|
Name |
Accession |
Description |
Interval |
E-value |
| transpos_IS481 |
NF033577 |
IS481 family transposase; null |
13-305 |
2.97e-109 |
|
IS481 family transposase; null
Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 318.77 E-value: 2.97e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 13 GRALLVNRVMQQNWTMRQASQAAGVSLRTGYKWLARFRSEGLDGLLDRSSRPHRSPKACAPEQVEHFAQQRRQ-RLPLWR 91
Cdd:NF033577 1 GRLELVRLVLEDGWSVREAARRFGISRKTVYKWLKRYRAGGEEGLIDRSRRPHRSPRRTSPETEARILALRRElRLGPRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 92 IAREAGR-----SLATVARYMERIGLSRLASLEPP-APVRRYERASPGELLHIDTKRLGRIRGVGhritgdraqnrnrgi 165
Cdd:NF033577 81 IAYELERqgpgvSRSTVHRILRRHGLSRLRALDRKtGKVKRYERAHPGELWHIDIKKLGRIPDVG--------------- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 166 gWDAVHLAIDDFSRVSFARILDDEGGDQCAEFLRQAtayYASLGVRIDRVMTDNGSGYVSRT--FRAVCVELGIRHIRTR 243
Cdd:NF033577 146 -RLYLHTAIDDHSRFAYAELYPDETAETAADFLRRA---FAEHGIPIRRVLTDNGSEFRSRAhgFELALAELGIEHRRTR 221
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1988060770 244 PYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQPFIDRYNWCRPHSALGHQPPITRI 305
Cdd:NF033577 222 PYHPQTNGKVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPAERF 283
|
|
| LZ_Tnp_IS481 |
pfam13011 |
leucine-zipper of insertion element IS481; This is the upstream region of the conjoined ORF AB ... |
1-85 |
7.50e-43 |
|
leucine-zipper of insertion element IS481; This is the upstream region of the conjoined ORF AB of insertion element 481. The significance of IS481 in the detection of Bordetella pertussis is discussed in. The B portion of the ORF AB carries the transposase activity in family rve, pfam00665.
Pssm-ID: 289759 [Multi-domain] Cd Length: 85 Bit Score: 142.49 E-value: 7.50e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 1 MNNHKHARLTRLGRALLVNRVMQQNWTMRQASQAAGVSLRTGYKWLARFRSEGLDGLLDRSSRPHRSPKACAPEQVEHFA 80
Cdd:pfam13011 1 MNNHGHARLTRHGRALLVNRVMEDNRPMAHAAQAAGVSLQCAHKWLARFRAEGLDGLLDRSSRPHRSPKACAPEQEEAFA 80
|
....*
gi 1988060770 81 QQRRQ 85
Cdd:pfam13011 81 EARAQ 85
|
|
| Tra5 |
COG2801 |
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; |
43-302 |
5.07e-24 |
|
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442053 [Multi-domain] Cd Length: 309 Bit Score: 99.46 E-value: 5.07e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 43 YKWLARFRSEGLDGLLDRSSRPHRSPKACAPEQVEHFAQQRRQRLPLWRIAREAGR-----SLATVARYMERIGL----- 112
Cdd:COG2801 43 LRLLRRRRARSRRRRRLRRPRSYRADEDAELLERIKEIFAESPRYGYRRITAELRRegiavNRKRVRRLMRELGLqarrr 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 113 ------SRLASLEPPAPVRRYERASPGELLHIDtkrlgrirgvghrITGDRAQNrnrgiGWDAVHLAIDDFSR--VSFaR 184
Cdd:COG2801 123 rkkkytTYSGHGGPIAPNLLFTATAPNQVWVTD-------------ITYIPTAE-----GWLYLAAVIDLFSReiVGW-S 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 185 ILDDEGGDQCAEFLRQATAYYASLGVRIdrVMTDNGSGYVSRTFRAVCVELGIRHIRTRPYTPKTNGKAERLVQTCLREW 264
Cdd:COG2801 184 VSDSMDAELVVDALEMAIERRGPPKPLI--LHSDNGSQYTSKAYQELLKKLGITQSMSRPGNPQDNAFIESFFGTLKYEL 261
|
250 260 270
....*....|....*....|....*....|....*...
