|
Name |
Accession |
Description |
Interval |
E-value |
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
4-328 |
2.04e-169 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 474.03 E-value: 2.04e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 4 PTTPQQVAKSASAKKMLMSDLMQTVGILPILILIVAVFGFIAPNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDLS 83
Cdd:COG4158 6 PAPAAPSAAPAAARRFRLRSLLQAVGMLPVLILLCIGFELLTPNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 84 VGSILGTTAVAAMVVSLIPEFAMLSVPAALLLGMVLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSNI 163
Cdd:COG4158 86 VGSILAASAVVAVLVSLLPGLGLLGIPAALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVFNPDL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 164 SFEWIGNNYLGPVPWLVVIALAVVVVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSA 243
Cdd:COG4158 166 PFAWIGNGYLLGIPWLVVIALAVVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSA 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 244 SRLYSANGN-LGMGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDK 322
Cdd:COG4158 246 ARLYAANGLqLGQGYELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALDR 325
|
....*.
gi 1994019414 323 YRTRHH 328
Cdd:COG4158 326 YRQRGS 331
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
34-323 |
9.35e-82 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 250.79 E-value: 9.35e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 34 LILIVAVFGFIAPNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSILGTT-AVAAMVVSL-IPefAMLSVPA 111
Cdd:PRK09512 25 LLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTgAVAASIVGIeVN--ALVAVPA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 112 ALLLGMVLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTvINSNIS-----FEWIGNNYLGPVPWLVVIALAV 186
Cdd:PRK09512 103 ALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSP-INTGFTdnadlFGWFGIGRPLGIPTPVWIMAIV 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 187 VVVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGMGYELDAIAAVI 266
Cdd:PRK09512 182 FLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVV 261
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1994019414 267 LGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKY 323
Cdd:PRK09512 262 LGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNK 318
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
61-321 |
2.21e-79 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 242.70 E-value: 2.21e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 61 ASINIVLAAGMTFIILTGGIDLSVGSILGTTAV-AAMVVSLIPEFAMLSVPAALLLGMVLGLFNGALVAFAGLPPFIVTL 139
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVvAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 140 GTYTALRGAAYLLADGTTVINSNISFEW-IGNNYLGPVPWLVVIALAVVVVCWFILRRTTLGVHIYAVGGNMQAARLTGI 218
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSFfLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 219 KVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGMGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTL 298
Cdd:cd06579 161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNL 240
|
250 260
....*....|....*....|...
gi 1994019414 299 MGVSYFWQLVIKGAVIIIAVLID 321
Cdd:cd06579 241 LGVSSFWQQIVKGAILLLAVALD 263
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
25-323 |
1.25e-55 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 185.35 E-value: 1.25e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 25 MQTVGILPILILIVAVFGFIAPN-FFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSILG-TTAVAAMvvsLIP 102
Cdd:NF040906 2 LRQYGMLIALVAIVVLFQILTGGiLLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAfVGAVAAV---LMV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 103 EFAM---LSVPAALLLGMVLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSNISFEWIGNNYLGPV--- 176
Cdd:NF040906 79 NWGMpwwLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGFLPDLfgg 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 177 ------------------------------------------------------------------PWLVVIALAVVVVC 190
Cdd:NF040906 159 tglhlltlllgvlaaaalvwsqlrgrrrrikyglevepmalfiaklvliaaailfftyllasyrglPNVLIILGVLILVY 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 191 WFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGMGYELDAIAAVILGGT 270
Cdd:NF040906 239 SFVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGA 318
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1994019414 271 SFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKY 323
Cdd:NF040906 319 SASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVY 371
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
53-318 |
5.26e-27 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 106.96 E-value: 5.26e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 53 NLLNITRQASINIVLAAGMTFII-LTGGIDLSVGSILGTTA-VAAMVVSLIPEFAMLSVPAALLLGMVLGLFNGALVAFA 130
