|
Name |
Accession |
Description |
Interval |
E-value |
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
13-249 |
2.05e-70 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 216.43 E-value: 2.05e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 13 TVCISAIFAAACQTTAPT---LGQKDPEKAVQVRTQLAAEYLKNGDLDSAKRALDQALESDSRDSTANMMMGVLLQQEGs 89
Cdd:TIGR02521 1 LALVFLLALTGCVTTPDVprsSRTTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLG- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 90 klNLEKADAYFKRAIAADPKNAQARNNYGTYLYQVERYNDAIEQLSIAGATLGYDQRFRALENVGRIYLKLGDIENAEKS 169
Cdd:TIGR02521 80 --ELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 170 FKQALQANRDSYVSMLELSEILYLRQQFAPARQLYEQFVRAvgqKNQGARALWIGIRLARANGDQLGTQVLVNQLRALFP 249
Cdd:TIGR02521 158 LTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT---YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
40-261 |
7.29e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 80.44 E-value: 7.29e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 40 VQVRTQLAAEYLKNGDLDSAKRALDQALESDSRDSTANMMMGVLLQQEGsklNLEKADAYFKRAIAADPKNAQARNNYGT 119
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLG---RYEEALADYEQALELDPDDAEALNNLGL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 120 YLYQVERYNDAIEQLSIAGATLGYDqrFRALENVGRIYLKLGDIENAEKSFKQALQANRDSYVSMLELSEILYLRQQFAP 199
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDD--AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2013110297 200 ARQLYEQFVRAVGQKNQGARALWIGIRLARANGDQLGTQVLVNQLRALFPNSQEYQRYLQLQ 261
Cdd:COG0457 163 ALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
33-260 |
8.47e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 80.54 E-value: 8.47e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 33 QKDPEkAVQVRTQLAAEYLKNGDLDSAKRALDQALESDSRDSTANMMMGVLLQQEGsklNLEKADAYFKRAIAADPKNAQ 112
Cdd:COG2956 36 ELDPE-TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG---LLDRAEELLEKLLELDPDDAE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 113 ARNNYGTYLYQVERYNDAIEQLSIAGATlgYDQRFRALENVGRIYLKLGDIENAEKSFKQALQANRDSYVSMLELSEILY 192
Cdd:COG2956 112 ALRLLAEIYEQEGDWEKAIEVLERLLKL--GPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYL 189
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2013110297 193 LRQQFAPARQLYEQFVRAVGQKNQGARALwigIRLARANGDQLGTQVLVNQLRALFPNSQEYQRYLQL 260
Cdd:COG2956 190 EQGDYEEAIAALERALEQDPDYLPALPRL---AELYEKLGDPEEALELLRKALELDPSDDLLLALADL 254
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
45-262 |
1.22e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 77.46 E-value: 1.22e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 45 QLAAEYLKNGDLDSAKRALDQALESDSRDSTANMMMGVLLQQEGsklNLEKADAYFKRAIAADPKNAQARNNYGTYLYQV 124
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRG---EYDRAIRIHQKLLERDPDRAEALLELAQDYLKA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 125 ERYNDAIEQLSIAGATlgYDQRFRALENVGRIYLKLGDIENAEKSFKQALQANRDSYVSMLELSEILYLRQQFAPARQLY 204
Cdd:COG2956 90 GLLDRAEELLEKLLEL--DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2013110297 205 EQfvrAVGQKNQGARALWIGIRLARANGDQLGTQVLVNQLRALFPNSQEYQRYLQLQY 262
Cdd:COG2956 168 EK---ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELY 222
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
34-210 |
1.73e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 77.08 E-value: 1.73e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 34 KDPEKAVQVRTQLAAEYLKNGDLDSAKRALDQALESDSRDSTANMMMGVLLQQEGsklNLEKADAYFKRAIAADPKNAQA 113
Cdd:COG2956 104 ELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQG---DYDEAIEALEKALKLDPDCARA 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 114 RNNYGTYLYQVERYNDAIEQLSIAGATlgYDQRFRALENVGRIYLKLGDIENAEKSFKQALQANRDSYVsMLELSEILYL 193
Cdd:COG2956 181 LLLLAELYLEQGDYEEAIAALERALEQ--DPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL-LLALADLLER 257
|
170
....*....|....*..
