|
Name |
Accession |
Description |
Interval |
E-value |
| nickel_nikC |
TIGR02790 |
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ... |
32-272 |
3.02e-122 |
|
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131837 [Multi-domain] Cd Length: 258 Bit Score: 349.38 E-value: 3.02e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 32 APWIAPHDPATVNLAMKLKGSSWEYPLGTDQLGRCNLSRILYGARISLGCALLIFVSSLSIGLIVGLISGYKGGWIDHVL 111
Cdd:TIGR02790 18 APWIAPHDPLAQNLPMRLLGPSMEYWLGTDHLGRCIFSRLIFGARVSLGSALLVLGLVLTIGLLIGGLAGYIGGRVDEAI 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 112 MRLCDGVMAFPNLVLILGLVGIFGPGLSQVVLALMLVQWVYYARVFRGMVLSLKEQNFIAAAKISGTSHWNIMRKHMIPN 191
Cdd:TIGR02790 98 MRVCDVFLSFPTIILSLAIVGILGPGLENVIIAIVLVHWAWYARMVRGMVVSLKQREFVLAARTSGASHWQIIRRHILPN 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 192 VLPPLAVVGTLEMGWAIMDISAMSFLGLGVQPPTPEWGAMIHEGKSYIQTNPQLMLYPGLVIMAVVILFNLLGEALSEKY 271
Cdd:TIGR02790 178 ILSPIIVLATLDIGHVILHIAGLSFLGLGIQPPTPEWGAMLSEAKQYIWTQPLLMIYPGLAILISVMAFNLLGDALRDHL 257
|
.
gi 1996338620 272 G 272
Cdd:TIGR02790 258 G 258
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
32-269 |
1.20e-112 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 325.53 E-value: 1.20e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 32 APWIAPHDPATVNLAMKLKGSSWEYPLGTDQLGRCNLSRILYGARISLGCALLIFVSSLSIGLIVGLISGYKGGWIDHVL 111
Cdd:COG1173 35 APLLAPYDPTAQDLAARLQPPSAAHWLGTDQLGRDVLSRLLYGARISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 112 MRLCDGVMAFPNLVLILGLVGIFGPGLSQVVLALMLVQWVYYARVFRGMVLSLKEQNFIAAAKISGTSHWNIMRKHMIPN 191
Cdd:COG1173 115 MRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPN 194
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1996338620 192 VLPPLAVVGTLEMGWAIMDISAMSFLGLGVQPPTPEWGAMIHEGKSYIQTNPQLMLYPGLVIMAVVILFNLLGEALSE 269
Cdd:COG1173 195 VLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTMLSEGRNYLLTAPWLALFPGLAIVLTVLAFNLLGDGLRD 272
|
|
| nikC |
PRK10417 |
nickel transporter permease NikC; Provisional |
32-270 |
7.69e-92 |
|
nickel transporter permease NikC; Provisional
Pssm-ID: 236687 [Multi-domain] Cd Length: 272 Bit Score: 272.70 E-value: 7.69e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 32 APWIAPHDPATVNLAMKLKGSSWEYPLGTDQLGRCNLSRILYGARISLGCALLIFVSSLSIGLIVGLISGYKGGWIDHVL 111
Cdd:PRK10417 23 SQWWLPYDPQAIDLPSRLLSPDAQHWLGTDHLGRDIFSRLMAGTRVSLGSVMACLLLVLALGLVIGGSAGLLGGRVDQAT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 112 MRLCDGVMAFPNLVLILGLVGIFGPGLSQVVLALMLVQWVYYARVFRGMVLSLKEQNFIAAAKISGTSHWNIMRKHMIPN 191
Cdd:PRK10417 103 MRVADMFMTFPTSILAFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLAARLSGAGHVRVFIDHLLPA 182
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1996338620 192 VLPPLAVVGTLEMGWAIMDISAMSFLGLGVQPPTPEWGAMIHEGKSYIQTNPQLMLYPGLVIMAVVILFNLLGEALSEK 270
Cdd:PRK10417 183 VIPQLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMINDARQYIWTQPLLMFWPGLALFISVMAFNLLGDALRDH 261
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
75-260 |
6.93e-21 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 87.33 E-value: 6.93e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 75 ARISLGCALLIFVSSLSIGLIVGLISGYKGGWIDHVLMRLCDGVMAFPNLVLILGLVGIFGPGLSQ--------VVLALM 146
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWgilpglglPALILA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 147 LVQWVYYARVFRGMVLSLKEQNFIAAAKISGTSHWNIMRKHMIPNVLPPLAVVGTLEMGWAIMDISAMSFLGLGVqPPTP 226
Cdd:cd06261 81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGE-APGP 159
|
170 180 190
....*....|....*....|....*....|....
