|
Name |
Accession |
Description |
Interval |
E-value |
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
2-1467 |
0e+00 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 2514.46 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 2 IERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKL 81
Cdd:COG3096 1 IERGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 82 KAGVCYSMLDTINSRHQRVVVGVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLPLNELKDKLEAME 161
Cdd:COG3096 81 KPGVCYAALDVVNSRGQRLLVGVRLQQVAGRDKKVDIKPFIIQGLPEDVKPTDLLTETLDGRQARVLPLNELKEKAEELE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 162 GVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALRE 241
Cdd:COG3096 161 GVQFKQFNSITDYHAFMFDLGVTPKRLRSSSDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALRE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 242 NRMTLEAIRVTQSDRDLFKHLISEATNYVAADYMRHANERRVHLDKALEFRRELHTSRQQLAAEQYKHVDMARELAEHNG 321
Cdd:COG3096 241 NRMTLEAIRVTQSDRDLFKHLITEATNYVAADYMRHANERRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 322 AEGDLEADYQAASDHLNLVQTALRQQEKIERYEADLDELQVRLEEQNEVVAEAIERQEENEARAEAAELEVDELKSQLAD 401
Cdd:COG3096 321 RESDLEQDYQAASDHLNLVQTALRQQEKIERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLAD 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 402 YQQALDVQQTRAIQYNQAIAALNRAKELCHLPDLTADSAAEWLETFQAKELEATEKMLSLEQKMSMAQTAHSQFEQAYQL 481
Cdd:COG3096 401 YQQALDVQQTRAIQYQQAVQALEKARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYEL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 482 VVAINGPLARNEAWDVARELLREGVDQRHLAEQVQPLRMRLSELEQRLREQQEAERLLADFCKRQGKNFDI-DELEALHQ 560
Cdd:COG3096 481 VCKIAGEVERSQAWQTARELLRRYRSQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAaEELEELLA 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 561 ELEARIASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEAFSSSQDVTEYLQQLLERER 640
Cdd:COG3096 561 ELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLERER 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 641 EAIVERDEVGARKNAVDEEIERLSQPGGSEDQRLNALAERFGGVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQV 720
Cdd:COG3096 641 EATVERDELAARKQALESQIERLSQPGGAEDPRLLALAERLGGVLLSEIYDDVTLEDAPYFSALYGPARHAIVVPDLSAV 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 721 TEHLEGLTDCPEDLYLIEGDPQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPEVPLFGRAARESRIESLHAEREVLSER 800
Cdd:COG3096 721 KEQLAGLEDCPEDLYLIEGDPDSFDDSVFDAEELEDAVVVKLSDRQWRYSRFPEVPLFGRAAREKRLEELRAERDELAEQ 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 801 FATLSFDVQKTQRLHQAFSRFIGSHLAVAFESDPEAEIRQLNSRRVELERALSNHENDNQQQRIQFEQAKEGVTALNRIL 880
Cdd:COG3096 801 YAKASFDVQKLQRLHQAFSQFVGGHLAVAFAPDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLL 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 881 PRLNLLADDSLADRVDEIRERLDEAQEAARFVQQFGNQLAKLEPIVSVLQSDPEQFEQLKEDYAYSQQMQRDARQQAFAL 960
Cdd:COG3096 881 PQANLLADETLADRLEELREELDAAQEAQAFIQQHGKALAQLEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFAL 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 961 TEVVQRRAHFSYSDSAEMLSGNSDLNEKLRERLEQAEAERTRAREALRGHAAQLSQYNQVLASLKSSYDTKKELLNDLQR 1040
Cdd:COG3096 961 SEVVQRRPHFSYEDAVGLLGENSDLNEKLRARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQ 1040
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1041 ELQDIGVRADSGAEERARIRRDELHAQLSNNRSRRNQLEKALTFCEAEMDNLTRKLRKLERDYFEMREQVVTAKAGWCAV 1120
Cdd:COG3096 1041 ELEELGVQADAEAEERARIRRDELHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQEREQVVQAKAGWCAV 1120
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1121 MRMVKDNGVERRLHRRELAYLSADDLRSMSDKALGALRLAVADNEHLRDVLRLSEDPKRPERKIQFFVAVYQHLRERIRQ 1200
Cdd:COG3096 1121 LRLARDNDVERRLHRRELAYLSADELRSMSDKALGALRLAVADNEHLRDALRLSEDPRRPERKVQFYIAVYQHLRERIRQ 1200
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1201 DIIRTDDPVEAIEQMEIELSRLTEELTSREQKLAISSRSVANIIRKTIQREQNRIRMLNQGLQNVSFGQVNSVRLNVNVR 1280
Cdd:COG3096 1201 DIIRTDDPVEAIEQMEIELARLTEELTSREQKLAISSESVANIIRKTIQREQNRIRMLNQGLQNVSFGQVKGVRLNVNIR 1280
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1281 ETHAMLLDVLSEQHEQHQDLFNSNRLTFSEALAKLYQRLNPQIDMGQRTPQTIGEELLDYRNYLEMEVEVNRGSDGWLRA 1360
Cdd:COG3096 1281 ETHAQLLDALSEQQEQHQDLFFSNRLTFSEALAKLYQRLNPHIDMGQRSPQTIGEELLDYRNYLELEVEVNRGADGWLRA 1360
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1361 ESGALSTGEAIGTGMSILVMVVQSWEDESRRLRGKDISPCRLLFLDEAARLDARSIATLFELCERLQMQLIIAAPENISP 1440
Cdd:COG3096 1361 ESGALSTGEAIGTGMSILLMVVQSWEEESRRLRGKDISPCRLLFLDEAARLDAKSIATLFELCERLDMQLLIAAPENISP 1440
|
1450 1460
....*....|....*....|....*..
gi 1882396408 1441 EKGTTYKLVRKVFQNTEHVHVVGLRGF 1467
Cdd:COG3096 1441 EKGTTYKLVRKVFNNQEHVHVVGLRGF 1467
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1-1485 |
0e+00 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 2487.50 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1 MIERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGK 80
Cdd:PRK04863 1 MIERGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 81 LKAGVCYSMLDTINSRHQRVVVGVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLPLNELKDKLEAM 160
Cdd:PRK04863 81 LKAGVCYAALDVVNSRGQRVLVGVRLQQVAGRDRKVDIKPFAIQGLPDSVQPTDLLTETVNERQARVLTLNELKDKAAAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 161 EGVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALR 240
Cdd:PRK04863 161 EGVQFKQFNSITDYHSLMFDLGIIPRRLRSSSDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 241 ENRMTLEAIRVTQSDRDLFKHLISEATNYVAADYMRHANERRVHLDKALEFRRELHTSRQQLAAEQYKHVDMARELAEHN 320
Cdd:PRK04863 241 ENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELN 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 321 GAEGDLEADYQAASDHLNLVQTALRQQEKIERYEADLDELQVRLEEQNEVVAEAIERQEENEARAEAAELEVDELKSQLA 400
Cdd:PRK04863 321 EAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 401 DYQQALDVQQTRAIQYNQAIAALNRAKELCHLPDLTADSAAEWLETFQAKELEATEKMLSLEQKMSMAQTAHSQFEQAYQ 480
Cdd:PRK04863 401 DYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQ 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 481 LVVAINGPLARNEAWDVARELLREGVDQRHLAEQVQPLRMRLSELEQRLREQQEAERLLADFCKRQGKNF-DIDELEALH 559
Cdd:PRK04863 481 LVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLdDEDELEQLQ 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 560 QELEARIASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEAFSSSQDVTEYLQQLLERE 639
Cdd:PRK04863 561 EELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERE 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 640 REAIVERDEVGARKNAVDEEIERLSQPGGSEDQRLNALAERFGGVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQ 719
Cdd:PRK04863 641 RELTVERDELAARKQALDEEIERLSQPGGSEDPRLNALAERFGGVLLSEIYDDVSLEDAPYFSALYGPARHAIVVPDLSD 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 720 VTEHLEGLTDCPEDLYLIEGDPQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPEVPLFGRAARESRIESLHAEREVLSE 799
Cdd:PRK04863 721 AAEQLAGLEDCPEDLYLIEGDPDSFDDSVFSVEELEKAVVVKIADRQWRYSRFPEVPLFGRAAREKRIEQLRAEREELAE 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 800 RFATLSFDVQKTQRLHQAFSRFIGSHLAVAFESDPEAEIRQLNSRRVELERALSNHENDNQQQRIQFEQAKEGVTALNRI 879
Cdd:PRK04863 801 RYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRL 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 880 LPRLNLLADDSLADRVDEIRERLDEAQEAARFVQQFGNQLAKLEPIVSVLQSDPEQFEQLKEDYAYSQQMQRDARQQAFA 959
Cdd:PRK04863 881 LPRLNLLADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFA 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 960 LTEVVQRRAHFSYSDSAEMLSGNSDLNEKLRERLEQAEAERTRAREALRGHAAQLSQYNQVLASLKSSYDTKKELLNDLQ 1039
Cdd:PRK04863 961 LTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELK 1040
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1040 RELQDIGVRADSGAEERARIRRDELHAQLSNNRSRRNQLEKALTFCEAEMDNLTRKLRKLERDYFEMREQVVTAKAGWCA 1119
Cdd:PRK04863 1041 QELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCA 1120
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1120 VMRMVKDNGVERRLHRRELAYLSADDLRSMSDKALGALRLAVADNEHLRDVLRLSEDPKRPERKIQFFVAVYQHLRERIR 1199
Cdd:PRK04863 1121 VLRLVKDNGVERRLHRRELAYLSADELRSMSDKALGALRLAVADNEHLRDVLRLSEDPKRPERKVQFYIAVYQHLRERIR 1200
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1200 QDIIRTDDPVEAIEQMEIELSRLTEELTSREQKLAISSRSVANIIRKTIQREQNRIRMLNQGLQNVSFGQVNSVRLNVNV 1279
Cdd:PRK04863 1201 QDIIRTDDPVEAIEQMEIELSRLTEELTSREQKLAISSESVANIIRKTIQREQNRIRMLNQGLQNISFGQVKSVRLNVNV 1280
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1280 RETHAMLLDVLSEQHEQHQDLFNSNRLTFSEALAKLYQRLNPQIDMGQRTPQTIGEELLDYRNYLEMEVEVNRGSDGWLR 1359
Cdd:PRK04863 1281 RETHAMLLDALSEQQEQHQDLFNSARLTFSEALAKLYQRLNPHIDMGQRTPQTIGEELLDYRNYLELEVEVNRGADGWLR 1360
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1360 AESGALSTGEAIGTGMSILVMVVQSWEDESRRLRGKDISPCRLLFLDEAARLDARSIATLFELCERLQMQLIIAAPENIS 1439
Cdd:PRK04863 1361 AESGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEAARLDAKSIATLFELCERLDMQLLIAAPENIS 1440
|
1450 1460 1470 1480
....*....|....*....|....*....|....*....|....*.
gi 1882396408 1440 PEKGTTYKLVRKVFQNTEHVHVVGLRGFTPQLPETLPGTVDAPSEA 1485
Cdd:PRK04863 1441 PEKGTTYKLVRKVFNNREHVHVVGLRGFAQLLPDTLPGQDEAESGA 1486
|
|
| MukB |
pfam04310 |
MukB N-terminal; This family represents the N-terminal region of MukB, one of a group of ... |
2-227 |
1.16e-141 |
|
MukB N-terminal; This family represents the N-terminal region of MukB, one of a group of bacterial proteins essential for the movement of nucleoids from mid-cell towards the cell quarters (i.e. chromosome partitioning). The structure of the N-terminal domain consists of an antiparallel six-stranded beta sheet surrounded by one helix on one side and by five helices on the other side. It contains an exposed Walker A loop in an unexpected helix-loop-helix motif (in other proteins, Walker A motifs generally adopt a P loop conformation as part of a strand-loop-helix motif embedded in a conserved topology of alternating helices and (parallel) beta strands).
