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Conserved domains on  [gi|1879980253|gb|QLV72887|]
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DUF2574 family protein [Citrobacter freundii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2574 super family cl12422
Protein of unknown function (DUF2574); This family of proteins appears to be restricted to ...
 1-94 1.16e-20

Protein of unknown function (DUF2574); This family of proteins appears to be restricted to Enterobacteriaceae. Members of the family are annotated as yehE however currently no function is known.


The actual alignment was detected with superfamily member pfam10836:

Pssm-ID: 287772  Cd Length: 93  Bit Score: 78.47  E-value: 1.16e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1879980253  1 MKKSLFLGVITLAYGMSLQALASDTidGKLTIIGHIVESTCHIDMTGGEPQNDCQSDAARLTAGNDKPN-YQGVNTNRVM 79
Cdd:pfam10836  1 MKKYLLMGIIVLAYGLSSPVFASDT--ATLTISGRVTPPTCSMAVVNGQLQQRCGNLTYNVDTRHLASSpVRGVTTEVVT 78

                         90
                 ....*....|....*
gi 1879980253 80 LPGDTTRQIVLNTYD 94
Cdd:pfam10836 79 APGDSKRQIVLNRYD 93
 
Name Accession Description Interval E-value
DUF2574 pfam10836
Protein of unknown function (DUF2574); This family of proteins appears to be restricted to ...
 1-94 1.16e-20

Protein of unknown function (DUF2574); This family of proteins appears to be restricted to Enterobacteriaceae. Members of the family are annotated as yehE however currently no function is known.


Pssm-ID: 287772  Cd Length: 93  Bit Score: 78.47  E-value: 1.16e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1879980253  1 MKKSLFLGVITLAYGMSLQALASDTidGKLTIIGHIVESTCHIDMTGGEPQNDCQSDAARLTAGNDKPN-YQGVNTNRVM 79
Cdd:pfam10836  1 MKKYLLMGIIVLAYGLSSPVFASDT--ATLTISGRVTPPTCSMAVVNGQLQQRCGNLTYNVDTRHLASSpVRGVTTEVVT 78

                         90
                 ....*....|....*
gi 1879980253 80 LPGDTTRQIVLNTYD 94
Cdd:pfam10836 79 APGDSKRQIVLNRYD 93
 
Name Accession Description Interval E-value
DUF2574 pfam10836
Protein of unknown function (DUF2574); This family of proteins appears to be restricted to ...
 1-94 1.16e-20

Protein of unknown function (DUF2574); This family of proteins appears to be restricted to Enterobacteriaceae. Members of the family are annotated as yehE however currently no function is known.


Pssm-ID: 287772  Cd Length: 93  Bit Score: 78.47  E-value: 1.16e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1879980253  1 MKKSLFLGVITLAYGMSLQALASDTidGKLTIIGHIVESTCHIDMTGGEPQNDCQSDAARLTAGNDKPN-YQGVNTNRVM 79
Cdd:pfam10836  1 MKKYLLMGIIVLAYGLSSPVFASDT--ATLTISGRVTPPTCSMAVVNGQLQQRCGNLTYNVDTRHLASSpVRGVTTEVVT 78

                         90
                 ....*....|....*
gi 1879980253 80 LPGDTTRQIVLNTYD 94
Cdd:pfam10836 79 APGDSKRQIVLNRYD 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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