gi 1996338620 227 EWGAMIhegksyIQTNPQLMLYPGLVIMAVVILF 260
Cdd:cd06261 160 GTGLLL------IFAILFPGDLGVAAAVALILLL 187
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
93-267 |
5.46e-19 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 81.96 E-value: 5.46e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 93 GLIVGLISG-YKGGWIDHVLMRLCDGVMAFPNLVLILGLVGIFGPGLSQV----VLALMLVQWVYYARVFRGMVLSLKEQ 167
Cdd:pfam00528 1 GIPLGIIAAlRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHgilpAIILALLGWAGYARLIRRAALRSLPS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 168 NFIAAAKISGTSHWNIMRKHMIPNVLPPLAVVGTLEMGWAIMDISAMSFL----GLGVQPPTPEWGAMIHEGKSYiqtnp 243
Cdd:pfam00528 81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYPEIQGP----- 155
|
170 180
....*....|....*....|....
gi 1996338620 244 qlMLYPGLVIMAVVILFNLLGEAL 267
Cdd:pfam00528 156 --VLAAALILLLLNLLVDILQRLL 177
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| nickel_nikC |
TIGR02790 |
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ... |
32-272 |
3.02e-122 |
|
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131837 [Multi-domain] Cd Length: 258 Bit Score: 349.38 E-value: 3.02e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 32 APWIAPHDPATVNLAMKLKGSSWEYPLGTDQLGRCNLSRILYGARISLGCALLIFVSSLSIGLIVGLISGYKGGWIDHVL 111
Cdd:TIGR02790 18 APWIAPHDPLAQNLPMRLLGPSMEYWLGTDHLGRCIFSRLIFGARVSLGSALLVLGLVLTIGLLIGGLAGYIGGRVDEAI 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 112 MRLCDGVMAFPNLVLILGLVGIFGPGLSQVVLALMLVQWVYYARVFRGMVLSLKEQNFIAAAKISGTSHWNIMRKHMIPN 191
Cdd:TIGR02790 98 MRVCDVFLSFPTIILSLAIVGILGPGLENVIIAIVLVHWAWYARMVRGMVVSLKQREFVLAARTSGASHWQIIRRHILPN 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 192 VLPPLAVVGTLEMGWAIMDISAMSFLGLGVQPPTPEWGAMIHEGKSYIQTNPQLMLYPGLVIMAVVILFNLLGEALSEKY 271
Cdd:TIGR02790 178 ILSPIIVLATLDIGHVILHIAGLSFLGLGIQPPTPEWGAMLSEAKQYIWTQPLLMIYPGLAILISVMAFNLLGDALRDHL 257
|
.
gi 1996338620 272 G 272
Cdd:TIGR02790 258 G 258
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
32-269 |
1.20e-112 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 325.53 E-value: 1.20e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 32 APWIAPHDPATVNLAMKLKGSSWEYPLGTDQLGRCNLSRILYGARISLGCALLIFVSSLSIGLIVGLISGYKGGWIDHVL 111
Cdd:COG1173 35 APLLAPYDPTAQDLAARLQPPSAAHWLGTDQLGRDVLSRLLYGARISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 112 MRLCDGVMAFPNLVLILGLVGIFGPGLSQVVLALMLVQWVYYARVFRGMVLSLKEQNFIAAAKISGTSHWNIMRKHMIPN 191
Cdd:COG1173 115 MRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPN 194
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1996338620 192 VLPPLAVVGTLEMGWAIMDISAMSFLGLGVQPPTPEWGAMIHEGKSYIQTNPQLMLYPGLVIMAVVILFNLLGEALSE 269
Cdd:COG1173 195 VLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTMLSEGRNYLLTAPWLALFPGLAIVLTVLAFNLLGDGLRD 272
|
|
| nikC |
PRK10417 |
nickel transporter permease NikC; Provisional |
32-270 |
7.69e-92 |
|
nickel transporter permease NikC; Provisional
Pssm-ID: 236687 [Multi-domain] Cd Length: 272 Bit Score: 272.70 E-value: 7.69e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 32 APWIAPHDPATVNLAMKLKGSSWEYPLGTDQLGRCNLSRILYGARISLGCALLIFVSSLSIGLIVGLISGYKGGWIDHVL 111
Cdd:PRK10417 23 SQWWLPYDPQAIDLPSRLLSPDAQHWLGTDHLGRDIFSRLMAGTRVSLGSVMACLLLVLALGLVIGGSAGLLGGRVDQAT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 112 MRLCDGVMAFPNLVLILGLVGIFGPGLSQVVLALMLVQWVYYARVFRGMVLSLKEQNFIAAAKISGTSHWNIMRKHMIPN 191
