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Conserved domains on  [gi|1979710651|gb|QRJ54631|]
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type I toxin-antitoxin system Fst family toxin (plasmid) [Staphylococcus epidermidis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
type_I_tox_Fst NF033608
type I toxin-antitoxin system Fst family toxin;
4-31 5.85e-10

type I toxin-antitoxin system Fst family toxin;


:

Pssm-ID: 411230  Cd Length: 28  Bit Score: 46.99  E-value: 5.85e-10
                         10        20
                 ....*....|....*....|....*...
gi 1979710651  4 TLFVTIIAPIVVGVILTLFSHWLNNREK 31
Cdd:NF033608   1 DILVTIIAPIIVGCIVALFDHWLRNRDK 28
 
Name Accession Description Interval E-value
type_I_tox_Fst NF033608
type I toxin-antitoxin system Fst family toxin;
4-31 5.85e-10

type I toxin-antitoxin system Fst family toxin;


Pssm-ID: 411230  Cd Length: 28  Bit Score: 46.99  E-value: 5.85e-10
                         10        20
                 ....*....|....*....|....*...
gi 1979710651  4 TLFVTIIAPIVVGVILTLFSHWLNNREK 31
Cdd:NF033608   1 DILVTIIAPIIVGCIVALFDHWLRNRDK 28
Fst_toxin pfam13955
Toxin Fst, type I toxin-antitoxin system; Fst (faecalis plasmid stabilization toxin), also ...
 6-26 2.14e-03

Toxin Fst, type I toxin-antitoxin system; Fst (faecalis plasmid stabilization toxin), also known as RNA I, is a toxic peptide. Its N-terminus forms a transmembrane alpha helix, its C terminus is disordered and is likely to be cytosolic. Its translation is inhibited by the antisense RNA, RNA II, which acts as an antitoxin.


Pssm-ID: 372839  Cd Length: 21  Bit Score: 30.31  E-value: 2.14e-03
                         10        20
                 ....*....|....*....|.
gi 1979710651  6 FVTIIAPIVVGVILTLFSHWL 26
Cdd:pfam13955  1 FTTIIAPIVVGVILTLVDHWL 21
 
Name Accession Description Interval E-value
type_I_tox_Fst NF033608
type I toxin-antitoxin system Fst family toxin;
4-31 5.85e-10

type I toxin-antitoxin system Fst family toxin;


Pssm-ID: 411230  Cd Length: 28  Bit Score: 46.99  E-value: 5.85e-10
                         10        20
                 ....*....|....*....|....*...
gi 1979710651  4 TLFVTIIAPIVVGVILTLFSHWLNNREK 31
Cdd:NF033608   1 DILVTIIAPIIVGCIVALFDHWLRNRDK 28
Fst_toxin pfam13955
Toxin Fst, type I toxin-antitoxin system; Fst (faecalis plasmid stabilization toxin), also ...
 6-26 2.14e-03

Toxin Fst, type I toxin-antitoxin system; Fst (faecalis plasmid stabilization toxin), also known as RNA I, is a toxic peptide. Its N-terminus forms a transmembrane alpha helix, its C terminus is disordered and is likely to be cytosolic. Its translation is inhibited by the antisense RNA, RNA II, which acts as an antitoxin.


Pssm-ID: 372839  Cd Length: 21  Bit Score: 30.31  E-value: 2.14e-03
                         10        20
                 ....*....|....*....|.
gi 1979710651  6 FVTIIAPIVVGVILTLFSHWL 26
Cdd:pfam13955  1 FTTIIAPIVVGVILTLVDHWL 21
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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