Pssm-ID: 427856 [Multi-domain] Cd Length: 226 Bit Score: 432.68 E-value: 1.16e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 2 IERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKL 81
Cdd:pfam04310 1 IERGKFQSLTMINWNGFFARTFDLDQLVTTLSGGNGAGKSTTMAAFITALIPDLSLLHFRNTTEAGSTSGSRDKGLYGKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 82 KAGVCYSMLDTINSRHQRVVVGVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLPLNELKDKLEAME 161
Cdd:pfam04310 81 QAGHCYSAIDVANSRGQRLWFGVHLQQVAGRDRKVDITPFAIQGLPEDVQPTDVLLERLDDGHARVRSLNELKDAAAELG 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1882396408 162 GVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSG 227
Cdd:pfam04310 161 GARFKQFNSITDYHNFMFDMGVTPKKLRDQRDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSG 226
|
|
| MukB_hinge |
pfam16330 |
MukB hinge domain; The hinge domain of chromosome partition protein MukB is responsible for ... |
644-810 |
1.58e-80 |
|
MukB hinge domain; The hinge domain of chromosome partition protein MukB is responsible for dimerization and is also involved in protein-DNA interactions and conformational flexibility.
Pssm-ID: 435281 [Multi-domain] Cd Length: 167 Bit Score: 261.89 E-value: 1.58e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 644 VERDEVGARKNAVDEEIERLSQPGGSEDQRLNALAERFGGVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQVTEH 723
Cdd:pfam16330 1 QERDELAARKERLEKEIERLLQPGGSEDPRLPRLAERLGGVLLSEIYDDISLEDAPYFSALYGPARHAIVVPDLSDAADK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 724 LEGLTDCPEDLYLIEGDPQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPEVPLFGRAARESRIESLHAEREVLSERFAT 803
Cdd:pfam16330 81 LNGLEDCPDDLYLIEGDPDSFDESAFSAEELEDAVLVHDSDRQLRYSRFPEVPLFGRAAREKRLEALRAEREELAERYAK 160
|
....*..
gi 1882396408 804 LSFDVQK 810
Cdd:pfam16330 161 LAFDVQK 167
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
287-945 |
5.88e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.83 E-value: 5.88e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 287 KALEFRRELHTSRQQLAAEQYKHVDMARELAEHNGAEGDLEAdyqaasdhlnlvQTALRQQEKIeryEADLDELQVRLEE 366
Cdd:COG1196 214 RYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAEL------------EELEAELAEL---EAELEELRLELEE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 367 QNEVVAEAIERQEenearaeaaelevdELKSQLADYQQALDVQQTRAIQYNQAIAALNRAKElchlpdltadSAAEWLET 446
Cdd:COG1196 279 LELELEEAQAEEY--------------ELLAELARLEQDIARLEERRRELEERLEELEEELA----------ELEEELEE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 447 FQAKELEATEKMLSLEQKMSMAQTAHSQFEQAYQLVVAINGPLARnEAWDVARELLREGVDQRHLAEQVQPLRMRLSELE 526
Cdd:COG1196 335 LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE-ELEELAEELLEALRAAAELAAQLEELEEAEEALL 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 527 QRLREQQEAERlladfckrqgknfdidELEALHQELEARIASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLA 606
Cdd:COG1196 414 ERLERLEEELE----------------ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 607 AQNSLNQLSEQcgeafsssQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLSQPGGSEDQRLNALAERFGGVLL 686
Cdd:COG1196 478 ALAELLEELAE--------AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQ 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 687 SEIY-DDVSLEDAPYFSALYGPSRHAIVVPDLSQVTEHLEGLTDCPEDLY---LIEGDPQSFD--DSVFSVDELEKAVVV 760
Cdd:COG1196 550 NIVVeDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAavdLVASDLREADarYYVLGDTLLGRTLVA 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 761 KIADRQWRYS-----RFPEVPLFGRAARESRIESLHAEREVLSERFATLSFDVQKTQRLHQAfsrfigshlavafesdpE 835
Cdd:COG1196 630 ARLEAALRRAvtlagRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE-----------------E 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 836 AEIRQLNSRRVELERALSNHENDNQQQRIQFEQAKEGVTALNRILPRLNLLADDSLADRVDEIRERLDEAQEAARFVQQF 915
Cdd:COG1196 693 LELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERL 772
|
650 660 670
....*....|....*....|....*....|...
gi 1882396408 916 GNQLAKLEPIvsvlqsDP---EQFEQLKEDYAY 945
Cdd:COG1196 773 EREIEALGPV------NLlaiEEYEELEERYDF 799
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
345-1100 |
1.19e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.80 E-value: 1.19e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 345 RQQEKIERYEA---------------DLDELQVRLEEQNEVVAEAIERQEENEARAEAAELEVDELKSQLADYQQALDVQ 409
Cdd:TIGR02168 207 RQAEKAERYKElkaelrelelallvlRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEEL 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 410 QTRAIQYNQAIAALNRAKElchlpdltadsaaewletfqakelEATEKMLSLEQKMSMAQTAHSQFEQAYQLVvaingpL 489
Cdd:TIGR02168 287 QKELYALANEISRLEQQKQ------------------------ILRERLANLERQLEELEAQLEELESKLDEL------A 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 490 ARNEAWDVARELLREGVDQrhLAEQVQPLRMRLSELEQRLREQQEA-ERLLADFCKRQGKnfdIDELEALHQELEARIAS 568
Cdd:TIGR02168 337 EELAELEEKLEELKEELES--LEAELEELEAELEELESRLEELEEQlETLRSKVAQLELQ---IASLNNEIERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 569 LSDSVSNAREERMALRQEQEQLQSRIQSlmqrapvwlAAQNSLNQLSEQCGEAFSSSQDVTEYLQQLLEREREAIVER-- 646
Cdd:TIGR02168 412 LEDRRERLQQEIEELLKKLEEAELKELQ---------AELEELEEELEELQEELERLEEALEELREELEEAEQALDAAer 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 647 --DEVGARKNAVDEEIERLSQPGGSEDQRLNAlAERFGGVL--LSEIYD-DVSLEDApyFSALYGPSRHAIVVPDLSQVT 721
Cdd:TIGR02168 483 elAQLQARLDSLERLQENLEGFSEGVKALLKN-QSGLSGILgvLSELISvDEGYEAA--IEAALGGRLQAVVVENLNAAK 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 722 EHLEGLTD--------CPEDLYliegDPQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPEV--PLFGRAARESRIESLH 791
Cdd:TIGR02168 560 KAIAFLKQnelgrvtfLPLDSI----KGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsYLLGGVLVVDDLDNAL 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 792 AEREVL--SERFATLSFDVqktqrlhqafsrfIGSHLAVAFESDP--------EAEIRQLNSRRVELERALSNHENDNQQ 861
Cdd:TIGR02168 636 ELAKKLrpGYRIVTLDGDL-------------VRPGGVITGGSAKtnssilerRREIEELEEKIEELEEKIAELEKALAE 702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 862 QRIQFEQAKEGVTALNRILPRLNllaDDSLADRVDEIRERLDEAQEAARFVQQFGNQLAKLEPIVSVLQSDPEQFEQLKE 941
Cdd:TIGR02168 703 LRKELEELEEELEQLRKELEELS---RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 942 DYAYSQQMQRDARQQAFALTEvvQRRAHFSYSDSAEMLSGNSDlneKLRERLEQAEAERTRAREALRGHAAQLSQYNQVL 1021
Cdd:TIGR02168 780 AEAEIEELEAQIEQLKEELKA--LREALDELRAELTLLNEEAA---NLRERLESLERRIAATERRLEDLEEQIEELSEDI 854
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1022 ASLKSSYDTKKELLNDLQRELQDIGVRADSGAEERARIR--RDELHAQLSNNRSRRNQLEKALTFCEAEMDNLTRKLRKL 1099
Cdd:TIGR02168 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRseLEELSEELRELESKRSELRRELEELREKLAQLELRLEGL 934
|
.
gi 1882396408 1100 E 1100
Cdd:TIGR02168 935 E 935
|
|
| SbcC_Walker_B |
pfam13558 |
SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from ... |
1335-1425 |
5.57e-14 |
|
SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from eukaryotes and the prokaryotic homolog SbcCD complex subunit C. RAD50-ATPase forms a complex with Mre11-nuclease that detects and processes diverse and obstructed DNA ends. This domain is separated of the Walker A domain by a long coiled-coil domain and forms the nucleotide-binding domain (NBD) when the coiled coils fold back on themselves and bring together Walker A and B domains. Two RAD50-NBDs forms heterotetramers with a Mre11 nuclease dimer that assemble as catalytic head module that binds and cleaves DNA in an ATP-dependent reaction. Through secondary structural analysis, it has been suggested that there is a wide structural conservation in the Rad50/SMC protein family as seen in structural similarities between RAD50's hook and ABC-ATPase MukB's elbow region.