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAyVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 131 GLPPFIVTLGTYTALRGAAYLLADGTTVINSNIS-----FEWIGNNYLGPVPWLVVIALAVVVVCWFILRRTTLGVHIYA 205
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLVTGILGGEGGTSgitgpSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 206 VGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSAN-GNLGMGYELDAIAAVILggtsfvGGIGTITGTLV 284
Cdd:pfam02653 161 VGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPpSNFGVGLGLDAIAAVVL------GGAGSPIGVVI 234
|
250 260 270
....*....|....*....|....*....|....*
gi 1994019414 285 GALIIATLNNGMTLM-GVSYFWQLVIKGAVIIIAV 318
Cdd:pfam02653 235 GSLIIGLVQSLGLGAlGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
4-328 |
2.04e-169 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 474.03 E-value: 2.04e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 4 PTTPQQVAKSASAKKMLMSDLMQTVGILPILILIVAVFGFIAPNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDLS 83
Cdd:COG4158 6 PAPAAPSAAPAAARRFRLRSLLQAVGMLPVLILLCIGFELLTPNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 84 VGSILGTTAVAAMVVSLIPEFAMLSVPAALLLGMVLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSNI 163
Cdd:COG4158 86 VGSILAASAVVAVLVSLLPGLGLLGIPAALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVFNPDL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 164 SFEWIGNNYLGPVPWLVVIALAVVVVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSA 243
Cdd:COG4158 166 PFAWIGNGYLLGIPWLVVIALAVVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSA 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 244 SRLYSANGN-LGMGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDK 322
Cdd:COG4158 246 ARLYAANGLqLGQGYELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALDR 325
|
....*.
gi 1994019414 323 YRTRHH 328
Cdd:COG4158 326 YRQRGS 331
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
12-326 |
5.14e-103 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 305.11 E-value: 5.14e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 12 KSASAKKMLMSDLMQTVGILPILILIVAVFGFIAPNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSILGTT 91
Cdd:COG1172 3 ATTTTARSLLRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 92 AVAAMVVSLIPEFAM-LSVPAALLLGMVLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSNISFEWIGN 170
Cdd:COG1172 83 GVVAALLLVALGLPIlLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQ 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 171 NYLGPVPWLVVIALAVVVVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSAN 250
Cdd:COG1172 163 GSLLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQ 242
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1994019414 251 GNLGMGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKYRTR 326
Cdd:COG1172 243 PNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRR 318
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
34-323 |
9.35e-82 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 250.79 E-value: 9.35e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 34 LILIVAVFGFIAPNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSILGTT-AVAAMVVSL-IPefAMLSVPA 111
Cdd:PRK09512 25 LLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTgAVAASIVGIeVN--ALVAVPA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 112 ALLLGMVLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTvINSNIS-----FEWIGNNYLGPVPWLVVIALAV 186
Cdd:PRK09512 103 ALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSP-INTGFTdnadlFGWFGIGRPLGIPTPVWIMAIV 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 187 VVVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGMGYELDAIAAVI 266
Cdd:PRK09512 182 FLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVV 261
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1994019414 267 LGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKY 323
Cdd:PRK09512 262 LGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNK 318
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
61-321 |
2.21e-79 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 242.70 E-value: 2.21e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 61 ASINIVLAAGMTFIILTGGIDLSVGSILGTTAV-AAMVVSLIPEFAMLSVPAALLLGMVLGLFNGALVAFAGLPPFIVTL 139
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVvAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 140 GTYTALRGAAYLLADGTTVINSNISFEW-IGNNYLGPVPWLVVIALAVVVVCWFILRRTTLGVHIYAVGGNMQAARLTGI 218
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSFfLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 219 KVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGMGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTL 298
Cdd:cd06579 161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNL 240
|
250 260
....*....|....*....|...