gi 1988060770 265 AYARPYTSSAERQAALQPFIDRYNWCRPHSALGHQPPI 302
Cdd:COG2801 262 LYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYLTPA 299
|
|
| transpos_IS3 |
NF033516 |
IS3 family transposase; |
7-302 |
2.15e-21 |
|
IS3 family transposase;
Pssm-ID: 468052 [Multi-domain] Cd Length: 369 Bit Score: 93.01 E-value: 2.15e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 7 ARLTRLGRALLVNRVMQQNWTMRQASQAAGVSLRTGYKWLARfrsegldglldRSSRPHRSPKACApEQVEHFAQQRRQR 86
Cdd:NF033516 82 RKLLRPAVKYALIDALRGEYSVRRACRVLGVSRSTYYYWRKR-----------PPSRRAPDDAELR-ARIREIFEESRGR 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 87 LPLWRIAREAGR-----SLATVARYMERIGLSRlaslePPAPVRRYERASPGELLHIDTKRLGR---IRGVGHR----IT 154
Cdd:NF033516 150 YGYRRITALLRRegirvNHKRVYRLMRELGLLA-----RRRRKRRPYTTDSGHVHPVAPNLLNRqftATRPNQVwvtdIT 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 155 GDRAQNrnrgiGWDAVHLAIDDFSRvsfaRIL-----DDEGGDQCAEFLRQATAYYASLGVRIdrVMTDNGSGYVSRTFR 229
Cdd:NF033516 225 YIRTAE-----GWLYLAVVLDLFSR----EIVgwsvsTSMSAELVLDALEMAIEWRGKPEGLI--LHSDNGSQYTSKAYR 293
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1988060770 230 AVCVELGIRHIRTRPYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQPFIDRYNWCRPHSALGHQPPI 302
Cdd:NF033516 294 EWLKEHGITQSMSRPGNCWDNAVAESFFGTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPA 366
|
|
| PHA02517 |
PHA02517 |
putative transposase OrfB; Reviewed |
217-301 |
6.76e-12 |
|
putative transposase OrfB; Reviewed
Pssm-ID: 222853 [Multi-domain] Cd Length: 277 Bit Score: 64.89 E-value: 6.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 217 TDNGSGYVSRTFRAVCVELGIRHIRTRPYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQPFIDRYNWCRPHSAL 296
Cdd:PHA02517 175 SDKGSQYVSLAYTQRLKEAGIRASTGSRGDSYDNAPAESINGLYKAEVIHRVSWKNREEVELATLEWVAWYNNRRLHERL 254
|
....*
gi 1988060770 297 GHQPP 301
Cdd:PHA02517 255 GYTPP 259
|
|
| transpos_IS630 |
NF033545 |
IS630 family transposase; |
11-286 |
2.16e-11 |
|
IS630 family transposase;
Pssm-ID: 468076 [Multi-domain] Cd Length: 298 Bit Score: 63.43 E-value: 2.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 11 RLGRALLVNRvmqQNWTMRQASQAAGVSLRTGYKWLARFRSEGLDGLLDRsSRPHRSPKACAPEQVEHFAQ---QRRQRL 87
Cdd:NF033545 1 RRARILLLAA---EGLSITEIAERLGVSRSTVYRWLKRFNEGGLEGLLDK-PRPGRPRKLLSEQQAELLALlleEPPEGA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 88 PLW-------RIAREAGRSL--ATVARYMERIGLS----RLASLE-PPAPVRRY--------ERASPGELLHIDTKR--- 142
Cdd:NF033545 77 GHWtlrelaaLLEEEFGVEYsrSTVRRLLKRLGLSpkkpRPRAPKqDPEFVEKFkevlglyrAPPDPAEVVFIDESGiql 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 143 ---LGRIRGV-GHRITGDRAQNRNRGIGwdaVHLAIDDFSRVSFARILDDEGGDQCAEFLRQATAYYASLGVRIdrVMtD 218