Pssm-ID: 463921 [Multi-domain] Cd Length: 90 Bit Score: 68.80 E-value: 5.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1335 EELLDYRNYLEMEVEVNR--GSDGWLRAESGALSTGEAIGTGMSILV--MVVQSWEDESRRlrgkdiSPCRLLFLDEA-A 1409
Cdd:pfam13558 1 ARVLDYRNWLSFEVEVRDedGSEVETYRRSGGLSGGEKQLLAYLPLAaaLAAQYGSAEGRP------PAPRLVFLDEAfA 74
|
90
....*....|....*.
gi 1882396408 1410 RLDARSIATLFELCER 1425
Cdd:pfam13558 75 KLDEENIRTALELLRA 90
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
230-1149 |
8.62e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 8.62e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 230 KAFQDMEAALRENRMTLEAIRVTQSDRDLfkHLISEATNYVAADYMRHANERRVHLDKALEFRRELHTSRQQLAAEQykh 309
Cdd:TIGR02168 213 ERYKELKAELRELELALLVLRLEELREEL--EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ--- 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 310 vdmaRELAEHNGAEGDLEADYQAASDHL-NLVQTALRQQEKIERYEADLDELQVRLEEQNEVVAEAIERQEENEARAEAA 388
Cdd:TIGR02168 288 ----KELYALANEISRLEQQKQILRERLaNLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEEL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 389 ELEVDELKSQLADYQQALDVQQTRAIQYNQAIAALNrakelchlpdltadsaaewletfqaKELEatekmlSLEQKMSMA 468
Cdd:TIGR02168 364 EAELEELESRLEELEEQLETLRSKVAQLELQIASLN-------------------------NEIE------RLEARLERL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 469 QTAHSQFEQAyqlVVAINGPLARNEAWDVARELLREGVDQRHLAEQVQPLRMRLSELEQRLREQQEAerlladfckrqgk 548
Cdd:TIGR02168 413 EDRRERLQQE---IEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQA------------- 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 549 nfdIDELEALHQELEARIASLSDSVSNAREERMALRQ---EQEQL---QSRIQSLMQRAPVWLAA-----QNSLNQLseq 617
Cdd:TIGR02168 477 ---LDAAERELAQLQARLDSLERLQENLEGFSEGVKAllkNQSGLsgiLGVLSELISVDEGYEAAieaalGGRLQAV--- 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 618 CGEAFSSSQDVTEYLQQlLEREREAIVERDEVGARKNAVDEEIERLSQPGgsedqrlnalaerFGGVLLSEIYDDVSLED 697
Cdd:TIGR02168 551 VVENLNAAKKAIAFLKQ-NELGRVTFLPLDSIKGTEIQGNDREILKNIEG-------------FLGVAKDLVKFDPKLRK 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 698 ApyFSALYGpsrHAIVVPDLSQVTEhLEGLTDCPEDLYLIEGDpqsfddsvfsvdelekavvvkIADRQWRYSRFPEVPL 777
Cdd:TIGR02168 617 A--LSYLLG---GVLVVDDLDNALE-LAKKLRPGYRIVTLDGD---------------------LVRPGGVITGGSAKTN 669
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 778 FGRAARESRIESLHAEREVLSERFATLSFDVQKTQRLHQAFsrfigshlavafesdpEAEIRQLNSRRVELERALSNHEN 857
Cdd:TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEEL----------------EEELEQLRKELEELSRQISALRK 733
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 858 DNQQQRIQFEQAKEGVTALNRILPRLN---LLADDSLADRVDEIRERLDEAQEAARFVQQFGNQLAKLEPIVSVLQsdpE 934
Cdd:TIGR02168 734 DLARLEAEVEQLEERIAQLSKELTELEaeiEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELR---A 810
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 935 QFEQLKEDYAYSQQMQRDARQQAFALTEVVQrrahfsysDSAEMLSGNSDLNEKLRERLEQAEAERTRAREALRGHAAQL 1014
Cdd:TIGR02168 811 ELTLLNEEAANLRERLESLERRIAATERRLE--------DLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNER 882
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1015 SQYNQVLASLKSSYDTKKELLNDLQRELQDIgvradsgaeERARIRRDELHAQLsnnrsrRNQLEKAltfcEAEMDNLTR 1094
Cdd:TIGR02168 883 ASLEEALALLRSELEELSEELRELESKRSEL---------RRELEELREKLAQL------ELRLEGL----EVRIDNLQE 943
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*..
gi 1882396408 1095 KLRKLERDYFEMREQVVTAKAGwcavmrmvKDNGVERRLHR--RELAYLSADDLRSM 1149
Cdd:TIGR02168 944 RLSEEYSLTLEEAEALENKIED--------DEEEARRRLKRleNKIKELGPVNLAAI 992
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
500-1435 |
9.29e-13 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 73.41 E-value: 9.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 500 ELLREGVDQRHLAEQVQPLRMRLSELEQRLREQQEAERLLADfckrqgknfDIDELEALHQELEARIASLS-DSVSNARE 578
Cdd:COG4913 275 EYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEA---------RLDALREELDELEAQIRGNGgDRLEQLER 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 579 ERMALRQEQEQLQSRIQSLMQR-APVWLAAQNSLNQLSEQCGEAFSSSQDVTEYLQQLLEREREAIVERDEVGARKNAVD 657
Cdd:COG4913 346 EIERLERELEERERRRARLEALlAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELE 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 658 EEIERLSQPGGSEDQRL----NALAE---------RFGGVLLseiydDVSLEDAPYFSA---LYGPSRHAIVVPD--LSQ 719
Cdd:COG4913 426 AEIASLERRKSNIPARLlalrDALAEalgldeaelPFVGELI-----EVRPEEERWRGAierVLGGFALTLLVPPehYAA 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 720 VTEHlegltdcpedlyliegdpqsfddsvfsVDELEKAVVVkiadrqwrysRFPEVPLFGRAARESRieslhAEREVLSE 799
Cdd:COG4913 501 ALRW---------------------------VNRLHLRGRL----------VYERVRTGLPDPERPR-----LDPDSLAG 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 800 RfatLSFDVqktqrlhQAFSRFIGSHLAvafesdpeaeiRQLNSRRVELERALSNHendnqQQRIQFE-QAKEGVTA--- 875
Cdd:COG4913 539 K---LDFKP-------HPFRAWLEAELG-----------RRFDYVCVDSPEELRRH-----PRAITRAgQVKGNGTRhek 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 876 -LNRILPRLNLLADDSlADRVDEIRERLDEAQEAARFVQQfgnQLAKLEPIVSVLQSDPEQFEQLkEDYAYSQQmqrDAR 954
Cdd:COG4913 593 dDRRRIRSRYVLGFDN-RAKLAALEAELAELEEELAEAEE---RLEALEAELDALQERREALQRL-AEYSWDEI---DVA 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 955 QQAFALTEVVQRRahfsysdsAEMLSGNSDLnEKLRERLEQAEAERTRAREALRghaaqlsQYNQVLASLKSSYDTKKEL 1034
Cdd:COG4913 665 SAEREIAELEAEL--------ERLDASSDDL-AALEEQLEELEAELEELEEELD-------ELKGEIGRLEKELEQAEEE 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1035 LNDLQRELQDIGVRADSGAEERARIRRDELHAQLSNNRSRRNqLEKALTFCEAEMDNLTRKLRKLERDYfemreqvvtak 1114
Cdd:COG4913 729 LDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELREN-LEERIDALRARLNRAEEELERAMRAF----------- 796
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1115 agwcavmrmvkdngveRRLHRRELAYLSADdlrsmsdkalgalrlaVADNEHLRDVLRlsedpkrperkiqffvavyqhl 1194
Cdd:COG4913 797 ----------------NREWPAETADLDAD----------------LESLPEYLALLD---------------------- 822
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1195 reRIRQDiirtddpveaieqmeiELSRLTEELtsREQKLAISSRSVANI---IRKTIQREQNRIRMLNQGLQNVSFGQ-- 1269
Cdd:COG4913 823 --RLEED----------------GLPEYEERF--KELLNENSIEFVADLlskLRRAIREIKERIDPLNDSLKRIPFGPgr 882
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1270 ----VNSVRLNVNVRETHAMLLDVLSeqheqHQDLFNSN-RLTFSEALAKLYQRL---NPQIDMGQRtpqtigEELLDYR 1341
Cdd:COG4913 883 ylrlEARPRPDPEVREFRQELRAVTS-----GASLFDEElSEARFAALKRLIERLrseEEESDRRWR------ARVLDVR 951
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1342 NYLEMEVEVNRGSDG---WLRAESGALSTGE-------AIGtgmSILVMVVQSWEDESRRLrgkdispcRLLFLDEA-AR 1410
Cdd:COG4913 952 NHLEFDAEEIDREDGeevETYSSSGGKSGGEkqklayfILA---AALAYQLGLEGRGRPSF--------RTVVLDEAfSK 1020
|
970 980
....*....|....*....|....*
gi 1882396408 1411 LDARSIATLFELCERLQMQLIIAAP 1435
Cdd:COG4913 1021 MDEEFARRALRLFKELGLQLLIATP 1045
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
348-1114 |
4.40e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.24 E-value: 4.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 348 EKIERYEADLDELQVRLEEQNEVVAEAIErQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAI--QYNQAIAALNR 425
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQ-QLERLRREREKAERYQALLKEKREYEGYELLKEKEALerQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 426 AKElcHLPDLTADSAAewletfQAKELEATEKMLSLEQKMSMAQTAHSQFEQAYQLVvAINGPLARNEawDVARELLREg 505
Cdd:TIGR02169 249 LEE--ELEKLTEEISE------LEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIG-ELEAEIASLE--RSIAEKERE- 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 506 vdQRHLAEQVQPLRMRLSELEQR---LREQQEAERLLadfcKRQGKNfDIDELEALHQELEARIASLSDSVSNAREERMA 582
Cdd:TIGR02169 317 --LEDAEERLAKLEAEIDKLLAEieeLEREIEEERKR----RDKLTE-EYAELKEELEDLRAELEEVDKEFAETRDELKD 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 583 LRQEQEQLQSRIQSLmqrapvwlaaQNSLNQLSEQCGEAFSSSQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEIER 662
Cdd:TIGR02169 390 YREKLEKLKREINEL----------KRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 663 LSQPGGSEDQRLNALAERFGGV------LLSEIYD-----DVSLEDAPYFSA---LYGPSRHAIV--VPDLSQVTEHLEG 726
Cdd:TIGR02169 460 LAADLSKYEQELYDLKEEYDRVekelskLQRELAEaeaqaRASEERVRGGRAveeVLKASIQGVHgtVAQLGSVGERYAT 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 727 ltdcpedlyLIEGDPQSFDDSVFSVDELEKAVVVKIADRQwRYSRFPEVPLfGRAARESRIESLHAEREVLSERFATLSF 806
Cdd:TIGR02169 540 ---------AIEVAAGNRLNNVVVEDDAVAKEAIELLKRR-KAGRATFLPL-NKMRDERRDLSILSEDGVIGFAVDLVEF 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 807 DvqktQRLHQAFSRFIGSHLAVafeSDPEAEIRQL-NSRRVELE--------------RALSNHENDNQQQRIQFEQAKE 871
Cdd:TIGR02169 609 D----PKYEPAFKYVFGDTLVV---EDIEAARRLMgKYRMVTLEgelfeksgamtggsRAPRGGILFSRSEPAELQRLRE 681
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 872 GVTALNRILprlnlladDSLADRVDEIRERLDEA-QEAARFVQQFGNQLAKLEPIVSVLQSDPEQFEQLKEDYAYSQQMQ 950
Cdd:TIGR02169 682 RLEGLKREL--------SSLQSELRRIENRLDELsQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 951 RDARQQAFALTEVVQRRAHFSYSDSAEMLSGNSDLN----EKLRERLEQAEAERTRAREALRGHAAQLSQYNQVLASLKS 1026
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHKLEEALNDLEARLShsriPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK 833
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1027 SYDTKKELLNDLQRELQDIGVRADSGaeeraRIRRDELHAQLSNNRSRRNQLEKALTFCEAEMDNLTRKLRKLERDYFEM 1106
Cdd:TIGR02169 834 EIQELQEQRIDLKEQIKSIEKEIENL-----NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908
|
....*...