gi 1994019414 299 MGVSYFWQLVIKGAVIIIAVLID 321
Cdd:cd06579 241 LGVSSFWQQIVKGAILLLAVALD 263
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
5-323 |
8.43e-79 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 245.41 E-value: 8.43e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 5 TTPQQVAKSASAKKMLMSDLMQTVGILPILILIVAVFGFI-APNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDLS 83
Cdd:COG4214 2 STTAAPGGAVRSLRRLLGGDLRSLGMIIALVVIWIVFQILtGGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 84 VGSILGTT-AVAA--MVVSLIPEFamLSVPAALLLGMVLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVIN 160
Cdd:COG4214 82 VGSVSGFVgAVAAvlMVNWGLPWW--LAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 161 SNISFEWIGNNYLGP----------------------------------------------------------------V 176
Cdd:COG4214 160 FDPTFQAIGNGFLPDilgtlswvlgavavaayvalqlrsrrrrrryglpveplwlfvlklallavlilgavyllnsyrgI 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 177 PWLVVIALAVVVVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGMG 256
Cdd:COG4214 240 PIVVLILLVLVVVYTFVLTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTG 319
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1994019414 257 YELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKY 323
Cdd:COG4214 320 FELDAIAAAVIGGTSLFGGVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFDVL 386
|
|
| MglC |
COG4211 |
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and ... |
17-321 |
1.87e-69 |
|
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443358 Cd Length: 336 Bit Score: 219.77 E-value: 1.87e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 17 KKMLMSDLMQTvGILPILILIVAVFGFIAPNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSILGTTAVAA- 95
Cdd:COG4211 6 KKKIKNFLLNN-AIYIVLLLLIIAIIIINPNFLSLRNIRNILTQSSTRMIIALGVAGLIVTQGTDLSAGRMVGLAAVISa 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 96 -------MVVSLIPEFAMLSVPAALLL----GMVLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTV-----I 159
Cdd:COG4211 85 sllqsgdYAGKFFPNLPELPIIVPILIaiaiGALFGLINGFFVAKLKVPPFIATLGTMLIVYGINSIYTDRPGAqpiggL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 160 NSNISFEWIGNNYLGPV--PWLVVIALAVVVVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGL 237
Cdd:COG4211 165 DESFTNFAQGSINIGGFgiPYLIIYAIIVIVIMWFIWNKTKFGKNMYAVGGNPEAAEVSGVNVFKTLIIVYALAGALYGF 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 238 GGVMSASRLYSANGNLGMGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIA 317
Cdd:COG4211 245 AGFLEAARTGSATNNYGNGYELDAIAACVVGGVSFSGGIGKISGVVIGVLIFTVINYGLTFIGVNPYWQYIIKGLIIIAA 324
|
....
gi 1994019414 318 VLID 321
Cdd:COG4211 325 VALD 328
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
17-323 |
8.86e-62 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 199.23 E-value: 8.86e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 17 KKMLMSDLMQTVGILPILILIVAVFGFIAPN-FFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSILGTTAVAA 95
Cdd:PRK09699 1 KPFNFALFWDKYGTFFILAIIVAIFGSLSPEyFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 96 ---MVVSLIPEFAmlSVPAALLLGMVLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSNISFEWIGNNY 172
Cdd:PRK09699 81 aklMLAGVDPFLA--ALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAAS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 173 LGPVPWLVVIALAVVVVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGN 252
Cdd:PRK09699 159 VIGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPL 238
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1994019414 253 LGMGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKY 323
Cdd:PRK09699 239 AGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRL 309
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
15-321 |
5.28e-61 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 197.99 E-value: 5.28e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 15 SAKKMLMSDLMQTVGILPILILIVAVFGFIAPNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSILGTTAVA 94
Cdd:PRK09478 3 ALNKKSFLTYLKEGGIYVVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 95 AM--------VVSLIPEFAMLSVPAALLL----GMVLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLAD--GTTVI- 159
Cdd:PRK09478 83 AAtllqsmdnANKVFPELATMPIALVILIvcaiGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDfvGASPIs 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 160 --NSNISFEWIGNNYLGP--VPWLVVIALAVVVVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLS 235
Cdd:PRK09478 163 gfDSGFSTFAQGFVALGSfrLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFY 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 236 GLGGVMSASRLYSANGNLGMGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVII 315
Cdd:PRK09478 243 AFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIII 322
|
....*.
