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Conserved domains on  [gi|1897855679|gb|QNM43249|]
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DUF378 domain-containing protein [Shouchella clausii]

Protein Classification

DUF378 domain-containing protein( domain architecture ID 10005468)

DUF378 domain-containing protein similar to Bacillus subtilis YuzA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YuzA COG2155
Uncharacterized membrane protein YuzA, DUF378 family [Function unknown];
1-70 4.97e-29

Uncharacterized membrane protein YuzA, DUF378 family [Function unknown];


:

Pssm-ID: 441758  Cd Length: 70  Bit Score: 97.99  E-value: 4.97e-29
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897855679  1 MSGIQRTALVLAIIGAINWGLIGFFRFDLVAFIFNGQASIISRLIYALIGLSGLYAISILMKPKEELGRD 70
Cdd:COG2155    1 MKTLDRIALILVIIGALNWGLIGLFQFDLVAALFGGQASALSRIIYILVGLAGLYSLSLLFRIRKKPERE 70
 
Name Accession Description Interval E-value
YuzA COG2155
Uncharacterized membrane protein YuzA, DUF378 family [Function unknown];
1-70 4.97e-29

Uncharacterized membrane protein YuzA, DUF378 family [Function unknown];


Pssm-ID: 441758  Cd Length: 70  Bit Score: 97.99  E-value: 4.97e-29
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897855679  1 MSGIQRTALVLAIIGAINWGLIGFFRFDLVAFIFNGQASIISRLIYALIGLSGLYAISILMKPKEELGRD 70
Cdd:COG2155    1 MKTLDRIALILVIIGALNWGLIGLFQFDLVAALFGGQASALSRIIYILVGLAGLYSLSLLFRIRKKPERE 70
DUF378 pfam04070
Domain of unknown function (DUF378); Predicted transmembrane domain of unknown function. The ...
 4-61 1.55e-25

Domain of unknown function (DUF378); Predicted transmembrane domain of unknown function. The majority of the family have two predicted transmembrane regions.


Pssm-ID: 461157  Cd Length: 60  Bit Score: 89.05  E-value: 1.55e-25
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1897855679  4 IQRTALVLAIIGAINWGLIGFFRFDLVAFIFNGQASIISRLIYALIGLSGLYAISILM 61
Cdd:pfam04070  3 LDRIALILVIIGALNWGLIGLFQFDLVAALFGGQGSWLSRIIYALVGLAGLYCISLLF 60
 
Name Accession Description Interval E-value
YuzA COG2155
Uncharacterized membrane protein YuzA, DUF378 family [Function unknown];
1-70 4.97e-29

Uncharacterized membrane protein YuzA, DUF378 family [Function unknown];


Pssm-ID: 441758  Cd Length: 70  Bit Score: 97.99  E-value: 4.97e-29
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897855679  1 MSGIQRTALVLAIIGAINWGLIGFFRFDLVAFIFNGQASIISRLIYALIGLSGLYAISILMKPKEELGRD 70
Cdd:COG2155    1 MKTLDRIALILVIIGALNWGLIGLFQFDLVAALFGGQASALSRIIYILVGLAGLYSLSLLFRIRKKPERE 70
DUF378 pfam04070
Domain of unknown function (DUF378); Predicted transmembrane domain of unknown function. The ...
 4-61 1.55e-25

Domain of unknown function (DUF378); Predicted transmembrane domain of unknown function. The majority of the family have two predicted transmembrane regions.


Pssm-ID: 461157  Cd Length: 60  Bit Score: 89.05  E-value: 1.55e-25
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1897855679  4 IQRTALVLAIIGAINWGLIGFFRFDLVAFIFNGQASIISRLIYALIGLSGLYAISILM 61
Cdd:pfam04070  3 LDRIALILVIIGALNWGLIGLFQFDLVAALFGGQGSWLSRIIYALVGLAGLYCISLLF 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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