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Conserved domains on  [gi|1969438315|gb|QRA38525|]
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LapA family protein [Lactiplantibacillus plantarum]

Protein Classification

lipopolysaccharide assembly LapA domain-containing protein( domain architecture ID 10009265)

lipopolysaccharide assembly LapA domain-containing protein is a membrane protein, similar to Bacillus subtilis protein YrvD

Gene Ontology:  GO:0016020

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YrvD COG5416
Uncharacterized integral membrane protein YrvD [Function unknown];
1-92 1.38e-14

Uncharacterized integral membrane protein YrvD [Function unknown];


:

Pssm-ID: 444169  Cd Length: 96  Bit Score: 63.73  E-value: 1.38e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1969438315   1 MKnQWRLVSALVIALVVIIFAILNVEPVRINFGITAVHWPLILVIVVTLILGVITAVLMATVNESKERTahseALAAAQA 80
Cdd:COG5416     1 MK-QLYLILGLLVLLLLLIFAVQNTQPVTVNFLFGQFELPLILVILGAFVLGALLGALAGLVRILRLRR----EIKRLRK 75

                          90
                  ....*....|..
gi 1969438315  81 KIDKLTAENKQL 92
Cdd:COG5416    76 ELKELEKELAEL 87
 
Name Accession Description Interval E-value
YrvD COG5416
Uncharacterized integral membrane protein YrvD [Function unknown];
1-92 1.38e-14

Uncharacterized integral membrane protein YrvD [Function unknown];


Pssm-ID: 444169  Cd Length: 96  Bit Score: 63.73  E-value: 1.38e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1969438315   1 MKnQWRLVSALVIALVVIIFAILNVEPVRINFGITAVHWPLILVIVVTLILGVITAVLMATVNESKERTahseALAAAQA 80
Cdd:COG5416     1 MK-QLYLILGLLVLLLLLIFAVQNTQPVTVNFLFGQFELPLILVILGAFVLGALLGALAGLVRILRLRR----EIKRLRK 75

                          90
                  ....*....|..
gi 1969438315  81 KIDKLTAENKQL 92
Cdd:COG5416    76 ELKELEKELAEL 87
LapA_dom pfam06305
Lipopolysaccharide assembly protein A domain; This family includes a domain found in ...
 23-90 3.01e-08

Lipopolysaccharide assembly protein A domain; This family includes a domain found in lipopolysaccharide assembly protein A (LapA). LapA functions along with LapB in the assembly of lipopolysaccharide (LPS). Domains in this family are also found in some uncharacterized bacterial proteins.


Pssm-ID: 428880  Cd Length: 64  Bit Score: 46.74  E-value: 3.01e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1969438315  23 LNVEPVRINFGITAVHWPLILVIVVTLILGVITAVLMATVNESKERTahseALAAAQAKIDKLTAENK 90
Cdd:pfam06305   1 QNTQPVTVNFLFAQGELPLSLVLLIAFLIGALLGWLLSLPSYLRLRR----ELRRLKKELKKLEKELA 64
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 15-53 4.85e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 34.06  E-value: 4.85e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1969438315  15 LVVIIFAILNVE-----PVRINFGITAVHWPLILVIVVTLILGV 53
Cdd:MTH00148   59 LLAILFLVFDVEivllfPVLQSLGSSFSVWSLTSLFIFLLILIL 102
 
Name Accession Description Interval E-value
YrvD COG5416
Uncharacterized integral membrane protein YrvD [Function unknown];
1-92 1.38e-14

Uncharacterized integral membrane protein YrvD [Function unknown];


Pssm-ID: 444169  Cd Length: 96  Bit Score: 63.73  E-value: 1.38e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1969438315   1 MKnQWRLVSALVIALVVIIFAILNVEPVRINFGITAVHWPLILVIVVTLILGVITAVLMATVNESKERTahseALAAAQA 80
Cdd:COG5416     1 MK-QLYLILGLLVLLLLLIFAVQNTQPVTVNFLFGQFELPLILVILGAFVLGALLGALAGLVRILRLRR----EIKRLRK 75

                          90
                  ....*....|..
gi 1969438315  81 KIDKLTAENKQL 92
Cdd:COG5416    76 ELKELEKELAEL 87
LapA_dom pfam06305
Lipopolysaccharide assembly protein A domain; This family includes a domain found in ...
 23-90 3.01e-08

Lipopolysaccharide assembly protein A domain; This family includes a domain found in lipopolysaccharide assembly protein A (LapA). LapA functions along with LapB in the assembly of lipopolysaccharide (LPS). Domains in this family are also found in some uncharacterized bacterial proteins.


Pssm-ID: 428880  Cd Length: 64  Bit Score: 46.74  E-value: 3.01e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1969438315  23 LNVEPVRINFGITAVHWPLILVIVVTLILGVITAVLMATVNESKERTahseALAAAQAKIDKLTAENK 90
Cdd:pfam06305   1 QNTQPVTVNFLFAQGELPLSLVLLIAFLIGALLGWLLSLPSYLRLRR----ELRRLKKELKKLEKELA 64
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 15-53 4.85e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 34.06  E-value: 4.85e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1969438315  15 LVVIIFAILNVE-----PVRINFGITAVHWPLILVIVVTLILGV 53
Cdd:MTH00148   59 LLAILFLVFDVEivllfPVLQSLGSSFSVWSLTSLFIFLLILIL 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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