gi 1994019414 316 IAVLID 321
Cdd:PRK09478 323 FAVALD 328
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
1-326 |
1.80e-57 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 188.73 E-value: 1.80e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 1 MNNPTTPQQVAKSASAKK--MLMSDLMQTVGILPILILIVAVFGFIAPNFFTESNLLNITRQASINIVLAAGMTFIILTG 78
Cdd:PRK11285 1 MSSVSTSGSGAAAAAPPKsrFSLWRIWDQYGMLVVFAVLFIACSLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 79 GIDLSVGSILGTTAVAAMVVSLIPEFAMLSVPAALLLGMVLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTV 158
Cdd:PRK11285 81 DFDLSVASVVAFAGVVTAVVINATESLWLGVAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 159 INSNISFEWIGNNYLGPVPWLVVIALAVVVVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLG 238
Cdd:PRK11285 161 GISDERFFALGYANFFGVPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 239 GVMSASRLYSANGNLGMGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAV 318
Cdd:PRK11285 241 GVILASRMTSGQPMTSIGFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAV 320
|
....*...
gi 1994019414 319 LIDKYRTR 326
Cdd:PRK11285 321 LFDRYKQR 328
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
25-323 |
1.25e-55 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 185.35 E-value: 1.25e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 25 MQTVGILPILILIVAVFGFIAPN-FFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSILG-TTAVAAMvvsLIP 102
Cdd:NF040906 2 LRQYGMLIALVAIVVLFQILTGGiLLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAfVGAVAAV---LMV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 103 EFAM---LSVPAALLLGMVLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSNISFEWIGNNYLGPV--- 176
Cdd:NF040906 79 NWGMpwwLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGFLPDLfgg 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 177 ------------------------------------------------------------------PWLVVIALAVVVVC 190
Cdd:NF040906 159 tglhlltlllgvlaaaalvwsqlrgrrrrikyglevepmalfiaklvliaaailfftyllasyrglPNVLIILGVLILVY 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 191 WFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGMGYELDAIAAVILGGT 270
Cdd:NF040906 239 SFVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGA 318
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1994019414 271 SFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKY 323
Cdd:NF040906 319 SASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVY 371
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
31-327 |
3.97e-39 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 140.47 E-value: 3.97e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 31 LPILI---LIVAVFGFIA---PNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSILG-TTAVAAMVVSLIPE 103
Cdd:PRK11618 6 LPLMItigVFVLGYLFCLvqfPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAfTGVFLAKLIGDYGW 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 104 FAMLSVPAALLLGMVLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVIN-------SNISFEWIGNnylGPV 176
Cdd:PRK11618 86 SPLLAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSEESIPINhpfydtlSSLAWKLPGG---GRL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 177 PWLVVIALAVVVVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGMG 256
Cdd:PRK11618 163 SAMALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVG 242
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1994019414 257 YELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMG-VSYFWQLVIKGAVIIIAVLIDKYRTRH 327
Cdd:PRK11618 243 VELDAIAAVVIGGTLLTGGVGTVLGTLFGVLIQGLIQTYITFDGtLSSWWTKIVIGILLFVFIALQRGLTVL 314
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
21-326 |
1.17e-35 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 132.16 E-value: 1.17e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 21 MSDLMQTVGILPILILIVAVF---GFIAPNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSILGTTAVAAMV 97