Cdd:NF033545 157 ldtRGRGWAPkGQRRPRVHVYGRRGTLN---LFGALDPLTGKVFVLFTGRINSEDFIEFLEELLAAYPGKKIHL--IL-D 230
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1988060770 219 NGSGYVSRTFRAVCVELG-IRHIRTRPYTPKTNgKAERLVQTCLREWAYARPYTSSAERQAALQPFIDR 286
Cdd:NF033545 231 NASTHKSKKVREWLEEHGrIELHYLPPYSPWLN-PIERVWAVLKRRLLRNRAFRSVDELREAIDAFLNR 298
|
|
| transpos_IS21 |
NF033546 |
IS21 family transposase; |
22-300 |
9.96e-10 |
|
IS21 family transposase;
Pssm-ID: 468077 [Multi-domain] Cd Length: 296 Bit Score: 58.37 E-value: 9.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 22 MQQNWTMRQASQAAGVSLRTGYKWLARFrSEGLDGLLDRssRPHRSPKACAPEQVEH---FAQQRRQRLPLWRIAREAGR 98
Cdd:NF033546 5 FRQGLSIREIARELGISRNTVRKYLRRA-GLDEPPKYER--RPPRPSKLDPFEPYIPdwlEAHLRKPGVTATLLWEELRA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 99 -----SLATVARYMERIglsrLASLEPPAPVRRYERAsPGELLHIDTKRLGRIRGVGHRITgdraqnrnrgigwdaVHLA 173
Cdd:NF033546 82 egypgSYSTVRRYVRRW----RAEQGPAKVFVRLEHA-PGEQAQVDFGEATVVVTGGTGKI---------------LHVF 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 174 IDD--FSRVSFARILDDEGGDQCAEFLRQATAYYAslGVrIDRVMTDNGSGYVS-----------RTFRAVCVELGIRHI 240
Cdd:NF033546 142 VAVlgYSRYTYVEATPSESQEDLLDGHQRAFEFFG--GV-PREIVYDNLKTAVDkrdryeeprlnPRFAAFAAHYGFEPR 218
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1988060770 241 RTRPYTPKTNGKAERLVQTcLREWAYARPY---TSSAERQAALQPFIDRYNWCRPHSALGHQP 300
Cdd:NF033546 219 PCRPYRPQEKGKVERAVGY-VRRWFLRLRGrrfESLAELNAALAEWLAELANQRPHGTTGGSP 280
|
|
| transpos_ISNCY_2 |
NF033594 |
ISNCY family transposase; The ISNCY insertion sequence family, as defined by ISFinder, encodes ... |
18-176 |
1.04e-05 |
|
ISNCY family transposase; The ISNCY insertion sequence family, as defined by ISFinder, encodes several apparently unrelated families of transposases. Members of this family resemble the transposases of ISNCY family elements such as IS1202, ISTde1, ISKpn21, and ISCARN1.
Pssm-ID: 468103 [Multi-domain] Cd Length: 367 Bit Score: 46.71 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 18 VNRVMQQNWTMRQASQAAGVSLRTGYKWLARFRSEGLDGLLDRSSRphRSPKACAPEQVEHFAQQRRQ-----------R 86
Cdd:NF033594 3 IQKVVDGRLTVKEAAELLGLSERQVRRLLKRYREEGAAGLVHGNRG--RPPNNRLPDELRERVLALYReryydfgptlaL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 87 LPLW-----RIAREagrslaTVARYMERIGLSRLASLEPPAP-VRRYERASPGELLHIDtkrlgrirGVGHRITGDRaqn 160
Cdd:NF033594 81 EKLRerhgiSLSRE------TVRRWMIEAGLWSPRKQRRPKVhQPRERRACFGELIQID--------GSPHDWFEGR--- 143
|
170
....*....|....*..