gi 1882396408 1107 REQVVTAK 1114
Cdd:TIGR02169 909 EAQIEKKR 916
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
339-601 |
6.71e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.70 E-value: 6.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 339 LVQTALRQQEKIERYEADLDELQVRLEEQNEVVAEAIERQeenearaeaaelevDELKSQLADYQQALDVQQTRAIQYNQ 418
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEE--------------KALLKQLAALERRIAALARRIRALEQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 419 AIAALNRAkelchLPDLTADSAAewLETFQAKELEATEKMLSLEQKMSmaqtahsqfEQAYQLVVaingpLARNEAWDVA 498
Cdd:COG4942 77 ELAALEAE-----LAELEKEIAE--LRAELEAQKEELAELLRALYRLG---------RQPPLALL-----LSPEDFLDAV 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 499 RELLREGVDQRHLAEQVQPLRMRLSELEQRLREQQEAERLLADFCKRQGKnfDIDELEALHQELEARIASLSDSVSNARE 578
Cdd:COG4942 136 RRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEE--ERAALEALKAERQKLLARLEKELAELAA 213
|
250 260
....*....|....*....|...
gi 1882396408 579 ERMALRQEQEQLQSRIQSLMQRA 601
Cdd:COG4942 214 ELAELQQEAEELEALIARLEAEA 236
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
835-1256 |
4.40e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.94 E-value: 4.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 835 EAEIRQLNSRRVELERALSNHENDNQQQRIQFEQAKEGVTALNRILPRLNLLADDSLADRVDEIRERLDEAQEAARFVQQ 914
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 915 FGNQLAKLEPIVSVLQSDPEQFEQLKEDYAYSQQMQRDARQQAFALTEVVQRRAHFSYSDSAEMLSGNSDLNEkLRERLE 994
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEE-LEEAEE 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 995 QAEAERTRAREALRGHAAQLSQYNQVLASLKSSYDTKKELLNDLQRELQDIGVRADSGAEERARIR--RDELHAQLSNNR 1072
Cdd:COG1196 411 ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEaaLAELLEELAEAA 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1073 SRRNQLEKALT------------FCEAEMDNLTRKLRKLERDYFEMREQVVTAKAGWC--------AVMRMVKDNGVERR 1132
Cdd:COG1196 491 ARLLLLLEAEAdyegflegvkaaLLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALqnivveddEVAAAAIEYLKAAK 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1133 LHRRELAYLSADDLRSMSDKALgaLRLAVADNEHLRDVLRLSEDPKRPERKIQFFVAVYQHLRERIRQDIIRTDDPVEAI 1212
Cdd:COG1196 571 AGRATFLPLDKIRARAALAAAL--ARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRE 648
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 1882396408 1213 EQMEIELSRLTEELTSREQKLAISSRSVANIIRKTIQREQNRIR 1256
Cdd:COG1196 649 VTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE 692
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
306-663 |
9.21e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 9.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 306 QYKHVDMARELAEHNGA-EGDLEADYQAASDHLNLVQTALRQQEKIERYEADLDELQVRLEEQNEVVAEAIERQEENEAR 384
Cdd:TIGR02169 638 KYRMVTLEGELFEKSGAmTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRK 717
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 385 AEAAELEVDELKSQLADYQQALDVQQTRAIQYNQAIAALNRakELCHLpdltadsaAEWLETFQAKELEATEKMLSLEQK 464
Cdd:TIGR02169 718 IGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS--ELKEL--------EARIEELEEDLHKLEEALNDLEAR 787
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 465 MSmaqtaHSQFEQAYQLVVAINGPLARNEAW--DVARELLREGVDQRHLAEQVQPLRMRLSELEQRLREQQEAERLLadf 542
Cdd:TIGR02169 788 LS-----HSRIPEIQAELSKLEEEVSRIEARlrEIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL--- 859
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 543 ckrqgkNFDIDELEALHQELEARIASLSDSVSNAREERMALRQEQEQLQSRIQSLmqRAPVWLAAQNsLNQLSEQCGEAF 622
Cdd:TIGR02169 860 ------NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL--EAQIEKKRKR-LSELKAKLEALE 930
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1882396408 623 SSSQDVTEYLQQLLEREREAIVERDeVGARKNAVDEEIERL 663
Cdd:TIGR02169 931 EELSEIEDPKGEDEEIPEEELSLED-VQAELQRVEEEIRAL 970
|
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
8-53 |
1.57e-06 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 46.82 E-value: 1.57e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1882396408 8 RSLTLINWNGFFARTFDLDELVTTL-SGGNGAGKSTTMAAFVTALIP 53
Cdd:pfam13555 2 TRLQLINWGTFDGHTIPIDPRGNTLlTGPSGSGKSTLLDAIQTLLVP 48
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
520-1256 |
2.30e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 2.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 520 MRLSELEQRLREQQEAERLLADFCKR-----QGKNFDIDELEALHQELEARIA-------SLSDSVSNAREERMALRQEQ 587
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEEltaelQELEEKLEELRLEVSELEEEIEelqkelyALANEISRLEQQKQILRERL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 588 EQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEAFSSSQDVTEYLQQLLEREREAIVERDEvgaRKNAVDEEIERLSQPG 667
Cdd:TIGR02168 312 ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELES---RLEELEEQLETLRSKV 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 668 GSEDQRLNALAERFG--GVLLSEIYDDVSLEDAPYFSALYGPSRHAI--VVPDLSQVTEHLEGLTDCPEDLyliegdpqs 743
Cdd:TIGR02168 389 AQLELQIASLNNEIErlEARLERLEDRRERLQQEIEELLKKLEEAELkeLQAELEELEEELEELQEELERL--------- 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 744 fddsVFSVDELEKAVVVKIADRQWRYSRFPEVplfgraarESRIESLHAEREVLSERFATLSFDVQKTQRLHQAFSRfig 823
Cdd:TIGR02168 460 ----EEALEELREELEEAEQALDAAERELAQL--------QARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGV--- 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 824 shLAVAFESDPEAEIrqlnsrrvELERALSnhENDNQQQRIQFEQAKEGVTAL-NRILPRLNLLADDSLADRvdEIRERL 902
Cdd:TIGR02168 525 --LSELISVDEGYEA--------AIEAALG--GRLQAVVVENLNAAKKAIAFLkQNELGRVTFLPLDSIKGT--EIQGND 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 903 DEAQEAARFVQQFGNQLAKLEPIVSVLQSDPEQFEQLKEDYAYSQQMQRDARQQAFALT---EVVQRRAHFSYSDSAEml 979
Cdd:TIGR02168 591 REILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTldgDLVRPGGVITGGSAKT-- 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 980 sGNSDLN-----EKLRERLEQAEAERTRAREALRGHAAQLSQYNQVLASLKSSYDTKKELLNDLQRELQDIGVRADSGAE 1054
Cdd:TIGR02168 669 -NSSILErrreiEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1055 ERARIRRD--ELHAQLSNNRSRRNQLEKALTFCEAEMDNLTRKLRKLERDYFEMREQVVTAKAGWCAVMRMVKDNGVERR 1132
Cdd:TIGR02168 748 RIAQLSKEltELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE 827
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1133 LHRRELAYLSadDLRSMSDKALGALRLAVADNEHLRDVLRLSEDpkRPERKIQFFVAVYQHLRERIRQDIIRTDDPVEAI 1212
Cdd:TIGR02168 828 SLERRIAATE--RRLEDLEEQIEELSEDIESLAAEIEELEELIE--ELESELEALLNERASLEEALALLRSELEELSEEL 903
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 1882396408 1213 EQMEIELSRLTEELTSREQKLAiSSRSVANIIRKTIQREQNRIR 1256
Cdd:TIGR02168 904 RELESKRSELRRELEELREKLA-QLELRLEGLEVRIDNLQERLS 946
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
987-1293 |
5.35e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 5.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 987 EKLRERLEQAEAERTRAREALRGHAAQLSQYNQVLASLKSSYDTKKELLNDLQRELQDIGVRAdSGAEERARIRRDELH- 1065
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI-SRLEQQKQILRERLAn 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1066 ---------AQLSNNRSRR-------NQLEKALTFCEAEMDNLTRKLRKLERDYFEMREQVVTAKAGWCAVMRMVKDNGV 1129
Cdd:TIGR02168 314 lerqleeleAQLEELESKLdelaeelAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1130 ERRLHRRELAYLSADdlrsmsdkalgALRLAVADNEHLRDVLRLSEDPKRPERKiqffvavyqHLRERIRQDIIRTDDPV 1209
Cdd:TIGR02168 394 QIASLNNEIERLEAR-----------LERLEDRRERLQQEIEELLKKLEEAELK---------ELQAELEELEEELEELQ 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1210 EAIEQMEIELSRLTEELTSREQKLaissrsvaNIIRKTIQREQNRIRMLNQGLQNVSfGQVNSVRLNVNVRETHAMLLDV 1289
Cdd:TIGR02168 454 EELERLEEALEELREELEEAEQAL--------DAAERELAQLQARLDSLERLQENLE-GFSEGVKALLKNQSGLSGILGV 524
|
....
gi 1882396408 1290 LSEQ 1293
Cdd:TIGR02168 525 LSEL 528
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
341-665 |
5.44e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 5.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 341 QTALRQQEKIERYEADLDELQVRLEEQNEVVAEAIERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYNQAI 420
Cdd:TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 421 AALNRAkelchLPDLTAD--SAAEWLETFQAKELEATEKMLSLEQKMSMAQTAHSQFEQAYQLV------VAINGPLARN 492
Cdd:TIGR02168 750 AQLSKE-----LTELEAEieELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELraeltlLNEEAANLRE 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 493 EAWDVARELLREGVDQRHLAEQVQPLRMRLSELEQRLREQQEAERLLADfcKRQGKNFDIDELEALHQELEARIASLSDS 572
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES--ELEALLNERASLEEALALLRSELEELSEE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 573 VSNAREERMALRQE--------------QEQLQSRIQSLMQRapvwLAAQNSLN-QLSEQCGEAFSSSQDVTEYLQQLLE 637
Cdd:TIGR02168 903 LRELESKRSELRREleelreklaqlelrLEGLEVRIDNLQER----LSEEYSLTlEEAEALENKIEDDEEEARRRLKRLE 978
|
330 340 350
....*....|....*....|....*....|....*.
