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Conserved domains on  [gi|1897348657|gb|QNL32397|]
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Hypothetical protein (plasmid) [Raoultella ornithinolytica]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MobI pfam19456
MobI protein; MobI is conserved across conjugative plasmids of incompatibility group C (IncC), ...
 23-140 4.00e-18

MobI protein; MobI is conserved across conjugative plasmids of incompatibility group C (IncC), integrative conjugative elements of the SXT/R391 family and numerous genomic islands mobilized by IncC plasmids. Alongside a relaxase of the MOBH1 family, this protein is essential to conjugative transfer of these elements and is likely a relaxosome component involved in recognition of the origin of transfer.


:

Pssm-ID: 466093  Cd Length: 116  Bit Score: 74.68  E-value: 4.00e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897348657  23 LKQEATLVLDQYWNVWKARNKlisdttyaNGGKFNPGRFAPVIRKvgSSQKVTISWKDFSPRFKNRIEHYGV---LVKPK 99
Cdd:pfam19456   1 LYAEAKALADRFWEAVKAERE--------KETGSERGRLGLRVRR--RGNSLTIEWYRNRFYGKKGGGKRRIskyIAKGK 70

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1897348657 100 LGGYSVSCFPK-ALDWELEMIQETEKKIIPIRELLHEYHERR 140
Cdd:pfam19456  71 GKRYSKSAFSKfAKDWELELVEETEEELAEIRRQAAHLSKAR 112
 
Name Accession Description Interval E-value
MobI pfam19456
MobI protein; MobI is conserved across conjugative plasmids of incompatibility group C (IncC), ...
 23-140 4.00e-18

MobI protein; MobI is conserved across conjugative plasmids of incompatibility group C (IncC), integrative conjugative elements of the SXT/R391 family and numerous genomic islands mobilized by IncC plasmids. Alongside a relaxase of the MOBH1 family, this protein is essential to conjugative transfer of these elements and is likely a relaxosome component involved in recognition of the origin of transfer.


Pssm-ID: 466093  Cd Length: 116  Bit Score: 74.68  E-value: 4.00e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897348657  23 LKQEATLVLDQYWNVWKARNKlisdttyaNGGKFNPGRFAPVIRKvgSSQKVTISWKDFSPRFKNRIEHYGV---LVKPK 99
Cdd:pfam19456   1 LYAEAKALADRFWEAVKAERE--------KETGSERGRLGLRVRR--RGNSLTIEWYRNRFYGKKGGGKRRIskyIAKGK 70

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1897348657 100 LGGYSVSCFPK-ALDWELEMIQETEKKIIPIRELLHEYHERR 140
Cdd:pfam19456  71 GKRYSKSAFSKfAKDWELELVEETEEELAEIRRQAAHLSKAR 112
 
Name Accession Description Interval E-value
MobI pfam19456
MobI protein; MobI is conserved across conjugative plasmids of incompatibility group C (IncC), ...
 23-140 4.00e-18

MobI protein; MobI is conserved across conjugative plasmids of incompatibility group C (IncC), integrative conjugative elements of the SXT/R391 family and numerous genomic islands mobilized by IncC plasmids. Alongside a relaxase of the MOBH1 family, this protein is essential to conjugative transfer of these elements and is likely a relaxosome component involved in recognition of the origin of transfer.


Pssm-ID: 466093  Cd Length: 116  Bit Score: 74.68  E-value: 4.00e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897348657  23 LKQEATLVLDQYWNVWKARNKlisdttyaNGGKFNPGRFAPVIRKvgSSQKVTISWKDFSPRFKNRIEHYGV---LVKPK 99
Cdd:pfam19456   1 LYAEAKALADRFWEAVKAERE--------KETGSERGRLGLRVRR--RGNSLTIEWYRNRFYGKKGGGKRRIskyIAKGK 70

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1897348657 100 LGGYSVSCFPK-ALDWELEMIQETEKKIIPIRELLHEYHERR 140
Cdd:pfam19456  71 GKRYSKSAFSKfAKDWELELVEETEEELAEIRRQAAHLSKAR 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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