gi 1988060770 161 rnrgiGWD-AVHLAIDD 176
Cdd:NF033594 144 -----GPKcTLLVAIDD 155
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| transpos_IS481 |
NF033577 |
IS481 family transposase; null |
13-305 |
2.97e-109 |
|
IS481 family transposase; null
Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 318.77 E-value: 2.97e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 13 GRALLVNRVMQQNWTMRQASQAAGVSLRTGYKWLARFRSEGLDGLLDRSSRPHRSPKACAPEQVEHFAQQRRQ-RLPLWR 91
Cdd:NF033577 1 GRLELVRLVLEDGWSVREAARRFGISRKTVYKWLKRYRAGGEEGLIDRSRRPHRSPRRTSPETEARILALRRElRLGPRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 92 IAREAGR-----SLATVARYMERIGLSRLASLEPP-APVRRYERASPGELLHIDTKRLGRIRGVGhritgdraqnrnrgi 165
Cdd:NF033577 81 IAYELERqgpgvSRSTVHRILRRHGLSRLRALDRKtGKVKRYERAHPGELWHIDIKKLGRIPDVG--------------- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 166 gWDAVHLAIDDFSRVSFARILDDEGGDQCAEFLRQAtayYASLGVRIDRVMTDNGSGYVSRT--FRAVCVELGIRHIRTR 243
Cdd:NF033577 146 -RLYLHTAIDDHSRFAYAELYPDETAETAADFLRRA---FAEHGIPIRRVLTDNGSEFRSRAhgFELALAELGIEHRRTR 221
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1988060770 244 PYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQPFIDRYNWCRPHSALGHQPPITRI 305
Cdd:NF033577 222 PYHPQTNGKVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPAERF 283
|
|
| LZ_Tnp_IS481 |
pfam13011 |
leucine-zipper of insertion element IS481; This is the upstream region of the conjoined ORF AB ... |
1-85 |
7.50e-43 |
|
leucine-zipper of insertion element IS481; This is the upstream region of the conjoined ORF AB of insertion element 481. The significance of IS481 in the detection of Bordetella pertussis is discussed in. The B portion of the ORF AB carries the transposase activity in family rve, pfam00665.
Pssm-ID: 289759 [Multi-domain] Cd Length: 85 Bit Score: 142.49 E-value: 7.50e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 1 MNNHKHARLTRLGRALLVNRVMQQNWTMRQASQAAGVSLRTGYKWLARFRSEGLDGLLDRSSRPHRSPKACAPEQVEHFA 80
Cdd:pfam13011 1 MNNHGHARLTRHGRALLVNRVMEDNRPMAHAAQAAGVSLQCAHKWLARFRAEGLDGLLDRSSRPHRSPKACAPEQEEAFA 80
|
....*
gi 1988060770 81 QQRRQ 85
Cdd:pfam13011 81 EARAQ 85
|
|
| Tra5 |
COG2801 |
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; |
43-302 |
5.07e-24 |
|
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442053 [Multi-domain] Cd Length: 309 Bit Score: 99.46 E-value: 5.07e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 43 YKWLARFRSEGLDGLLDRSSRPHRSPKACAPEQVEHFAQQRRQRLPLWRIAREAGR-----SLATVARYMERIGL----- 112
Cdd:COG2801 43 LRLLRRRRARSRRRRRLRRPRSYRADEDAELLERIKEIFAESPRYGYRRITAELRRegiavNRKRVRRLMRELGLqarrr 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 113 ------SRLASLEPPAPVRRYERASPGELLHIDtkrlgrirgvghrITGDRAQNrnrgiGWDAVHLAIDDFSR--VSFaR 184
Cdd:COG2801 123 rkkkytTYSGHGGPIAPNLLFTATAPNQVWVTD-------------ITYIPTAE-----GWLYLAAVIDLFSReiVGW-S 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 185 ILDDEGGDQCAEFLRQATAYYASLGVRIdrVMTDNGSGYVSRTFRAVCVELGIRHIRTRPYTPKTNGKAERLVQTCLREW 264
Cdd:COG2801 184 VSDSMDAELVVDALEMAIERRGPPKPLI--LHSDNGSQYTSKAYQELLKKLGITQSMSRPGNPQDNAFIESFFGTLKYEL 261
|
250 260 270
....*....|....*....|....*....|....*...
