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Conserved domains on  [gi|1928753433|gb|QOX89539|]
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B3/4 domain-containing protein [Candidatus Phytoplasma asiaticum]

Protein Classification

B3/4 domain-containing protein( domain architecture ID 10507310)

B3/4 domain-containing protein may bind DNA/RNA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
B3_4 pfam03483
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA ...
 8-83 6.45e-20

B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.


:

Pssm-ID: 427327 [Multi-domain]  Cd Length: 174  Bit Score: 78.36  E-value: 6.45e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1928753433   8 CYEYNIRYITNLT-IKTSPLWLRNLLITNQIEPVNNVIDVINLIIIEYGIPLNVLDADQFNNqQIEIRNAKQNEKII 83
Cdd:pfam03483   2 CPRYFGRVIRGVKkNRPSPEWLQRRLRRAGIRPINNVVDITNYVMLELGQPLHAFDLDKIAG-DIVVRLAKGGEKFT 77
 
Name Accession Description Interval E-value
B3_4 pfam03483
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA ...
 8-83 6.45e-20

B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.


Pssm-ID: 427327 [Multi-domain]  Cd Length: 174  Bit Score: 78.36  E-value: 6.45e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1928753433   8 CYEYNIRYITNLT-IKTSPLWLRNLLITNQIEPVNNVIDVINLIIIEYGIPLNVLDADQFNNqQIEIRNAKQNEKII 83
Cdd:pfam03483   2 CPRYFGRVIRGVKkNRPSPEWLQRRLRRAGIRPINNVVDITNYVMLELGQPLHAFDLDKIAG-DIVVRLAKGGEKFT 77
PheT COG0072
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; ...
 5-82 3.24e-19

Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; Phenylalanyl-tRNA synthetase beta subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 439842 [Multi-domain]  Cd Length: 793  Bit Score: 80.21  E-value: 3.24e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1928753433   5 SKNCYEYNIRYITNLTIKTSPLWLRNLLITNQIEPVNNVIDVINLIIIEYGIPLNVLDADQFNNqQIEIRNAKQNEKI 82
Cdd:COG0072   211 PEACPRYAGRVIRGVKVGPSPLWMQERLRAAGIRPINNVVDITNYVMLELGQPLHAFDLDKLKG-GIVVRRAREGEKL 287
pheT PRK00629
phenylalanyl-tRNA synthetase subunit beta; Reviewed
 5-83 2.42e-18

phenylalanyl-tRNA synthetase subunit beta; Reviewed


Pssm-ID: 234804 [Multi-domain]  Cd Length: 791  Bit Score: 77.52  E-value: 2.42e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928753433   5 SKNCYEYNIRYITNLT-IKTSPLWLRNLLITNQIEPVNNVIDVINLIIIEYGIPLNVLDADQFNNqQIEIRNAKQNEKII 83
Cdd:PRK00629  209 PDLCPRYAGRVIKGVKnIAPSPLWLQERLRAAGIRPINNVVDITNYVMLELGQPLHAFDLDKIGG-GIVVRRAKEGEKLT 287
pheT_bact TIGR00472
phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; Every known example of ...
 7-88 4.28e-17

phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end. [Protein synthesis, tRNA aminoacylation]


Pssm-ID: 273097 [Multi-domain]  Cd Length: 797  Bit Score: 74.25  E-value: 4.28e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928753433   7 NCYEYNIRYITNLTIKTSPLWLRNLLITNQIEPVNNVIDVINLIIIEYGIPLNVLDADQFNNqQIEIRNAKQNEKIINSK 86
Cdd:TIGR00472 215 VCPFYLGRVIKGVKVKPSPLWLKERLRRSGIRPINNIVDITNYVMLELGQPLHAFDADKIEG-NIVVRSAKEGESFTTLD 293


                  ..
gi 1928753433  87 ET 88
Cdd:TIGR00472 294 GK 295
B3_4 smart00873
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA ...
 8-83 2.99e-15

B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.


Pssm-ID: 214876 [Multi-domain]  Cd Length: 174  Bit Score: 66.51  E-value: 2.99e-15
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1928753433    8 CYEYNIRYITNLTIKT-SPLWLRNLLITNQIEPVNNVIDVINLIIIEYGIPLNVLDADQFNNQQIEIRNAKQNEKII 83
Cdd:smart00873   1 CPRYLGRVIRGVKNTRpSPEWLQERLHRAGIRPINNVVDITNYVSLETGQPLHAFDLDKIKGKDIPLRRAKEGEKFE 77
 
Name Accession Description Interval E-value
B3_4 pfam03483
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA ...
 8-83 6.45e-20

B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.