Cdd:PRK15432 1 MLKFIQNNRELTALLAIVLLFvllGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 98 VSLIPEFAMLSVPAALLLGMVLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSNISFEWIGNN-YLGPV 176
Cdd:PRK15432 81 LLNAGYSLPVACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPiLLGIS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 177 PWLVVIALAVVVVCWFiLRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGMG 256
Cdd:PRK15432 161 PIGWLTLILILAMAWL-LAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTG 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 257 YELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGaVIIIAVLIDKYRTR 326
Cdd:PRK15432 240 LEMKAIAACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAG-LVLLGVLVFDGRLR 308
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
33-329 |
2.41e-29 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 114.54 E-value: 2.41e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 33 ILILIVAVFGFIAPNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSILGTTAVAAMVVSLIPEFAMLSVPAA 112
Cdd:PRK15038 14 LLVIEILAFGLINPRMLDINVLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSGVPMPLAILLT 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 113 LLLGMVLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADgttvINSNISFEWIG----------NNYLGPVPWLVVI 182
Cdd:PRK15038 94 LLLGALCGLINAGLIIYTGVNPLVITLGTLYLFGGSALLLSG----MAGATGYEGIGgfpmaftdfaNLDVLGLPVPLII 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 183 ALAVVVVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGMGYELDAI 262
Cdd:PRK15038 170 FLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAI 249
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1994019414 263 AAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKYRTRHHQ 329
Cdd:PRK15038 250 TAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVVVGRSVSLHRHQ 316
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
53-318 |
5.26e-27 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 106.96 E-value: 5.26e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 53 NLLNITRQASINIVLAAGMTFII-LTGGIDLSVGSILGTTA-VAAMVVSLIPEFAMLSVPAALLLGMVLGLFNGALVAFA 130
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAyVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 131 GLPPFIVTLGTYTALRGAAYLLADGTTVINSNIS-----FEWIGNNYLGPVPWLVVIALAVVVVCWFILRRTTLGVHIYA 205
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLVTGILGGEGGTSgitgpSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 206 VGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSAN-GNLGMGYELDAIAAVILggtsfvGGIGTITGTLV 284
Cdd:pfam02653 161 VGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPpSNFGVGLGLDAIAAVVL------GGAGSPIGVVI 234
|
250 260 270
....*....|....*....|....*....|....*
gi 1994019414 285 GALIIATLNNGMTLM-GVSYFWQLVIKGAVIIIAV 318
Cdd:pfam02653 235 GSLIIGLVQSLGLGAlGSPPELSLLVLGALLILVL 269
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
62-318 |
2.66e-17 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 80.40 E-value: 2.66e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 62 SINIVLAAGMTFIILTGGI-DLSVGSILGTTAVAAMVVSLIPEFAMLSVPAALLLGMVLGLFNGALVAFAGLPPFIVTLG 140
Cdd:cd06574 2 LIYAILALGVYIVFRILGFpDLTVDGSFPLGAAVAAILIVAGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGIL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 141 TYTALR-------GAAYLLADGTTVINSNISFEWIGNNYLGPVPWLVVIALAVVVVCWFilRRTTLGVHIYAVGGNMQAA 213
Cdd:cd06574 82 IMIGLYsinlrimGGPNIPLGTRDTLLGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWF--LRTKLGLAMRATGDNPDMA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 214 RLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGMGYELDAIAAVILGGTSF--VGGIGTITGTLVGALIIAT 291
Cdd:cd06574 160 RSLGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVgrRTIKASILGVIIGAILYRI 239
|
250 260
....*....|....*....|....*..