Cdd:PRK10417 103 MRVADMFMTFPTSILAFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLAARLSGAGHVRVFIDHLLPA 182
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1996338620 192 VLPPLAVVGTLEMGWAIMDISAMSFLGLGVQPPTPEWGAMIHEGKSYIQTNPQLMLYPGLVIMAVVILFNLLGEALSEK 270
Cdd:PRK10417 183 VIPQLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMINDARQYIWTQPLLMFWPGLALFISVMAFNLLGDALRDH 261
|
|
| PRK09881 |
PRK09881 |
D,D-dipeptide ABC transporter permease; |
32-267 |
6.36e-64 |
|
D,D-dipeptide ABC transporter permease;
Pssm-ID: 182131 [Multi-domain] Cd Length: 296 Bit Score: 202.35 E-value: 6.36e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 32 APWIAPHDPATVNLAMKLKGSSWEYPLGTDQLGRCNLSRILYGARISLGCALLIFVSSLSIGLIVGLISGYKGGWIDHVL 111
Cdd:PRK09881 50 SPWLATHDPNAIDLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAII 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 112 MRLCDGVMAFPNLVLILGLVGIFGPGLSQVVLALMLVQWVYYARVFRGMVLSLKEQNFIAAAKISGTSHWNIMRKHMIPN 191
Cdd:PRK09881 130 MRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRN 209
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1996338620 192 VLPPLAVVGTLEMGWAIMDISAMSFLGLGVQPPTPEWGAMIHEGKSYIQTNPQLMLYPGLVIMAVVILFNLLGEAL 267
Cdd:PRK09881 210 SLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGFNLFGDGI 285
|
|
| PRK15082 |
PRK15082 |
glutathione ABC transporter permease GsiD; Provisional |
32-267 |
1.82e-62 |
|
glutathione ABC transporter permease GsiD; Provisional
Pssm-ID: 185040 [Multi-domain] Cd Length: 301 Bit Score: 198.80 E-value: 1.82e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 32 APWIAPHDPATVNLAMKL-KGSSWEYPLGTDQLGRCNLSRILYGARISLGCALLIFVSSLSIGLIVGLISGYKGGWIDHV 110
Cdd:PRK15082 55 APWIAPYDAENYFDYDALnAGPSLQHWFGVDSLGRDIFSRILVGARISLAAGFFSVAIGAAIGTVLGLLAGYYEGWWDRI 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 111 LMRLCDGVMAFPNLVLILGLVGIFGPGLSQVVLALMLVQWVYYARVFRGMVLSLKEQNFIAAAKISGTSHWNIMRKHMIP 190
Cdd:PRK15082 135 IMRICDVLFAFPGILLAIAVVAILGSGMANVIIAVAIFSIPAFARLVRGNTLVLKQQTYIESARSIGASDWTILLRHILP 214
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1996338620 191 NVLPPLAVVGTLEMGWAIMDISAMSFLGLGVQPPTPEWGAMIHEGKSYIQTNPQLMLYPGLVIMAVVILFNLLGEAL 267
Cdd:PRK15082 215 GTVSSIVVYFTMRIGTSIITAASLSFLGLGAQPPTPEWGAMLNEARADMVIAPHVALFPSLAIFLTVLAFNLLGDGL 291
|
|
| PRK10913 |
PRK10913 |
dipeptide ABC transporter permease DppC; |
32-267 |
4.65e-56 |
|
dipeptide ABC transporter permease DppC;
Pssm-ID: 182833 [Multi-domain] Cd Length: 300 Bit Score: 182.29 E-value: 4.65e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 32 APWIAPHDPATVNLAMKLK------GSSWEYPLGTDQLGRCNLSRILYGARISLGCALLIFVSSLSIGLIVGLISGYKGG 105
Cdd:PRK10913 49 ANWIAPHNPAEQFRDALLAppvwqeGGSWAHILGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLVMGVILGLIAGYFGG 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 106 WIDHVLMRLCDGVMAFPNLVLILGLVGIFGPGLSQVVLALMLVQWVYYARVFRGMVLSLKEQNFIAAAKISGTSHWNIMR 185
Cdd:PRK10913 129 LVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIVNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMF 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 186 KHMIPNVLPPLAVVGTLEMGWAIMDISAMSFLGLGVQPPTPEWGAMIHEGKSYIQTNPQLMLYPGLVIMAVVILFNLLGE 265
Cdd:PRK10913 209 INILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGD 288
|
..