Pssm-ID: 427327 [Multi-domain]  Cd Length: 174  Bit Score: 78.36  E-value: 6.45e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1928753433   8 CYEYNIRYITNLT-IKTSPLWLRNLLITNQIEPVNNVIDVINLIIIEYGIPLNVLDADQFNNqQIEIRNAKQNEKII 83
Cdd:pfam03483   2 CPRYFGRVIRGVKkNRPSPEWLQRRLRRAGIRPINNVVDITNYVMLELGQPLHAFDLDKIAG-DIVVRLAKGGEKFT 77
PheT COG0072
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; ...
 5-82 3.24e-19

Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; Phenylalanyl-tRNA synthetase beta subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 439842 [Multi-domain]  Cd Length: 793  Bit Score: 80.21  E-value: 3.24e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1928753433   5 SKNCYEYNIRYITNLTIKTSPLWLRNLLITNQIEPVNNVIDVINLIIIEYGIPLNVLDADQFNNqQIEIRNAKQNEKI 82
Cdd:COG0072   211 PEACPRYAGRVIRGVKVGPSPLWMQERLRAAGIRPINNVVDITNYVMLELGQPLHAFDLDKLKG-GIVVRRAREGEKL 287
pheT PRK00629
phenylalanyl-tRNA synthetase subunit beta; Reviewed
 5-83 2.42e-18

phenylalanyl-tRNA synthetase subunit beta; Reviewed


Pssm-ID: 234804 [Multi-domain]  Cd Length: 791  Bit Score: 77.52  E-value: 2.42e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928753433   5 SKNCYEYNIRYITNLT-IKTSPLWLRNLLITNQIEPVNNVIDVINLIIIEYGIPLNVLDADQFNNqQIEIRNAKQNEKII 83
Cdd:PRK00629  209 PDLCPRYAGRVIKGVKnIAPSPLWLQERLRAAGIRPINNVVDITNYVMLELGQPLHAFDLDKIGG-GIVVRRAKEGEKLT 287
pheT_bact TIGR00472
phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; Every known example of ...
 7-88 4.28e-17

phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end. [Protein synthesis, tRNA aminoacylation]


Pssm-ID: 273097 [Multi-domain]  Cd Length: 797  Bit Score: 74.25  E-value: 4.28e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1928753433   7 NCYEYNIRYITNLTIKTSPLWLRNLLITNQIEPVNNVIDVINLIIIEYGIPLNVLDADQFNNqQIEIRNAKQNEKIINSK 86
Cdd:TIGR00472 215 VCPFYLGRVIKGVKVKPSPLWLKERLRRSGIRPINNIVDITNYVMLELGQPLHAFDADKIEG-NIVVRSAKEGESFTTLD 293


                  ..
gi 1928753433  87 ET 88
Cdd:TIGR00472 294 GK 295
B3_4 smart00873
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA ...
 8-83 2.99e-15

B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.


Pssm-ID: 214876 [Multi-domain]  Cd Length: 174  Bit Score: 66.51  E-value: 2.99e-15
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1928753433    8 CYEYNIRYITNLTIKT-SPLWLRNLLITNQIEPVNNVIDVINLIIIEYGIPLNVLDADQFNNQQIEIRNAKQNEKII 83
Cdd:smart00873   1 CPRYLGRVIRGVKNTRpSPEWLQERLHRAGIRPINNVVDITNYVSLETGQPLHAFDLDKIKGKDIPLRRAKEGEKFE 77
syfB CHL00192
phenylalanyl-tRNA synthetase beta chain; Provisional
 6-72 3.85e-08

phenylalanyl-tRNA synthetase beta chain; Provisional


Pssm-ID: 214391 [Multi-domain]  Cd Length: 704  Bit Score: 48.55  E-value: 3.85e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1928753433   6 KNCYEYNIRYITNLTIKTSPLWLRNLLITNQIEPVNNVIDVINLIIIEYGIPLNVLDADQFNNQQIE 72
Cdd:CHL00192  105 LNCSMFIAVIIENIEIKDSPKWLQNRLSSSGFKSLNNLTDIQNYIMLETGQPIEIYDLDKIYSKNTT 171
B3/B4 COG3382
B3/B4 domain (DNA/RNA-binding domain of Phe-tRNA-synthetase) [General function prediction only] ...
 28-80 4.48e-05

B3/B4 domain (DNA/RNA-binding domain of Phe-tRNA-synthetase) [General function prediction only];


Pssm-ID: 442609 [Multi-domain]  Cd Length: 233  Bit Score: 39.84  E-value: 4.48e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1928753433  28 LRNLLITNQIEPVNNVIDVINLIIIEYGIPLNVLDADQFNNqQIEIRNAKQNE 80
Cdd:COG3382    86 LRRVLKGGGLPRINPLVDLYNAVSLRYLLPIGGYDLDKIEG-DLRLRLARGGE 137
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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