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Conserved domains on  [gi|1929624158|gb|QPA14837|]
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protein YmcE [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YmcE_antitoxin pfam15939
Putative antitoxin of bacterial toxin-antitoxin system; YmcE_antitoxin is the putative ...
 1-76 3.45e-48

Putative antitoxin of bacterial toxin-antitoxin system; YmcE_antitoxin is the putative antitoxin for the supposed bacterial toxin GnsA, UniProtKB:P0AC92, family pfam08178.


:

Pssm-ID: 292561  Cd Length: 76  Bit Score: 146.74  E-value: 3.45e-48
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1929624158  1 MRRWISQNNIRLPRGAFFISALFFFNAVCIVSDNLLIIESFGEMAYNISYLTRVPGTNTLLACCCLLRPEEVNSEY 76
Cdd:pfam15939  1 MRRWISQNNIRLPRGAFFISALFFFNAVCIVSDNLLIIESFGEMAYNISYLTRVPGTNTLLACCCLLRPEEVNSEY 76
 
Name Accession Description Interval E-value
YmcE_antitoxin pfam15939
Putative antitoxin of bacterial toxin-antitoxin system; YmcE_antitoxin is the putative ...
 1-76 3.45e-48

Putative antitoxin of bacterial toxin-antitoxin system; YmcE_antitoxin is the putative antitoxin for the supposed bacterial toxin GnsA, UniProtKB:P0AC92, family pfam08178.


Pssm-ID: 292561  Cd Length: 76  Bit Score: 146.74  E-value: 3.45e-48
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1929624158  1 MRRWISQNNIRLPRGAFFISALFFFNAVCIVSDNLLIIESFGEMAYNISYLTRVPGTNTLLACCCLLRPEEVNSEY 76
Cdd:pfam15939  1 MRRWISQNNIRLPRGAFFISALFFFNAVCIVSDNLLIIESFGEMAYNISYLTRVPGTNTLLACCCLLRPEEVNSEY 76
PRK09891 PRK09891
protein YmcE;
1-76 5.65e-44

protein YmcE;


Pssm-ID: 170147  Cd Length: 76  Bit Score: 136.28  E-value: 5.65e-44
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1929624158  1 MRRWISQNNIRLPRGAFFISALFFFNAVCIVSDNLLIIESFGEMAYNISYLTRVPGTNTLLACCCLLRPEEVNSEY 76
Cdd:PRK09891   1 MRRWISQNNIRLPRGAFFISALFFFNAVCIVSDNLLIIESFGEMAYNISYLTRVPGTNTLLACCCLLRPEEVNSEY 76
 
Name Accession Description Interval E-value
YmcE_antitoxin pfam15939
Putative antitoxin of bacterial toxin-antitoxin system; YmcE_antitoxin is the putative ...
 1-76 3.45e-48

Putative antitoxin of bacterial toxin-antitoxin system; YmcE_antitoxin is the putative antitoxin for the supposed bacterial toxin GnsA, UniProtKB:P0AC92, family pfam08178.


Pssm-ID: 292561  Cd Length: 76  Bit Score: 146.74  E-value: 3.45e-48
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1929624158  1 MRRWISQNNIRLPRGAFFISALFFFNAVCIVSDNLLIIESFGEMAYNISYLTRVPGTNTLLACCCLLRPEEVNSEY 76
Cdd:pfam15939  1 MRRWISQNNIRLPRGAFFISALFFFNAVCIVSDNLLIIESFGEMAYNISYLTRVPGTNTLLACCCLLRPEEVNSEY 76
PRK09891 PRK09891
protein YmcE;
1-76 5.65e-44

protein YmcE;


Pssm-ID: 170147  Cd Length: 76  Bit Score: 136.28  E-value: 5.65e-44
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1929624158  1 MRRWISQNNIRLPRGAFFISALFFFNAVCIVSDNLLIIESFGEMAYNISYLTRVPGTNTLLACCCLLRPEEVNSEY 76
Cdd:PRK09891   1 MRRWISQNNIRLPRGAFFISALFFFNAVCIVSDNLLIIESFGEMAYNISYLTRVPGTNTLLACCCLLRPEEVNSEY 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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