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Conserved domains on  [gi|1943158550|gb|QPR76935|]
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DUF3311 domain-containing protein [Bacillus tropicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3311 super family cl13239
Protein of unknown function (DUF3311); This is a family of short bacterial proteins of unknown ...
 6-58 2.10e-08

Protein of unknown function (DUF3311); This is a family of short bacterial proteins of unknown function.


The actual alignment was detected with superfamily member pfam11755:

Pssm-ID: 432052  Cd Length: 59  Bit Score: 44.97  E-value: 2.10e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1943158550  6 VLALIPVFCLVVGPVFANSVTPYILGMPFLLFWVLLSVLITSLCMGIVYVFDP 58
Cdd:pfam11755  1 WALLLPVLLALLWVPFYNRVDPLLLGMPFFYWWQLLWVVLASVCTALAYRLDW 53
 
Name Accession Description Interval E-value
DUF3311 pfam11755
Protein of unknown function (DUF3311); This is a family of short bacterial proteins of unknown ...
 6-58 2.10e-08

Protein of unknown function (DUF3311); This is a family of short bacterial proteins of unknown function.


Pssm-ID: 432052  Cd Length: 59  Bit Score: 44.97  E-value: 2.10e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1943158550  6 VLALIPVFCLVVGPVFANSVTPYILGMPFLLFWVLLSVLITSLCMGIVYVFDP 58
Cdd:pfam11755  1 WALLLPVLLALLWVPFYNRVDPLLLGMPFFYWWQLLWVVLASVCTALAYRLDW 53
 
Name Accession Description Interval E-value
DUF3311 pfam11755
Protein of unknown function (DUF3311); This is a family of short bacterial proteins of unknown ...
 6-58 2.10e-08

Protein of unknown function (DUF3311); This is a family of short bacterial proteins of unknown function.


Pssm-ID: 432052  Cd Length: 59  Bit Score: 44.97  E-value: 2.10e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1943158550  6 VLALIPVFCLVVGPVFANSVTPYILGMPFLLFWVLLSVLITSLCMGIVYVFDP 58
Cdd:pfam11755  1 WALLLPVLLALLWVPFYNRVDPLLLGMPFFYWWQLLWVVLASVCTALAYRLDW 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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