gi 1882396408 638 RERE--------AIVERDEVGARKNAVDEEIERLSQ 665
Cdd:TIGR02168 979 NKIKelgpvnlaAIEEYEELKERYDFLTAQKEDLTE 1014
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
882-1113 |
6.53e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 6.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 882 RLNLLADDSLADRVDEIRE---RLDEAQEAARFVQQfgnQLAKLEPIVSvlqsDPEQFEQLKEDYAYSQQMQRDAR---- 954
Cdd:COG4913 214 REYMLEEPDTFEAADALVEhfdDLERAHEALEDARE---QIELLEPIRE----LAERYAAARERLAELEYLRAALRlwfa 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 955 QQAFALTEVVQRRAHFSYSDSAEMLSGN----SDLNEKLRE-----------RLEQAEAERTRAREALRGHAAQLSQYNQ 1019
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLearlDALREELDEleaqirgnggdRLEQLEREIERLERELEERERRRARLEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1020 VLASLKSSYDTKKELLNDLQRELQDigvradsgAEERARIRRDELHAQLSNNRSRRNQLEKALTFCEAEMDNLTRKLRKL 1099
Cdd:COG4913 367 LLAALGLPLPASAEEFAALRAEAAA--------LLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNI 438
|
250
....*....|....
gi 1882396408 1100 ERDYFEMREQVVTA 1113
Cdd:COG4913 439 PARLLALRDALAEA 452
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
230-646 |
9.59e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.15 E-value: 9.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 230 KAFQDMEAALRENRMTLEA-IRVTQSDRDLFKHLISEATNYV----AADYMRHANERRVHLDKALEFRRELHTSRQQLAA 304
Cdd:COG4717 91 AELQEELEELEEELEELEAeLEELREELEKLEKLLQLLPLYQeleaLEAELAELPERLEELEERLEELRELEEELEELEA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 305 EQYKHVDMARELAEHNGAE-----GDLEADYQAASDHLNLVQTALRQ-QEKIERYEADLDELQVRLEEQNEvvAEAIERQ 378
Cdd:COG4717 171 ELAELQEELEELLEQLSLAteeelQDLAEELEELQQRLAELEEELEEaQEELEELEEELEQLENELEAAAL--EERLKEA 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 379 EENEARAEAAELEVDELKSQLADYQQALDVQQTRA--------IQYNQAIAALNRAKELCHLPDLTADSAAEWLETFQAK 450
Cdd:COG4717 249 RLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLgllallflLLAREKASLGKEAEELQALPALEELEEEELEELLAAL 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 451 ELEATEKMLSLEQKMSMAQTAHSQFEQAYQLVVAingpLARNEAWDVARELLRE-GVDQRHLAEQVQPLRMRLSELEQRL 529
Cdd:COG4717 329 GLPPDLSPEELLELLDRIEELQELLREAEELEEE----LQLEELEQEIAALLAEaGVEDEEELRAALEQAEEYQELKEEL 404
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 530 REQQEAERLLADFCKRQGKNFDIDELEALHQELEARIASLSDSVSNAREERMALRQEQEQLQS--RIQSLMQRapvwlaA 607
Cdd:COG4717 405 EELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEdgELAELLQE------L 478
|
410 420 430
....*....|....*....|....*....|....*....
gi 1882396408 608 QNSLNQLSEQCGEAfsssqDVTEYLQQLLEREREAIVER 646
Cdd:COG4717 479 EELKAELRELAEEW-----AALKLALELLEEAREEYREE 512
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
392-1110 |
1.22e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 392 VDELKSQLADYQQAldvqqtraiqYNQAIAALNRAKELCHLPDLTADSAAEWLetfQAKELEATEKMLSLEQkmsmAQTA 471
Cdd:COG4913 227 ADALVEHFDDLERA----------HEALEDAREQIELLEPIRELAERYAAARE---RLAELEYLRAALRLWF----AQRR 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 472 HSQFEQAY-QLVVAINGPLARNEAWDVARELLREGVDQRHLA------EQVQPLRMRLSELEQRLREQQEAERLLADFCK 544
Cdd:COG4913 290 LELLEAELeELRAELARLEAELERLEARLDALREELDELEAQirgnggDRLEQLEREIERLERELEERERRRARLEALLA 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 545 RQG--KNFDIDELEALHQELEARIASLSDSVSNAREER-------MALRQEQEQLQSRIQSLMQRA---PVWLAAQnsLN 612
Cdd:COG4913 370 ALGlpLPASAEEFAALRAEAAALLEALEEELEALEEALaeaeaalRDLRRELRELEAEIASLERRKsniPARLLAL--RD 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 613 QLSEQCGEAFSSSQDVTEYLQ-QLLEREREAIVER-----------DEvgARKNAVDEEIERLSQPGGSEDQRLNALAER 680
Cdd:COG4913 448 ALAEALGLDEAELPFVGELIEvRPEEERWRGAIERvlggfaltllvPP--EHYAAALRWVNRLHLRGRLVYERVRTGLPD 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 681 FGGVLLSE--IYDDVSLEDAPYFS---ALYGPSRHAIVVPDLSQVTEHLEGLT-DCpedlyLIEGDPQSFDdsvfsvdel 754
Cdd:COG4913 526 PERPRLDPdsLAGKLDFKPHPFRAwleAELGRRFDYVCVDSPEELRRHPRAITrAG-----QVKGNGTRHE--------- 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 755 ekavvvkIADRQWRYSRfpevPLFGRAAREsRIESLHAEREVLSERFATLSFDVQKTQRLHQAFSRFIGSHLAVAFESDP 834
Cdd:COG4913 592 -------KDDRRRIRSR----YVLGFDNRA-KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWD 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 835 EAEIRQLNSRRVELERALSNHENDN---QQQRIQFEQAKEGVTALNRILPRLNLLAdDSLADRVDEIRERLDEAQEAARF 911
Cdd:COG4913 660 EIDVASAEREIAELEAELERLDASSddlAALEEQLEELEAELEELEEELDELKGEI-GRLEKELEQAEEELDELQDRLEA 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 912 VQQFGnqlaklepivsvlqsDPEQFEQLKEDYAysQQMQRDARQQAFaltevvqrrahfsysdsaemlsgnsdlnEKLRE 991
Cdd:COG4913 739 AEDLA---------------RLELRALLEERFA--AALGDAVERELR----------------------------ENLEE 773
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 992 RLEQAEAERTRAREALRGhaaQLSQYNQVLASLKSSYDTKKELLNDLQRELQdigvradsgaeeraRIRRDELHAqlsnn 1071
Cdd:COG4913 774 RIDALRARLNRAEEELER---AMRAFNREWPAETADLDADLESLPEYLALLD--------------RLEEDGLPE----- 831
|
730 740 750
....*....|....*....|....*....|....*....
gi 1882396408 1072 rsRRNQLEKALTfcEAEMDNLTRKLRKLERDYFEMREQV 1110
Cdd:COG4913 832 --YEERFKELLN--ENSIEFVADLLSKLRRAIREIKERI 866
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
332-1102 |
1.50e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 332 AASDHLNLVQTALRQQEKIER----YEADLDELQVRLEEQNEVVAEA----------IERQEEneARAEAAELEVDELKS 397
Cdd:TIGR02169 224 EGYELLKEKEALERQKEAIERqlasLEEELEKLTEEISELEKRLEEIeqlleelnkkIKDLGE--EEQLRVKEKIGELEA 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 398 QLADYQQALDVQQTRAiqyNQAIAALNRAKELCHLPDLTADSAAEWLETFQAKELEATEKMLSLEQKM--------SMAQ 469
Cdd:TIGR02169 302 EIASLERSIAEKEREL---EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELedlraeleEVDK 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 470 TAHSQFEQAYQLVVAINGplARNEAWDVARELLREGVDQRHLAEQVQPLRMRLSELEQRLREQQEAERLLAdfckrqgkn 549
Cdd:TIGR02169 379 EFAETRDELKDYREKLEK--LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKA--------- 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 550 fdiDELEALHQELEariaSLSDSVSNAREERMALRQEQEQLQSRIQSLMQRapvwLAAQNSLNQLSEQCGEAFSSSQDVT 629
Cdd:TIGR02169 448 ---LEIKKQEWKLE----QLAADLSKYEQELYDLKEEYDRVEKELSKLQRE----LAEAEAQARASEERVRGGRAVEEVL 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 630 E--------YLQQLLE-REREAIVERDEVGARKNAV---DEE-----IERLSQPGGSEDQRLNALAERFGGVLLSEIYDD 692
Cdd:TIGR02169 517 KasiqgvhgTVAQLGSvGERYATAIEVAAGNRLNNVvveDDAvakeaIELLKRRKAGRATFLPLNKMRDERRDLSILSED 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 693 VSLE--------DAPYFSALYGPSRHAIVVPDLSQVTEHLEGLTdcpedLYLIEGDPqsfddsvfsvdeLEKAVVVKIAD 764
Cdd:TIGR02169 597 GVIGfavdlvefDPKYEPAFKYVFGDTLVVEDIEAARRLMGKYR-----MVTLEGEL------------FEKSGAMTGGS 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 765 RQWRYSRFPEVPLFGRAARES-RIESLHAEREVLSERFATLSfdvqktQRLHQAFSRFigshlavafeSDPEAEIRQLNS 843
Cdd:TIGR02169 660 RAPRGGILFSRSEPAELQRLReRLEGLKRELSSLQSELRRIE------NRLDELSQEL----------SDASRKIGEIEK 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 844 RRVELERALSNHENDNQQQRIQFEQAKEGVTALNRILPRLNLLADDSLADrVDEIRERLD--EAQEAARFVQQFGNQLAK 921
Cdd:TIGR02169 724 EIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEED-LHKLEEALNdlEARLSHSRIPEIQAELSK 802
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 922 LEPIVSVLQSDPEQFEQLKEDYAYSQQMQRDARQqafalTEVVQRRahfsysdsaemlsgnsDLNEKLRERLEQAEAERT 1001
Cdd:TIGR02169 803 LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ-----ELQEQRI----------------DLKEQIKSIEKEIENLNG 861
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1002 RARE---ALRGHAAQLSQYNQVLASLKSSYDTKKELLNDLQRELQDIgvradSGAEERARIRRDELHAQLSNNRSRRNQL 1078
Cdd:TIGR02169 862 KKEEleeELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL-----EAQIEKKRKRLSELKAKLEALEEELSEI 936
|
810 820 830
....*....|....*....|....*....|
gi 1882396408 1079 EKALT------FCEAEMDNLTRKLRKLERD 1102
Cdd:TIGR02169 937 EDPKGedeeipEEELSLEDVQAELQRVEEE 966
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
214-680 |
2.45e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.88 E-value: 2.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 214 TRSLRDYLLPENSGVRKAFQDMEAALRENRMTLEAirvTQSDRDLFKHLISEATNYVaadyMRHANERRVHLDKALEFRR 293
Cdd:PRK02224 235 TRDEADEVLEEHEERREELETLEAEIEDLRETIAE---TEREREELAEEVRDLRERL----EELEEERDDLLAEAGLDDA 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 294 ELHTSRQQLAAEQYKHVDMARELAEHNGAEGDLEADYQAASDH-LNLVQTALRQQEKIERYEADLDELQVRLEEQNEVVA 372
Cdd:PRK02224 308 DAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDaDDLEERAEELREEAAELESELEEAREAVEDRREEIE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 373 EAIERQEENEARAEAAELEVDELKSQLADYQQALD-----VQQTRA--------IQYNQAIAALNRAKElCHLPdLTADS 439
Cdd:PRK02224 388 ELEEEIEELRERFGDAPVDLGNAEDFLEELREERDelrerEAELEAtlrtarerVEEAEALLEAGKCPE-CGQP-VEGSP 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 440 AAEWLETFQAKELEATEKMLSLEQKMSMAQTAHSQFEQAYQLVVAINGPLARNEAWDVARELLREGVDQRhlAEQVQPLR 519
Cdd:PRK02224 466 HVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEK--RERAEELR 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 520 MRLSELEQRLREQQEA---ERLLADFCKRQGKNFDiDELEALHQELEA--RIASLSDSVSNAREERMALRQEQEQLQS-- 592
Cdd:PRK02224 544 ERAAELEAEAEEKREAaaeAEEEAEEAREEVAELN-SKLAELKERIESleRIRTLLAAIADAEDEIERLREKREALAEln 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 593 -----RIQSLMQRAPVwLAAQNSLNQLSeqcgEAFSSSQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLSqpg 667
Cdd:PRK02224 623 derreRLAEKRERKRE-LEAEFDEARIE----EAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELE--- 694
|
490
....*....|...
