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Conserved domains on  [gi|2006098370|gb|QSX20570|]
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DUF2198 family protein [Priestia megaterium]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2198 super family cl23972
Uncharacterized protein conserved in bacteria (DUF2198); This domain, found in various ...
 1-70 1.89e-15

Uncharacterized protein conserved in bacteria (DUF2198); This domain, found in various hypothetical bacterial proteins, has no known function.


The actual alignment was detected with superfamily member COG4897:

Pssm-ID: 474118  Cd Length: 77  Bit Score: 63.83  E-value: 1.89e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2006098370  1 MEVKTIAAVFLPAILLVLFARVTYNLYVATALTLLLIAVSVYKGYADYPLIILIDLLSAAIGFIYAKSML 70
Cdd:COG4897    1 MITWYVLALFLPALLVILFTRVTYNHYVGLLLTVALIGASVYKGYTHSEWIIILDAASLTAGFLYATRMN 70
 
Name Accession Description Interval E-value
CsbA COG4897
General stress protein CsbA (function unknown) [Function unknown];
1-70 1.89e-15

General stress protein CsbA (function unknown) [Function unknown];


Pssm-ID: 443925  Cd Length: 77  Bit Score: 63.83  E-value: 1.89e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2006098370  1 MEVKTIAAVFLPAILLVLFARVTYNLYVATALTLLLIAVSVYKGYADYPLIILIDLLSAAIGFIYAKSML 70
Cdd:COG4897    1 MITWYVLALFLPALLVILFTRVTYNHYVGLLLTVALIGASVYKGYTHSEWIIILDAASLTAGFLYATRMN 70
DUF2198 pfam09964
Uncharacterized protein conserved in bacteria (DUF2198); This domain, found in various ...
 4-70 2.84e-12

Uncharacterized protein conserved in bacteria (DUF2198); This domain, found in various hypothetical bacterial proteins, has no known function.


Pssm-ID: 401803  Cd Length: 72  Bit Score: 55.75  E-value: 2.84e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2006098370  4 KTIAAVFLPAILLVLFARVTYNLYVATALTLLLIAVSVYKGYADYPLIILIDLLSAAIGFIYAKSML 70
Cdd:pfam09964  1 WFVSALIFPCLLVVLFTRVTYNHYIGLLLTVALIVASYYKGYTDTWWIIIIDAASLTAGFLYAKRML 67
 
Name Accession Description Interval E-value
CsbA COG4897
General stress protein CsbA (function unknown) [Function unknown];
1-70 1.89e-15

General stress protein CsbA (function unknown) [Function unknown];


Pssm-ID: 443925  Cd Length: 77  Bit Score: 63.83  E-value: 1.89e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2006098370  1 MEVKTIAAVFLPAILLVLFARVTYNLYVATALTLLLIAVSVYKGYADYPLIILIDLLSAAIGFIYAKSML 70
Cdd:COG4897    1 MITWYVLALFLPALLVILFTRVTYNHYVGLLLTVALIGASVYKGYTHSEWIIILDAASLTAGFLYATRMN 70
DUF2198 pfam09964
Uncharacterized protein conserved in bacteria (DUF2198); This domain, found in various ...
 4-70 2.84e-12

Uncharacterized protein conserved in bacteria (DUF2198); This domain, found in various hypothetical bacterial proteins, has no known function.


Pssm-ID: 401803  Cd Length: 72  Bit Score: 55.75  E-value: 2.84e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2006098370  4 KTIAAVFLPAILLVLFARVTYNLYVATALTLLLIAVSVYKGYADYPLIILIDLLSAAIGFIYAKSML 70
Cdd:pfam09964  1 WFVSALIFPCLLVVLFTRVTYNHYIGLLLTVALIVASYYKGYTDTWWIIIIDAASLTAGFLYAKRML 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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