gi 1994019414 292 LNNGMTLMGVSYFWQLVIKGAVIIIAV 318
Cdd:cd06574 240 ALALALGSGLIPSDLKLITAGVIVLVL 266
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
54-320 |
8.16e-14 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 70.48 E-value: 8.16e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 54 LLNITRQASINIVLAAGMTFI-ILTGGIDLSVGSILgttAVAAMVVSLIPEFAMLSVPAALLLGMVLGLFNGALVAFA-- 130
Cdd:COG0559 8 LLNGLSLGSIYALIALGLTLIfGVMGVINFAHGEFV---MLGAYVAYTLATLLGLPLWLALLLAVLVAALLGVLLERLvi 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 131 -------GLPPFIVTLGTYTALRGAAYLLADGTTVinsNISFEWIGNNYLGPVP------WLVVIALAVVVVCWFILRRT 197
Cdd:COG0559 85 rplrgapPLALLLATIGLSLVLQGLVLLIFGADPR---SFPALLSGSVELGGVSipayrlFIIVVALVLLAALWLFLRRT 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 198 TLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRlYSANGNLGMGYELDAIAAVILggtsfvGGIG 277
Cdd:COG0559 162 RLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAPI-YSVSPTMGFLLGLKAFAAVVL------GGLG 234
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1994019414 278 TITGTLVGALIIATLNNGMTLMgVSYFWQLVIkGAVIIIAVLI 320
Cdd:COG0559 235 SIPGAVVGGLLLGLAESLGAAY-LPSGYKDVV-AFVLLILVLL 275
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
67-320 |
1.33e-12 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 66.69 E-value: 1.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 67 LAAGMTFII-LTGGIDLSVGSILgttAVAAMVVSLIPEFAMLSVPAALLLGMVLGLFNGALVAFAGLPPF---------I 136
Cdd:cd06582 11 IALGLTLIFgVTGVINFAHGEFY---MLGAYVAYTLLVALGLPFWLALLLALLVAALLGVLLERLVLRPLrgaplltllI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 137 VTLGTYTALRGAAYLLADGTTVINSNI---SFEWIGNNYLGPVPWLVVIALAVVVVCWFILRRTTLGVHIYAVGGNMQAA 213
Cdd:cd06582 88 TFGGLLILLQGLLLIFGGDPRVPPPPLlsgSVELGGVTIPPYRLFIIAVALVLLAALYLFLRRTRLGRAIRAVAQNPEAA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 214 RLTGIKVWLVLLFVYGMSGLLSGLGGVMSASrLYSANGNLGMGYELDAIAAVILggtsfvGGIGTITGTLVGALIIATLN 293
Cdd:cd06582 168 RLLGINVRRVFALTFALGAALAGLAGVLLAP-ITGVSPTMGLLLLLKAFAAVVL------GGLGSIPGAVVGGLLLGLAE 240
|
250 260
....*....|....*....|....*..
gi 1994019414 294 NGMTLMgVSYFWQLVIkGAVIIIAVLI 320
Cdd:cd06582 241 SLAAAY-LSSGYKDAV-AFVLLILVLL 265
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
88-320 |
5.85e-11 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 61.69 E-value: 5.85e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 88 LGTTAVAAMVVSLIPEFAMLSVPAALLLGMVLGLFNGALVAFAGLPPFIVTLG-TYTALRGAAYLLAdgttvinsnisfe 166
Cdd:cd06580 33 FAAALVALYLGLPATGSLPLGLLAAALAGALWALLPALLKAKLGVNEVISGLMlNYIALGLTSYLLL------------- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 167 wignnylgpvpwlvvIALAVVVVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGG-VMSASR 245
Cdd:cd06580 100 ---------------LALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGaYLVLGV 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1994019414 246 LYSANGNLGMGYELDAIAAVILGGTSFVggigtitGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLI 320
Cdd:cd06580 165 QGRFTEGMSAGYGFIAIAVALLGRWNPL-------GILLAALLFGALEAGGIALQRSGGVPSELVQVLPGIIVLF 232