gi 1996338620 266 AL 267
Cdd:PRK10913 289 GL 290
|
|
| SapC |
COG4171 |
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms]; |
32-267 |
2.27e-52 |
|
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];
Pssm-ID: 443331 [Multi-domain] Cd Length: 296 Bit Score: 172.69 E-value: 2.27e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 32 APWIAPHDPATVNLAMKLKGSSWE------YPLGTDQLGRCNLSRILYGARISLGCALLIFVSSLSIGLIVGLISGYKGG 105
Cdd:COG4171 46 GPLLAPYSPDQQFIGALLLPPSWDdngdvsFFLGTDDLGRDILSRLLYGARYTFGSALLVVLAAAIIGGIIGILAGMSRG 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 106 WIDHVLMRLCDGVMAFPNLVLILGLVGIFGPGLSQVVLALMLVQWVYYARVFRGMVLSLKEQNFIAAAKISGTSHWNIMR 185
Cdd:COG4171 126 LKSSILNHLLDTLLSIPSLLLAIIIVALLGPGLENAMLAITLALLPQFIHAIYQAVHQELKKEYVLAARLDGASNWQLLR 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 186 KHMIPNVLPPLAVVGTLEMGWAIMDISAMSFLGLGVQPPTPEWGAMIHEGKSYIQTNPQLMLYPGLVIMAVVILFNLLGE 265
Cdd:COG4171 206 YSILPNILEVLVTELTRALSIAILDISALGFLGLGAQLPSPEWGAMLGDSLELIYLAPWTVILPGLAIMFSVLIVNLVGD 285
|
..
gi 1996338620 266 AL 267
Cdd:COG4171 286 GL 287
|
|
| PRK15406 |
PRK15406 |
oligopeptide ABC transporter permease OppC; Provisional |
32-276 |
3.77e-41 |
|
oligopeptide ABC transporter permease OppC; Provisional
Pssm-ID: 185304 [Multi-domain] Cd Length: 302 Bit Score: 143.82 E-value: 3.77e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 32 APWIAPHDPATVNLAMKLKGSSWE--YPLGTDQLGRCNLSRILYGARISLGCALLIFVSSLSIGLIVGLISGYKGGWIDH 109
Cdd:PRK15406 56 APMLSQFAYDDTDWGMMSSAPDMEsgHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDS 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 110 VLMRLCDGVMAFPNLVLILGLVGIFGPGLSQVVLALMLVQWVYYARVFRGMVLSLKEQNFIAAAKISGTSHWNIMRKHMI 189
Cdd:PRK15406 136 VMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTRGIVLRHIV 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 190 PNVLPPLAVVGTLEMGWAIMDISAMSFLGLGVQPPTPEWGAMIHEGKSYIQTNPQLMLYPGLVIMAVVILFNLLGEALSE 269
Cdd:PRK15406 216 PNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRD 295
|
....*..
gi 1996338620 270 KYGIKRR 276
Cdd:PRK15406 296 ALDPKDR 302
|
|
| PRK15111 |
PRK15111 |
peptide ABC transporter permease SapC; |
7-267 |
1.74e-36 |
|
peptide ABC transporter permease SapC;
Pssm-ID: 185066 [Multi-domain] Cd Length: 296 Bit Score: 131.36 E-value: 1.74e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 7 HLFYHQKMISICVVLLGLLLIVTVCAPWIAPHDPATVNLAMKLKGSSWE------YPLGTDQLGRCNLSRILYGARISLG 80
Cdd:PRK15111 21 RKFYSDALAMVGLYGCAGLALLCLFGGWLAPYGIDQQFLGYQLLPPSWSrygevsFFLGTDDLGRDVLSRLLSGAAPTVG 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 81 CALLIFVSSLSIGLIVGLISGYKGGWIDHVLMRLCDGVMAFPNLVLILGLVGIFGPGLSQVVLALMLVQWVYYARVFRGM 160
Cdd:PRK15111 101 GAFVVTLAATLCGLVLGVFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPSLSHAMFAVWLALLPRMVRSIYSA 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 161 VLSLKEQNFIAAAKISGTSHWNIMRKHMIPNVLPPLAVVGTLEMGWAIMDISAMSFLGLGVQPPTPEWGAMIHEGKSYIQ 240
Cdd:PRK15111 181 VHDELEKEYVIAARLDGASTLNILWYAVLPNITAGLVTEITRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDSLELIY 260
|
250 260
....*....|....*....|....*..