gi 1882396408 668 gSEDQRLNALAER 680
Cdd:PRK02224 695 -ELRERREALENR 706
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
8-428 |
2.77e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 2.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 8 RSLTLINWNGFFAR-TFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLL--------HFRNTTEA----GATSGSRD 74
Cdd:COG4913 4 QRLQLINWGTFDGVhTIDFDGRGTLLTGDNGSGKSTLLDAIQTLLVPAKRPRfnkaandaGKSDRTLLsyvrGKYGSERD 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 75 KGLHGK--LKAGVCYS---MLDTINSRHQRVVVGVRLQQVAGRDRKVDIKP-FAIQGLPMSVqptqlvtETLNERqARVL 148
Cdd:COG4913 84 EAGTRPvyLRPGDTWSaiaATFANDGSGQTVTLAQVFWLKGDASSLGDVKRfFVIADGPLDL-------EDFEEF-AHGF 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 149 PLNELKDKLeamEGVQFKQFNSITDYhslmfdlgiiARRLRSA--SDRSKFYRLieasLYGGIS----SAITRSLRDYLL 222
Cdd:COG4913 156 DIRALKARL---KKQGVEFFDSFSAY----------LARLRRRlgIGSEKALRL----LHKTQSfkpiGDLDDFVREYML 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 223 PEnsgvRKAFQDMEAALrENRMTL----EAIRVTQSDRDLFKHLISEATNYVAADymrhanERRVHLDKALEfRRELHTS 298
Cdd:COG4913 219 EE----PDTFEAADALV-EHFDDLerahEALEDAREQIELLEPIRELAERYAAAR------ERLAELEYLRA-ALRLWFA 286
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 299 RQQLAAEQYKHVDMARELAEHNGAEGDLEADYQAASDHLNLVQTALRQQ--EKIERYEADLDELQVRLEEQNEVVAEAIE 376
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNggDRLEQLEREIERLERELEERERRRARLEA 366
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1882396408 377 RQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQ-YNQAIAALNRAKE 428
Cdd:COG4913 367 LLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEaLAEAEAALRDLRR 419
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
228-637 |
3.58e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 3.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 228 VRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLISEATNYVAADYMRHANERRVHLDKALEFRRELHTSRQQLAAEQY 307
Cdd:TIGR02168 703 LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA 782
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 308 KHVDMARELAEHNGAEGDLEADYQAASDHLNLVQ-TALRQQEKIERYEADLDELQVRLEEQNEVVAEAIERQEENEARAE 386
Cdd:TIGR02168 783 EIEELEAQIEQLKEELKALREALDELRAELTLLNeEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE 862
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 387 AAELEVDELKSQLADYQQALDVQQtraiqynQAIAALNRAkelchlpdltadsaaewLETFQAKELEATEKMLSLEQKMS 466
Cdd:TIGR02168 863 ELEELIEELESELEALLNERASLE-------EALALLRSE-----------------LEELSEELRELESKRSELRRELE 918
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 467 MAQTAHSQFEqayqlvvaingplarneawdvarellregvdqrhlaEQVQPLRMRLSELEQRLREQQEAErlladfckrq 546
Cdd:TIGR02168 919 ELREKLAQLE------------------------------------LRLEGLEVRIDNLQERLSEEYSLT---------- 952
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 547 gknfdIDELEALHQELEAriaslsdsvsnareERMALRQEQEQLQSRIQSLmqrAPVWLAAQNSLNQLSEQCGEAFSSSQ 626
Cdd:TIGR02168 953 -----LEEAEALENKIED--------------DEEEARRRLKRLENKIKEL---GPVNLAAIEEYEELKERYDFLTAQKE 1010
|
410
....*....|.
gi 1882396408 627 DVTEYLQQLLE 637
Cdd:TIGR02168 1011 DLTEAKETLEE 1021
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
229-665 |
5.52e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.01 E-value: 5.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 229 RKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLISEATNYVAADYMRHANERRV--HLDKALEFRRELHTSRQQLAAEQ 306
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELeeLAEELLEALRAAAELAAQLEELE 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 307 YKHVDMARELAEHNGAEGDLEADYQAA-SDHLNLVQTALRQQEKIERYEADLDELQVRLEEQNEVVAEAIERQEENEARA 385
Cdd:COG1196 407 EAEEALLERLERLEEELEELEEALAELeEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 386 EAAELEVDELKSQLADYQ-------------------QALDVQQTRAIQYNQAI--AALNRAKELCHLPDLTADSAAEWL 444
Cdd:COG1196 487 AEAAARLLLLLEAEADYEgflegvkaalllaglrglaGAVAVLIGVEAAYEAALeaALAAALQNIVVEDDEVAAAAIEYL 566
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 445 EtfQAKELEATEKMLSLEQKMSMAQTAHSQFEQAYQLVVAINGPLARNEAWDVARELLREGVDQRHLAEQ---------- 514
Cdd:COG1196 567 K--AAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAalrravtlag 644
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 515 ---VQPLRMRLSELEQRLREQQEAERLLADFCKRQGKNFDIDELEALHQELEARIASLSDSVSNAREERMALRQEQEQLQ 591
Cdd:COG1196 645 rlrEVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE 724
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 592 SRIQSLMQRAPVWLAAQNSLNQLSEQCGEAFSSSQDVTEYLQQ---LLERERE--------AIVERDEVGARKNAVDEEI 660
Cdd:COG1196 725 ALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELEReleRLEREIEalgpvnllAIEEYEELEERYDFLSEQR 804
|
....*
gi 1882396408 661 ERLSQ 665
Cdd:COG1196 805 EDLEE 809
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
838-1185 |
6.22e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 6.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 838 IRQLNSRRVELERalsnhendnqqQRIQFEQAKEGVTALNRILPRLNLLADDSLADRVDEIRERLDEAQEAArfvQQFGN 917
Cdd:COG1196 195 LGELERQLEPLER-----------QAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAEL---EELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 918 QLAKLEpivSVLQSDPEQFEQLKEDYaysQQMQRDARQQAFALTEVVQRRAHfsysdsaemlsgNSDLNEKLRERLEQAE 997
Cdd:COG1196 261 ELAELE---AELEELRLELEELELEL---EEAQAEEYELLAELARLEQDIAR------------LEERRRELEERLEELE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 998 AERTRAREALRGHAAQLSQYNQVLASLKSSYDTKKELLNDLQRELQDIGVRADSGAEERARIRRDELHAQlsnnrSRRNQ 1077
Cdd:COG1196 323 EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL-----RAAAE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1078 LEKALTFCEAEMDNLTRKLRKLERDYFEMREQVVTAKAgwcavmrmvKDNGVERRLHRRELAYLSADDLRSMSDKALGAL 1157
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEE---------EEEEEEEALEEAAEEEAELEEEEEALLELLAEL 468
|
330 340
....*....|....*....|....*...