gi 1988060770 265 AYARPYTSSAERQAALQPFIDRYNWCRPHSALGHQPPI 302
Cdd:COG2801 262 LYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYLTPA 299
|
|
| transpos_IS3 |
NF033516 |
IS3 family transposase; |
7-302 |
2.15e-21 |
|
IS3 family transposase;
Pssm-ID: 468052 [Multi-domain] Cd Length: 369 Bit Score: 93.01 E-value: 2.15e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 7 ARLTRLGRALLVNRVMQQNWTMRQASQAAGVSLRTGYKWLARfrsegldglldRSSRPHRSPKACApEQVEHFAQQRRQR 86
Cdd:NF033516 82 RKLLRPAVKYALIDALRGEYSVRRACRVLGVSRSTYYYWRKR-----------PPSRRAPDDAELR-ARIREIFEESRGR 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 87 LPLWRIAREAGR-----SLATVARYMERIGLSRlaslePPAPVRRYERASPGELLHIDTKRLGR---IRGVGHR----IT 154
Cdd:NF033516 150 YGYRRITALLRRegirvNHKRVYRLMRELGLLA-----RRRRKRRPYTTDSGHVHPVAPNLLNRqftATRPNQVwvtdIT 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 155 GDRAQNrnrgiGWDAVHLAIDDFSRvsfaRIL-----DDEGGDQCAEFLRQATAYYASLGVRIdrVMTDNGSGYVSRTFR 229
Cdd:NF033516 225 YIRTAE-----GWLYLAVVLDLFSR----EIVgwsvsTSMSAELVLDALEMAIEWRGKPEGLI--LHSDNGSQYTSKAYR 293
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1988060770 230 AVCVELGIRHIRTRPYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQPFIDRYNWCRPHSALGHQPPI 302
Cdd:NF033516 294 EWLKEHGITQSMSRPGNCWDNAVAESFFGTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPA 366
|
|
| rve_3 |
pfam13683 |
Integrase core domain; |
235-301 |
1.24e-20 |
|
Integrase core domain;
Pssm-ID: 433402 [Multi-domain] Cd Length: 67 Bit Score: 83.80 E-value: 1.24e-20
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1988060770 235 LGIRHIRTRPYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQPFIDRYNWCRPHSALGHQPP 301
Cdd:pfam13683 1 LGIEISYIAPGKPMQNGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
|
|
| rve |
pfam00665 |
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ... |
166-247 |
4.98e-15 |
|
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.
Pssm-ID: 459897 [Multi-domain] Cd Length: 98 Bit Score: 69.65 E-value: 4.98e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 166 GWDAVHLAIDDFSRVSFARILDDEG-GDQCAEFLRQATAYYaslGVRIDRVMTDNGSGYVSRTFRAVCVELGIRHIRTRP 244
Cdd:pfam00665 19 GKLYLLVIVDDFSREILAWALSSEMdAELVLDALERAIAFR---GGVPLIIHSDNGSEYTSKAFREFLKDLGIKPSFSRP 95
|
...