gi 1996338620 241 TNPQLMLYPGLVIMAVVILFNLLGEAL 267
Cdd:PRK15111 261 VAPWTVMLPGAAIMLSVLLVNLLGDGI 287
|
|
| PRK15021 |
PRK15021 |
microcin C ABC transporter permease; Provisional |
58-271 |
9.28e-24 |
|
microcin C ABC transporter permease; Provisional
Pssm-ID: 184982 [Multi-domain] Cd Length: 341 Bit Score: 98.52 E-value: 9.28e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 58 LGTDQLGRCNLSRILYGARISLGCALLIFVSSLSIGLIVGLISGYKGGWIDHVLMRLCDGVMAFPNLVLILGLVGIFGPG 137
Cdd:PRK15021 123 LGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFIEVWSGMPTLFLIILLSSVVQPN 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 138 LSQVVLALMLVQWVYYARVFRGMVLSLKEQNFIAAAKISGTSHWNIMRKHMIPNvlpplAVVGTLE-----MGWAIMDIS 212
Cdd:PRK15021 203 FWWLLAITVLFGWMSLVGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPN-----AMVATLTflpfiLCSSITTLT 277
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1996338620 213 AMSFLGLGVQPPTPEWGAMIHEGKSYIQTnPQLMLYPGLVIMAVVILFNLLGEALSEKY 271
Cdd:PRK15021 278 SLDFLGFGLPLGSPSLGELLLQGKNNLQA-PWLGITAFLSVAILLSLLIFIGEAVRDAF 335
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
75-260 |
6.93e-21 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 87.33 E-value: 6.93e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 75 ARISLGCALLIFVSSLSIGLIVGLISGYKGGWIDHVLMRLCDGVMAFPNLVLILGLVGIFGPGLSQ--------VVLALM 146
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWgilpglglPALILA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 147 LVQWVYYARVFRGMVLSLKEQNFIAAAKISGTSHWNIMRKHMIPNVLPPLAVVGTLEMGWAIMDISAMSFLGLGVqPPTP 226
Cdd:cd06261 81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGE-APGP 159
|
170 180 190
....*....|....*....|....*....|....
gi 1996338620 227 EWGAMIhegksyIQTNPQLMLYPGLVIMAVVILF 260
Cdd:cd06261 160 GTGLLL------IFAILFPGDLGVAAAVALILLL 187
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
93-267 |
5.46e-19 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 81.96 E-value: 5.46e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 93 GLIVGLISG-YKGGWIDHVLMRLCDGVMAFPNLVLILGLVGIFGPGLSQV----VLALMLVQWVYYARVFRGMVLSLKEQ 167
Cdd:pfam00528 1 GIPLGIIAAlRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHgilpAIILALLGWAGYARLIRRAALRSLPS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 168 NFIAAAKISGTSHWNIMRKHMIPNVLPPLAVVGTLEMGWAIMDISAMSFL----GLGVQPPTPEWGAMIHEGKSYiqtnp 243
Cdd:pfam00528 81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYPEIQGP----- 155
|
170 180
....*....|....*....|....
gi 1996338620 244 qlMLYPGLVIMAVVILFNLLGEAL 267
Cdd:pfam00528 156 --VLAAALILLLLNLLVDILQRLL 177
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
80-208 |
1.30e-12 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 66.63 E-value: 1.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 80 GCALLIfvsSLSIGLIVGLISGYK-GGWIDHVLMRLCDGVMAFPNLVLILGLVGIFG-------------------PGLS 139
Cdd:COG0601 103 LLALLL---ALLIGIPLGILAALRrGSWLDRLITVLALLGISIPSFWLGLLLILLFAvklgwlpvsgrvspwedflDALR 179
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1996338620 140 QVVL---ALMLVQWVYYARVFRGMVLSLKEQNFIAAAKISGTSHWNIMRKHMIPNVLPPLAVVGTLEMGWAI 208
Cdd:COG0601 180 HLILpalTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTVLGLQLGGLL 251
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
76-202 |
2.26e-03 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 38.99 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1996338620 76 RISLGCALLifvsSLSIGLIVGLISGYKGGWIDHVLMRLCDGVMAFPNLVLILGLV----GIFGPGLSQVVLALMLVQWV 151
Cdd:COG1178 345 LLALLAALL----AVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLllfnRPLPLLLYGTLAILVLAYVV 420
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1996338620 152 -YYARVFRGMVLSLKE--QNFIAAAKISGTSHWNIMRKHMIPNVLPPLAVVGTL 202
Cdd:COG1178 421 rFLPFALRSLEAALAQidPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALL 474
|
|
| |