gi 1882396408 1158 RLAVADNEHLRDVLRLSEDPKRPERKIQ 1185
Cdd:COG1196 469 LEEAALLEAALAELLEELAEAAARLLLL 496
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
350-1100 |
1.77e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 350 IERYEADLDELQVRLEEQNEVVaeaiERQeenearAEAAELEVDELKSQLADYQQALDVQQTRAIQYNQAIAAL-NRAKE 428
Cdd:pfam15921 80 LEEYSHQVKDLQRRLNESNELH----EKQ------KFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLrNQLQN 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 429 LCHLPDLTADSAAEWLETFQAKELEATEKMLSLEQKMSMAQTAHSQFEQAYQLVVAINGPLA----RNEAWDVARELlre 504
Cdd:pfam15921 150 TVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMStmhfRSLGSAISKIL--- 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 505 gvdqRHLAEQVQPLRMRLSELEQRLREQQEAERLLADFCKRQGKnfdiDELEALHQELEARIASLSDSVSNAREERMALR 584
Cdd:pfam15921 227 ----RELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQ----DRIEQLISEHEVEITGLTEKASSARSQANSIQ 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 585 QEQE--QLQSRIQSLMQRAPVwLAAQNSLNQLSEQCGEAFSSSQDVTEYLQQLL----EREREAIVERDEVGARKNAVDE 658
Cdd:pfam15921 299 SQLEiiQEQARNQNSMYMRQL-SDLESTVSQLRSELREAKRMYEDKIEELEKQLvlanSELTEARTERDQFSQESGNLDD 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 659 EIERLsqpggsedqrlnaLAErfggvlLSEIYDDVSLEDAPYFSALYGPSRHAIVVpdlsqvtEHLEgltdcpedlylie 738
Cdd:pfam15921 378 QLQKL-------------LAD------LHKREKELSLEKEQNKRLWDRDTGNSITI-------DHLR------------- 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 739 gdpQSFDDSVFSVDELEKAVVVKIADRQWRYSRfPEVPLFGRAARESRIESLHAEREVLSERFATLSFDVQKTQRLHQAF 818
Cdd:pfam15921 419 ---RELDDRNMEVQRLEALLKAMKSECQGQMER-QMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESS 494
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 819 SRFIGSHLAVAFESD-----PEAEIRQLNSR---RVELERALSNHENDNQQQRIQFEQAKEGVTALNRILPRLNLLADDS 890
Cdd:pfam15921 495 ERTVSDLTASLQEKEraieaTNAEITKLRSRvdlKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENM 574
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 891 L-----------------ADRVDEIRERLDEAQEAARFVQQFGNQLAKLEPIVSVLqsdpeQFEQLKEDYAYSQQMQ--R 951
Cdd:pfam15921 575 TqlvgqhgrtagamqvekAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDL-----ELEKVKLVNAGSERLRavK 649
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 952 DARQQAFA-LTEVVQRRAHF-SYSDSAEMLSGN--------SDLNEKLRERLEQAEAERTRAREALRGHAAQLSQYNQVL 1021
Cdd:pfam15921 650 DIKQERDQlLNEVKTSRNELnSLSEDYEVLKRNfrnkseemETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVA 729
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1022 ASLKSSYDTKKELLNDLQRELQDIGVRADSGAEERARIR--RDELHAQLSNNRSRRNQLEKALTFCEAEMDNLTRKLRKL 1099
Cdd:pfam15921 730 MGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKeeKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANM 809
|
.
gi 1882396408 1100 E 1100
Cdd:pfam15921 810 E 810
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
777-1060 |
2.14e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 2.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 777 LFGRAARESRIESLHAEREVLSERFATLSFDVQKTQRLHQAFSRFIGSHLAVAfeSDPEAEIRQLNSRRVELERALSNHE 856
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRI--AALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 857 NDNQQQRIQFEQAKEGVTALNRILPRLNlladdsladRVDEIRERL--DEAQEAARFVQQFGnqlaklepivSVLQSDPE 934
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRLG---------RQPPLALLLspEDFLDAVRRLQYLK----------YLAPARRE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 935 QFEQLKEDYAYSQQMQRDARQQAFALTEVVQRrahfsysdsaemlsgnsdlNEKLRERLEQAEAERTRAREALRghaAQL 1014
Cdd:COG4942 151 QAEELRADLAELAALRAELEAERAELEALLAE-------------------LEEERAALEALKAERQKLLARLE---KEL 208
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1882396408 1015 SQYNQVLASLKSSYDTKKELLNDLQRELQDIGVRADSGAEERARIR 1060
Cdd:COG4942 209 AELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGK 254
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
499-957 |
2.61e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 2.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 499 RELLREGVDQRHLAEQVQPLRMRLSELEQRLREQQEAERLLADFCKRQGKNFDIDELEALHQELEARIASLSDSVSNARE 578
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 579 ERMALRQEQEQLQSRIQSLMQrapvwlaAQNSLNQLSEQCGEAFSSS-QDVTEYLQQLLEREREAIVERDEVGARKNAVD 657
Cdd:COG4717 154 RLEELRELEEELEELEAELAE-------LQEELEELLEQLSLATEEElQDLAEELEELQQRLAELEEELEEAQEELEELE 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 658 EEIERLSQPGGSEDQRLNALAERFGGVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQVTEHLE-GLTDCPEDLYL 736
Cdd:COG4717 227 EELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLArEKASLGKEAEE 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 737 IEGDPQSfddsvfsvDELEKAVVVKIADRQWRYSRFPEVPLFGRAARESRIESLHAEREVLSERFATLSFDVQKTQRLHQ 816
Cdd:COG4717 307 LQALPAL--------EELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAE 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 817 AFsrfigshlavafeSDPEAEIRQlnsrRVELERALSNHENDNQQQRIQFEQAKEGVTALnrilprLNLLADDSLADRVD 896
Cdd:COG4717 379 AG-------------VEDEEELRA----ALEQAEEYQELKEELEELEEQLEELLGELEEL------LEALDEEELEEELE 435
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1882396408 897 EIRERLDEAQEAARFVQQfgnQLAKLEPIVSVLQSDPEQFEQLKEDYAYSQQMQRDARQQA 957
Cdd:COG4717 436 ELEEELEELEEELEELRE---ELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWA 493
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
347-646 |
5.81e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 5.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 347 QEKIERYEADLDELQVRLEEQNEVVAEAIERQEENEARAeaaelevdELKSQLADYQQA-LDVQQTRAiqynqAIAALNR 425
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERR--------EALQRLAEYSWDeIDVASAER-----EIAELEA 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 426 AKELCHLPDLTADSAAEWLETFQAKELEATEKMLSLEQKMSMAQTAHSQFE---QAYQLVVAINGPLARNEAWDVARELL 502
Cdd:COG4913 676 ELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEeelDELQDRLEAAEDLARLELRALLEERF 755
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 503 REGVDQRHLAEQVQPLRMRLSELEQRL-REQQEAERLLADFCKRQgknfdidelealhqelEARIASLSDSVSNARE-ER 580
Cdd:COG4913 756 AAALGDAVERELRENLEERIDALRARLnRAEEELERAMRAFNREW----------------PAETADLDADLESLPEyLA 819
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1882396408 581 MALRQEQEQL---QSRIQSLMQRApvwlaaqnslnqlseqcgeafsSSQDVTEyLQQLLEREREAIVER 646
Cdd:COG4913 820 LLDRLEEDGLpeyEERFKELLNEN----------------------SIEFVAD-LLSKLRRAIREIKER 865
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
335-680 |
5.83e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.65 E-value: 5.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 335 DHLNLVQTALRQ-QEKIERYEADLDELQVRLEEQNEVVAEAIERQeenearaeaaeLEVDELKSQLADYQQALDVQQTRA 413
Cdd:PRK02224 206 ERLNGLESELAElDEEIERYEEQREQARETRDEADEVLEEHEERR-----------EELETLEAEIEDLRETIAETERER 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 414 IQYNQAIAALNRAKEL-----------CHLPDLTADSAAEWLETFQAKELEATEkmlSLEQKMSMAQTAHSQFEQayqlv 482
Cdd:PRK02224 275 EELAEEVRDLRERLEEleeerddllaeAGLDDADAEAVEARREELEDRDEELRD---RLEECRVAAQAHNEEAES----- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 483 vaingplarneawdvarelLREGVDQrhLAEQVQPLRMRLSELEQRLREQQEAERlladfcKRQGKnfdIDELEALHQEL 562
Cdd:PRK02224 347 -------------------LREDADD--LEERAEELREEAAELESELEEAREAVE------DRREE---IEELEEEIEEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 563 EARIASLSDSVSNAREERMALRQEQEQLQSRIQSLmqRAPVwLAAQNSLNQLSE--------QCGEAFSSSQDVtEYLQQ 634
Cdd:PRK02224 397 RERFGDAPVDLGNAEDFLEELREERDELREREAEL--EATL-RTARERVEEAEAlleagkcpECGQPVEGSPHV-ETIEE 472
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1882396408 635 LLEREREAIVERDEVGARKNAVDEEIERLSQPGGSEDqRLNALAER 680
Cdd:PRK02224 473 DRERVEELEAELEDLEEEVEEVEERLERAEDLVEAED-RIERLEER 517
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
835-1143 |
6.65e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 6.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 835 EAEIRQLNSRRVELERALsnhendnQQQRIQFEQAKEGVTALNRILPRLNLLADDSLADRVDEIRERLDEAQeaarfvqq 914
Cdd:TIGR02169 236 ERQKEAIERQLASLEEEL-------EKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELE-------- 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 915 fgNQLAKLEPIVSVLQSDPEQFE-QLKEDYAYSQQMQRDARQQAFALTEVVQRRAHFS--YSDSAEMLsgnsdlnEKLRE 991
Cdd:TIGR02169 301 --AEIASLERSIAEKERELEDAEeRLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTeeYAELKEEL-------EDLRA 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 992 RLEQAEAERTRAREALrghaaqlsqynqvlASLKSSYDTKKELLNDLQRELQDIGVRAdsgaeERARIRRDELHAQLSNN 1071
Cdd:TIGR02169 372 ELEEVDKEFAETRDEL--------------KDYREKLEKLKREINELKRELDRLQEEL-----QRLSEELADLNAAIAGI 432
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1882396408 1072 RSRRNQLEKALTFCEAEMDNLTRKLRKLERDYFEMREQVVTAKAgwcavmrmvKDNGVERRLH--RRELAYLSA 1143
Cdd:TIGR02169 433 EAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE---------EYDRVEKELSklQRELAEAEA 497
|
|
| Macoilin |
pfam09726 |
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 ... |
536-655 |
1.13e-03 |
|
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.
