPLLRPIRRLLPSMGGIDFSPMVLVLLLYVINM 167
Cdd:pfam02325   2 TLLSLYILLLIIRALLSWVPPNpfVNPIAQFLYRLTEPLLRPLRRIIPPPGGLDLSPLVALLLLQLLRI 70
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 1-80 4.06e-09

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 51.27  E-value: 4.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878894930   1 MKTLTFLLSTVIELYTMVVLLRVWMQWARCDFYNPFSQFVVKATQPVVGPLRRIIPAMGPLDSASLLVAFILCVVKAIVL 80
Cdd:COG0762     1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPFGYNPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSPIVAILILQLLQRLLL 80
 
Name Accession Description Interval E-value
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 92-174 4.14e-18

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 74.77  E-value: 4.14e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878894930  92 ISALLILIKTVGSLIFWVLLLMAIMSWVSQ-GRSPVEYVLMQLADPLLRPIRRLLPSMGGIDFSPMVLVLLLYVINMGIA 170
Cdd:COG0762     1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPfGYNPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSPIVAILILQLLQRLLL 80


                  ....
gi 1878894930 171 ELLQ 174
Cdd:COG0762    81 GLLA 84
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 9-78 3.01e-11

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 56.34  E-value: 3.01e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1878894930   9 STVIELYTMVVLLRVWMQW-ARCDFYNPFSQFVVKATQPVVGPLRRIIPAMGPLDSASLLVAFILCVVKAI 78
Cdd:pfam02325   1 YTLLSLYILLLIIRALLSWvPPNPFVNPIAQFLYRLTEPLLRPLRRIIPPPGGLDLSPLVALLLLQLLRIL 71
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 101-167 1.95e-10

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 54.42  E-value: 1.95e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1878894930 101 TVGSLIFWVLLLMAIMSWVSQG--RSPVEYVLMQLADPLLRPIRRLLPSMGGIDFSPMVLVLLLYVINM 167
Cdd:pfam02325   2 TLLSLYILLLIIRALLSWVPPNpfVNPIAQFLYRLTEPLLRPLRRIIPPPGGLDLSPLVALLLLQLLRI 70
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 1-80 4.06e-09

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 51.27  E-value: 4.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1878894930   1 MKTLTFLLSTVIELYTMVVLLRVWMQWARCDFYNPFSQFVVKATQPVVGPLRRIIPAMGPLDSASLLVAFILCVVKAIVL 80
Cdd:COG0762     1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPFGYNPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSPIVAILILQLLQRLLL 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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