gi 1988060770 245 YTP 247
Cdd:pfam00665 96 GNP 98
|
|
| PHA02517 |
PHA02517 |
putative transposase OrfB; Reviewed |
217-301 |
6.76e-12 |
|
putative transposase OrfB; Reviewed
Pssm-ID: 222853 [Multi-domain] Cd Length: 277 Bit Score: 64.89 E-value: 6.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 217 TDNGSGYVSRTFRAVCVELGIRHIRTRPYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQPFIDRYNWCRPHSAL 296
Cdd:PHA02517 175 SDKGSQYVSLAYTQRLKEAGIRASTGSRGDSYDNAPAESINGLYKAEVIHRVSWKNREEVELATLEWVAWYNNRRLHERL 254
|
....*
gi 1988060770 297 GHQPP 301
Cdd:PHA02517 255 GYTPP 259
|
|
| transpos_IS630 |
NF033545 |
IS630 family transposase; |
11-286 |
2.16e-11 |
|
IS630 family transposase;
Pssm-ID: 468076 [Multi-domain] Cd Length: 298 Bit Score: 63.43 E-value: 2.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 11 RLGRALLVNRvmqQNWTMRQASQAAGVSLRTGYKWLARFRSEGLDGLLDRsSRPHRSPKACAPEQVEHFAQ---QRRQRL 87
Cdd:NF033545 1 RRARILLLAA---EGLSITEIAERLGVSRSTVYRWLKRFNEGGLEGLLDK-PRPGRPRKLLSEQQAELLALlleEPPEGA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 88 PLW-------RIAREAGRSL--ATVARYMERIGLS----RLASLE-PPAPVRRY--------ERASPGELLHIDTKR--- 142
Cdd:NF033545 77 GHWtlrelaaLLEEEFGVEYsrSTVRRLLKRLGLSpkkpRPRAPKqDPEFVEKFkevlglyrAPPDPAEVVFIDESGiql 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 143 ---LGRIRGV-GHRITGDRAQNRNRGIGwdaVHLAIDDFSRVSFARILDDEGGDQCAEFLRQATAYYASLGVRIdrVMtD 218
Cdd:NF033545 157 ldtRGRGWAPkGQRRPRVHVYGRRGTLN---LFGALDPLTGKVFVLFTGRINSEDFIEFLEELLAAYPGKKIHL--IL-D 230
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1988060770 219 NGSGYVSRTFRAVCVELG-IRHIRTRPYTPKTNgKAERLVQTCLREWAYARPYTSSAERQAALQPFIDR 286
Cdd:NF033545 231 NASTHKSKKVREWLEEHGrIELHYLPPYSPWLN-PIERVWAVLKRRLLRNRAFRSVDELREAIDAFLNR 298
|
|
| transpos_IS21 |
NF033546 |
IS21 family transposase; |
22-300 |
9.96e-10 |
|
IS21 family transposase;
Pssm-ID: 468077 [Multi-domain] Cd Length: 296 Bit Score: 58.37 E-value: 9.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 22 MQQNWTMRQASQAAGVSLRTGYKWLARFrSEGLDGLLDRssRPHRSPKACAPEQVEH---FAQQRRQRLPLWRIAREAGR 98
Cdd:NF033546 5 FRQGLSIREIARELGISRNTVRKYLRRA-GLDEPPKYER--RPPRPSKLDPFEPYIPdwlEAHLRKPGVTATLLWEELRA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 99 -----SLATVARYMERIglsrLASLEPPAPVRRYERAsPGELLHIDTKRLGRIRGVGHRITgdraqnrnrgigwdaVHLA 173
Cdd:NF033546 82 egypgSYSTVRRYVRRW----RAEQGPAKVFVRLEHA-PGEQAQVDFGEATVVVTGGTGKI---------------LHVF 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 174 IDD--FSRVSFARILDDEGGDQCAEFLRQATAYYAslGVrIDRVMTDNGSGYVS-----------RTFRAVCVELGIRHI 240
Cdd:NF033546 142 VAVlgYSRYTYVEATPSESQEDLLDGHQRAFEFFG--GV-PREIVYDNLKTAVDkrdryeeprlnPRFAAFAAHYGFEPR 218
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1988060770 241 RTRPYTPKTNGKAERLVQTcLREWAYARPY---TSSAERQAALQPFIDRYNWCRPHSALGHQP 300
Cdd:NF033546 219 PCRPYRPQEKGKVERAVGY-VRRWFLRLRGrrfESLAELNAALAEWLAELANQRPHGTTGGSP 280