Pssm-ID: 462859 [Multi-domain] Cd Length: 670 Bit Score: 43.69 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 536 ERLLADFCKRQGknfDIDELEALHQELEARIASLSDSVSNAREERMALRQEQEQLQSRIQSLMQrapvwlaAQNSLNQLS 615
Cdd:pfam09726 398 VRLEQDIKKLKA---ELQASRQTEQELRSQISSLTSLERSLKSELGQLRQENDLLQTKLHNAVS-------AKQKDKQTV 467
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1882396408 616 EQCGEAFSSSQDVTEYLQQLLEREREAIVERDEVGARKNA 655
Cdd:pfam09726 468 QQLEKRLKAEQEARASAEKQLAEEKKRKKEEEATAARAVA 507
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
507-680 |
1.36e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 507 DQRHLAEQVQPLRMRLSELEQRLREQQEAERLLADfcKRQGKNFDIDELEALHQELEARIASLSDSVSNAREERMALRQE 586
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLK--QLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 587 QEQLQSRIQSLMQRA--------PVWLAAQNSLNQLS-------------EQCGEAFSSSQDVTEYLQQLLEREREAIV- 644
Cdd:COG4942 99 LEAQKEELAELLRALyrlgrqppLALLLSPEDFLDAVrrlqylkylaparREQAEELRADLAELAALRAELEAERAELEa 178
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1882396408 645 -------ERDEVGARKNAVDEEIERLSQPGGSEDQRLNALAER 680
Cdd:COG4942 179 llaeleeERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
781-1102 |
1.58e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 781 AARESRIESLHAEREVLSERFATLSFDVQKTQRLHQAFSRFIGSHLAVAFESDPEAEIRQLNSRRVELER---ALSNHEN 857
Cdd:COG4717 84 EEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEErleELRELEE 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 858 DNQQQRIQFEQAKEGVTALNRILPRLNLLADDSLADRVDEIRERLDEAQEAARFVQQFGNQLAKLEPIVSVLQSDPEQFE 937
Cdd:COG4717 164 ELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEE 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 938 QLKE-----------------------------------------DYAYSQQMQRDARQQAFALTEVVQRRA-------- 968
Cdd:COG4717 244 RLKEarlllliaaallallglggsllsliltiagvlflvlgllalLFLLLAREKASLGKEAEELQALPALEEleeeelee 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 969 -----HFSYSDSAEMLSGNSDLNEKLRERLEQAEAERTRAR-EALRGHAAQLSQYNQV--------LASLKSSYDTKKEL 1034
Cdd:COG4717 324 llaalGLPPDLSPEELLELLDRIEELQELLREAEELEEELQlEELEQEIAALLAEAGVedeeelraALEQAEEYQELKEE 403
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1882396408 1035 LNDLQRELQDIgvrADSGAEERARIRRDELHAQLSNNRSRRNQLEKALTFCEAEMDNLTRKLRKLERD 1102
Cdd:COG4717 404 LEELEEQLEEL---LGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEED 468
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
835-1234 |
1.88e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.89 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 835 EAEIRQLNSRrveLErALSNHENDNQQQriqFEQAKEGVTALNRilpRLNLLAD--DSLADRVDEIRERLDEAQEAARFV 912
Cdd:pfam10174 302 ESELLALQTK---LE-TLTNQNSDCKQH---IEVLKESLTAKEQ---RAAILQTevDALRLRLEEKESFLNKKTKQLQDL 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 913 Q-QFGNQLAKLEPIVSVLQSDPEQFEQLKEDYAYSQQMQRDARQQAFALTEVVQR-RAHFSYSDSA-----EMLSGNSDL 985
Cdd:pfam10174 372 TeEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSlQTDSSNTDTAlttleEALSEKERI 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 986 NEKLRERLEQAEAERTRAREALRghaAQLSQYNQVLASLKSSYDTKKELLNDLQRELQDIgvrADSGAEERARIRRDELH 1065
Cdd:pfam10174 452 IERLKEQREREDRERLEELESLK---KENKDLKEKVSALQPELTEKESSLIDLKEHASSL---ASSGLKKDSKLKSLEIA 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1066 AQLSNNRSRR--NQLEKALTFCEAEMDN--LTRKLRKLERDYFEMREQVVTAKAGWCAVMRMVKDNGVERRLHRRELAYL 1141
Cdd:pfam10174 526 VEQKKEECSKleNQLKKAHNAEEAVRTNpeINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAEL 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1142 SADDLRSMSDKALGALRLAVADNEHLRDVLRLSEDPKRPERKIQFFVAVYQhlrerirqdiirTDDPVEAIEQMEIELSR 1221
Cdd:pfam10174 606 ESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQ------------LEELMGALEKTRQELDA 673
|
410
....*....|...
gi 1882396408 1222 LTEELTSREQKLA 1234
Cdd:pfam10174 674 TKARLSSTQQSLA 686
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
499-665 |
1.91e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 42.05 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 499 RELLREGVDQrhLAEQVQPLRMRLSELE-QRLREQQEAERLLADFCKRqgknfdIDELEALHQELEARIASLSDSVSNAR 577
Cdd:pfam09787 56 RDLLREEIQK--LRGQIQQLRTELQELEaQQQEEAESSREQLQELEEQ------LATERSARREAEAELERLQEELRYLE 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 578 EErmaLRQEQEQLQSRIQSL---MQRapvwLAAQNSLNQLSEqcgeafSSSQDVTEYLQQLLER--EREAIVErdEVGAR 652
Cdd:pfam09787 128 EE---LRRSKATLQSRIKDReaeIEK----LRNQLTSKSQSS------SSQSELENRLHQLTETliQKQTMLE--ALSTE 192
|
170
....*....|...
gi 1882396408 653 KNAVDEEIERLSQ 665
Cdd:pfam09787 193 KNSLVLQLERMEQ 205
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
551-659 |
2.96e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 42.38 E-value: 2.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 551 DIDELEALHQELEARIASLSDSVSNAREERMA-LRQEQEQLQSRIQSLMQRapvWLAAQNSLNQLSEQCGEAFSSSQDVT 629
Cdd:COG0542 412 ELDELERRLEQLEIEKEALKKEQDEASFERLAeLRDELAELEEELEALKAR---WEAEKELIEEIQELKEELEQRYGKIP 488
|
90 100 110
....*....|....*....|....*....|
gi 1882396408 630 EYLQQLLEREREAIVERDEVgarKNAVDEE 659
Cdd:COG0542 489 ELEKELAELEEELAELAPLL---REEVTEE 515
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
826-1113 |
3.01e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 3.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 826 LAVAFESDPEAEIRQLNSRRVELERALSNHENDNQQQRIQFEQAKEGVTALNRILprlnlladDSLADRVDEIRERLDEA 905
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRI--------AALARRIRALEQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 906 QEaarfvqqfgnQLAKLEPIVSVLQsdpEQFEQLKEDYA-YSQQMQRDARQQAFALTevvqrrahFSYSDSAEMLSGNSD 984
Cdd:COG4942 82 EA----------ELAELEKEIAELR---AELEAQKEELAeLLRALYRLGRQPPLALL--------LSPEDFLDAVRRLQY 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 985 LNEKLRERLEQAEAERtrarealrghaAQLSQYNQVLASLKSSYDTKKELLNDLQRELQDIgvradsgaeERARIRRDEL 1064
Cdd:COG4942 141 LKYLAPARREQAEELR-----------ADLAELAALRAELEAERAELEALLAELEEERAAL---------EALKAERQKL 200
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1882396408 1065 HAQLsnnRSRRNQLEKALTFCEAEMDNLTRKLRKLERDYFEMREQVVTA 1113
Cdd:COG4942 201 LARL---EKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
845-1115 |
4.16e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.56 E-value: 4.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 845 RVELERALSNHENDNQQQRIQFEQ--AKEGVTALNRILPRLNLLAD--DSLADRVDEIRERLDEAQEAARFVQQFGNQLA 920
Cdd:PRK02224 175 RLGVERVLSDQRGSLDQLKAQIEEkeEKDLHERLNGLESELAELDEeiERYEEQREQARETRDEADEVLEEHEERREELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 921 KLEPIVSVLQSDPEQFEQLKEDYAYSQQMQRDARQQAfaLTEVVQRRAHFSYSD-SAEMLSgnsDLNEKLRERLEQAEAE 999
Cdd:PRK02224 255 TLEAEIEDLRETIAETEREREELAEEVRDLRERLEEL--EEERDDLLAEAGLDDaDAEAVE---ARREELEDRDEELRDR 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 1000 RTRAREALRGHAAQLSQYNQVLASLKSSYDTKKELLNDLQRELQDIGVRADSGAEERARIRR--DELHAQLSNNRSRRNQ 1077
Cdd:PRK02224 330 LEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEeiEELRERFGDAPVDLGN 409
|
250 260 270
....*....|....*....|....*....|....*...
gi 1882396408 1078 LEKALTFCEAEMDNLTRKLRKLERDYFEMREQVVTAKA 1115
Cdd:PRK02224 410 AEDFLEELREERDELREREAELEATLRTARERVEEAEA 447
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
510-676 |
4.81e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.58 E-value: 4.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 510 HLAEQVQPLRMRLSELEQRLREQQEAERLladfckRQGknfdIDELEALHQELEARIASLSDSVSNAREERMALRQEQEQ 589
Cdd:PRK10929 42 AQAEIVEALQSALNWLEERKGSLERAKQY------QQV----IDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 590 LQSRIQSLMQRApvwLAAQ---------NSLNQLSEQCGEAFSSSQDVTEYLQQLL-----EREREAIVERDEVGARKNA 655
Cdd:PRK10929 112 LQVSSQLLEKSR---QAQQeqdrareisDSLSQLPQQQTEARRQLNEIERRLQTLGtpntpLAQAQLTALQAESAALKAL 188
|
170 180
....*....|....*....|..
gi 1882396408 656 VDE-EIERLSQPGGSEDQRLNA 676
Cdd:PRK10929 189 VDElELAQLSANNRQELARLRS 210
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
10-51 |
6.80e-03 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 39.40 E-value: 6.80e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1882396408 10 LTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTAL 51
Cdd:pfam13476 1 LTIENFRSFRDQTIDFSKGLTLITGPNGSGKTTILDAIKLAL 42
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
6-51 |
7.53e-03 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 39.61 E-value: 7.53e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1882396408 6 KFRSLTLINWNGFF-ARTFDLDELVTTLSGGNGAGKSTTMAAFVTAL 51
Cdd:COG0419 1 KLLRLRLENFRSYRdTETIDFDDGLNLIVGPNGAGKSTILEAIRYAL 47
|
|
| mS26 |
cd23644 |
mS26 domain protein found in trypanosomal mitochondrial ribosomes; mS26 protein is a ... |
197-352 |
8.30e-03 |
|
mS26 domain protein found in trypanosomal mitochondrial ribosomes; mS26 protein is a mitochondrial protein found in Trypanosoma, but its function has not yet been fully characterized. It is known to be a component of the small subunits of the Trypanosoma mitochondrial ribosome (Tb-mt-SSUs) and interacts with the C-terminal domain (CTD) of initiation factor IF-3 to form a complex called Tb-mt-SSU/IF-3. This complex may play a role in the maturation of the mitochondrial ribosome.
Pssm-ID: 467879 Cd Length: 295 Bit Score: 40.07 E-value: 8.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 197 FYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALRE--NRMTLEAIRVtQSDRDLFKHLISEATNYVAADY 274
Cdd:cd23644 6 YYNLPSKSEHGRKMTGFLTPYRHWMWKQNELWRNVHEAQFEHLRRvyKRQWLESFRV-NADEYIYKYNITKAAQLAQWEC 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1882396408 275 MRHANERrvhldKALEfRRELHTSRQQLAAeqyKHVDMARELAEHNgaegdLEADYQAASDHL---NLVQ--TALRQQEK 349
Cdd:cd23644 85 EMKEQEK-----KRIE-ARQMMDGRQALKK---KHLDLLREFHERQ-----FFFWYERASERLqnmNLINyvPHAQLREH 150
|
...
gi 1882396408 350 IER 352
Cdd:cd23644 151 IDK 153
|
|
| |