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
87-320 |
8.04e-11 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 62.45 E-value: 8.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 87 ILGTTAVAAMVVSLIPEFAMLSVPAALLLGMVLGLFNGALVAF----AGLPPFIVTLG-TYTALRGAAYLL--------- 152
Cdd:COG4603 94 YLGALAAAAVGLALPGLPGPLHLPLALLAGALAGALWAAIPGLlkarFGVNEVITTLMlNYIALYLVNYLVrgplrdpgs 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 153 -ADGTTVINSNISFEWIGNNYlgPVPWLVVIALAVVVVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMS 231
Cdd:COG4603 174 gFPQTPPIPESARLPRLLPGT--RLHLGLLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLIS 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 232 GLLSGLGGVMS-ASRLYSANGNLGMGYELDAIAAVILGGTSFVggigtitGTLVGALIIATLNNGMTLMGVSYfwQLVIK 310
Cdd:COG4603 252 GALAGLAGAVEvLGVQGRLTPGFSPGYGFTGIAVALLGRNNPL-------GIILAALLFGALYVGGDAMQRAL--GVPSE 322
|
250
....*....|
gi 1994019414 311 GAVIIIAVLI 320
Cdd:COG4603 323 IVDVIQGLII 332
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
54-319 |
1.73e-10 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 60.87 E-value: 1.73e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 54 LLNITRQASINIVLAAGMTFIILTGGIdLSVGSIlGTTAVAAMVVSLIPEFAMLSVPAALLLGMVLGLFNGALVAFAGL- 132
Cdd:COG4177 4 YLSLLTLILIYAILALGLNLLLGYTGL-LSLGHA-AFFGIGAYAAALLTTHLGLPFWLALLLAGLVAALLGLLIGLPALr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 133 ---PPF-IVTLGTYTALRGAAYLLAD---GTTVINSNISFEWIGNNYLGPVPWLVVIALAVVVVCWFI--LRRTTLGVHI 203
Cdd:COG4177 82 lrgDYLaIATLAFAEIVRLLALNLESltgGADGLSGIPRPTLFGLDLGSPLAFYYLVLALLVLVLLLLrrLVRSRFGRAL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 204 YAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSAN-GNLGMGYELDAIAAVILggtsfvGGIGTITGT 282
Cdd:COG4177 162 RAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSpESFSFLLSIEILLMVVL------GGLGSLLGP 235
|
250 260 270
....*....|....*....|....*....|....*..
gi 1994019414 283 LVGALIIATLNNGMTLMGvsyFWQLVIKGAVIIIAVL 319
Cdd:COG4177 236 VLGAVLLVLLPELLRSLP---EYRLLIFGLLLILVVL 269
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
63-319 |
4.44e-10 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 59.38 E-value: 4.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 63 INIVLAAGMTFIILTGGIdLSVGSIlGTTAVAAMVVSLIPEFAMLSVPAALLLGMVLGLFNGALVAFAGL----PPF-IV 137
Cdd:cd06581 3 IYAILALGLNLLLGYAGQ-LSLGHA-AFFGIGAYTAALLATRLGLPFWLALLAAGLVAALVGLLLGLPALrlrgVYFaIA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 138 TLGTYTALRGAAYLL------ADGTTVINSnISFEWIGNNYLGPVPWLVVIALAVVVVCWFILRRTTLGVHIYAVGGNMQ 211
Cdd:cd06581 81 TLAFAEIVRLLALNWssltggSNGLSGIPP-PLLGGLLLSSPLAFYYLVLAVLLLVLLLLRRLVRSPFGRALRAIRENEV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994019414 212 AARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSAN-GNLGMGYELDAIAAVIlggtsfVGGIGTITGTLVGALIIA 290
Cdd:cd06581 160 AAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSpESFGFALSIELLLMVV------LGGLGSLLGPVLGAALLV 233
|
250 260
....*....|....*....|....*....
gi 1994019414 291 TLNNGmtLMGVSYFWQLVIKGAVIIIAVL 319
Cdd:cd06581 234 LLPEL--LRSLGPGLRLLVFGLLLILVVL 260
|
|
| |