|
|
| Csa3 |
COG3415 |
CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein ... |
1-304 |
1.34e-09 |
|
CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein Csa3, CARF domain is part of the Pathway/BioSystem: CRISPR-Cas system
Pssm-ID: 442641 [Multi-domain] Cd Length: 325 Bit Score: 58.32 E-value: 1.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 1 MNNHKHARLTRlgRALLVNRVmQQNWTMRQASQAAGVSLRTGYKWLARFRSEGLDGLLDRSSRphRSPKACAPEQVEHFA 80
Cdd:COG3415 17 LRKTKDAREAR--RLRAVLLL-AEGLSVREIAERLGVSRSTVYRWLKRYREGGLAGLKDRPRG--GRPSKLSDEQRERLL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 81 QQRRQRLP----LW-------RIAREAGR--SLATVARYMERIGLSRL-ASLEPPAPVRRYERASPGELLHIDTKRLGRI 146
Cdd:COG3415 92 ELLREKSPdqgsRWtlaelaeLLEEEFGVevSPSTVRRLLKRLGLSYKkPRPRAPKQDPEAVEKFKKELEALLAKPAKAE 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 147 RGVGHRITGDRAQNRNRGIGWDAVHLAIDDFSRVSFARilddeggdQCAEFLRQATAYYASLGVRIDRVMTDNGSGYVSR 226
Cdd:COG3415 172 VAGVDEGDEIGALRRAAGGRLLAPGGRVRRTGASVRRG--------RALLFLALGLALGLRIGLTIDALLAGALLLFLRL 243
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1988060770 227 TFRAVCVELGIRHIRTRPYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQPFIDRYNWCRPHSALGHQPPITR 304
Cdd:COG3415 244 LAERALALLLLLLLLLLLSPSKAVARAAKLLKLELLRLLFLPPSASLLLALEALLRELRERNLLRLAHASLLLLFAAA 321
|
|
| PRK14702 |
PRK14702 |
insertion element IS2 transposase InsD; Provisional |
216-301 |
3.62e-06 |
|
insertion element IS2 transposase InsD; Provisional
Pssm-ID: 237792 [Multi-domain] Cd Length: 262 Bit Score: 47.42 E-value: 3.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 216 MTDNGSGYVSRTFRAVCVELGIRHIRTRPYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQPFIDRYNWCRPHSA 295
Cdd:PRK14702 157 LTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSA 236
|
....*.
gi 1988060770 296 LGHQPP 301
Cdd:PRK14702 237 LGYRSP 242
|
|
| PRK09409 |
PRK09409 |
IS2 transposase TnpB; Reviewed |
216-301 |
4.10e-06 |
|
IS2 transposase TnpB; Reviewed
Pssm-ID: 181829 [Multi-domain] Cd Length: 301 Bit Score: 47.79 E-value: 4.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 216 MTDNGSGYVSRTFRAVCVELGIRHIRTRPYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQPFIDRYNWCRPHSA 295
Cdd:PRK09409 196 LTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSA 275
|
....*.
gi 1988060770 296 LGHQPP 301
Cdd:PRK09409 276 LGYRSP 281
|
|
| transpos_ISNCY_2 |
NF033594 |
ISNCY family transposase; The ISNCY insertion sequence family, as defined by ISFinder, encodes ... |
18-176 |
1.04e-05 |
|
ISNCY family transposase; The ISNCY insertion sequence family, as defined by ISFinder, encodes several apparently unrelated families of transposases. Members of this family resemble the transposases of ISNCY family elements such as IS1202, ISTde1, ISKpn21, and ISCARN1.
Pssm-ID: 468103 [Multi-domain] Cd Length: 367 Bit Score: 46.71 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 18 VNRVMQQNWTMRQASQAAGVSLRTGYKWLARFRSEGLDGLLDRSSRphRSPKACAPEQVEHFAQQRRQ-----------R 86
Cdd:NF033594 3 IQKVVDGRLTVKEAAELLGLSERQVRRLLKRYREEGAAGLVHGNRG--RPPNNRLPDELRERVLALYReryydfgptlaL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988060770 87 LPLW-----RIAREagrslaTVARYMERIGLSRLASLEPPAP-VRRYERASPGELLHIDtkrlgrirGVGHRITGDRaqn 160
Cdd:NF033594 81 EKLRerhgiSLSRE------TVRRWMIEAGLWSPRKQRRPKVhQPRERRACFGELIQID--------GSPHDWFEGR--- 143
|
170
....*....|....*..
gi 1988060770 161 rnrgiGWD-AVHLAIDD 176
Cdd:NF033594 144 -----GPKcTLLVAIDD 155
|
|
| HTH_28 |
pfam13518 |
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is ... |
14-65 |
1.95e-05 |
|
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.
Pssm-ID: 463908 [Multi-domain] Cd Length: 52 Bit Score: 41.42 E-value: 1.95e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1988060770 14 RALLVNRVMQQNwTMRQASQAAGVSLRTGYKWLARFRSEGLDGLLDRSSRPH 65
Cdd:pfam13518 2 RLKIVLLALEGE-SIKEAARLFGISRSTVYRWIRRYREGGLEGLLPRRRRPK 52
|
|
| HTH_32 |
pfam13565 |
Homeodomain-like domain; |
41-107 |
5.33e-05 |
|
Homeodomain-like domain;
Pssm-ID: 463923 [Multi-domain] Cd Length: 73 Bit Score: 40.74 E-value: 5.33e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1988060770 41 TGYKWLARFRSEGLDGLLDRSSRPHrsPKACAPEQVEHFAQQRRQ--RLPLWRIAREAGR------SLATVARYM 107
Cdd:pfam13565 1 TVYRWRKRYNEEGLEGLEDRPRRGR--PRKLTDEQEARLLALLCEepRWSPRLLAERLEEefgvkvSRSTVRRIL 73
|
|
| HTH_29 |
pfam13551 |
Winged helix-turn helix; This helix-turn-helix domain is often found in transferases and is ... |
14-75 |
9.55e-05 |
|
Winged helix-turn helix; This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.
Pssm-ID: 433301 [Multi-domain] Cd Length: 64 Bit Score: 39.66 E-value: 9.55e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1988060770 14 RALLVNRVMQQNWTMRQASQAAGVSLRTGYKWLARFRSEGLDGLLDRSSRPHRSPKACAPEQ 75
Cdd:pfam13551 1 RALALLLLAEGVSTVSQAARLLGLSRRTVYRWLKRFNEGGLAALLDRPRSGRPRNNRLDEEQ 62
|
|
| HTH_23 |
pfam13384 |
Homeodomain-like domain; |
14-58 |
1.61e-04 |
|
Homeodomain-like domain;
Pssm-ID: 433164 [Multi-domain] Cd Length: 50 Bit Score: 38.79 E-value: 1.61e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1988060770 14 RALLVNRVmQQNWTMRQASQAAGVSLRTGYKWLARFRSEGLDGLL 58
Cdd:pfam13384 7 RARALLLL-AEGLSVKEIAELLGVSRRTVYRWLKRYNEEGLEGLL 50
|
|
| |