gi 2013110297 194 RQQFAPARQLYEQFVRA 210
Cdd:COG2956 258 KEGLEAALALLERQLRR 274
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
39-180 |
1.52e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 71.38 E-value: 1.52e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 39 AVQVRTQLAAEYLKNGDLDSAKRALDQALESDSRDSTANMMMGVLLQQEGsklNLEKADAYFKRAIAADPKNAQARNNYG 118
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLG---DLDEAIVLLHEALELDPDEPEARLNLG 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2013110297 119 TYLYQVERYNDAIEQLSIAGATlgYDQRFRALENVGRIYLKLGDIENAEKSFKQALQANRDS 180
Cdd:COG4783 80 LALLKAGDYDEALALLEKALKL--DPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
46-209 |
1.30e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 64.24 E-value: 1.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 46 LAAEYLKNGDLDSAKRALDQALESDSRDSTANMMMGVLLQQEGSKL----NLEKADAYFKRAIAADPKNAQARNNYGTYL 121
Cdd:COG3914 43 LALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLqalgRYEEALALYRRALALNPDNAEALFNLGNLL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 122 YQVERYNDAIEQLSIAgatLGYDQRF-RALENVGRIYLKLGDIENAEKSFKQALQANRDSYVSMLELSEILYLRQQFAPA 200
Cdd:COG3914 123 LALGRLEEALAALRRA---LALNPDFaEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEA 199
|
....*....
gi 2013110297 201 RQLYEQFVR 209
Cdd:COG3914 200 IAAYRRALE 208
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
33-152 |
5.18e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 58.86 E-value: 5.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 33 QKDPEKAvQVRTQLAAEYLKNGDLDSAKRALDQALESDSRDSTANMMMGVLLQQEGsklNLEKADAYFKRAIAADPKNAQ 112
Cdd:COG4235 11 AANPNDA-EGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAG---DTEEAEELLERALALDPDNPE 86
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2013110297 113 ARNNYGTYLYQVERYNDAIEQLSIAGATLGYDQRFRALEN 152
Cdd:COG4235 87 ALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEA 126
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
35-255 |
9.90e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 60.41 E-value: 9.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 35 DPEKAvQVRTQLAAEYLKNGDLDSAKRALDQALESDSRDSTANMMMGVLLQQEGsklNLEKADAYFKRAIAADPKNAQAR 114
Cdd:COG0457 38 DPDDA-EALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG---RYEEALEDYDKALELDPDDAEAL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 115 NNYGTYLYQVERYNDAIEQlsiagatlgYDQRFRALENVGRIYLKLGDIENAEKSFKQALQANRDSYVSMLELSEILYLR 194
Cdd:COG0457 114 YNLGLALLELGRYDEAIEA---------YERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALG 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2013110297 195 QQFAPARQLYEQFVRAVGQKNQGARALWIGIRLARANGDQLGTQVLVNQLRALFPNSQEYQ 255
Cdd:COG0457 185 EAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
37-260 |
4.25e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 59.71 E-value: 4.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 37 EKAVQVRTQLAAEYLKNGDLDSAKRALDQALESDSRDSTANMMMGVLLQQEGsklNLEKADAYFKRAIAADPKNAQARNN 116
Cdd:TIGR02917 326 PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALG---DFEKAAEYLAKATELDPENAAARTQ 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 117 YGTYLYQVERYNDAIEQLSIAGAT------------LGYDQRFR------ALEN--------------VGRIYLKLGDIE 164
Cdd:TIGR02917 403 LGISKLSQGDPSEAIADLETAAQLdpelgradllliLSYLRSGQfdkalaAAKKlekkqpdnaslhnlLGAIYLGKGDLA 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 165 NAEKSFKQALQANRDSYVSMLELSEILYLRQQFAPARQLYEQFVRAVGQKNQGARALwigIRLARANGDQLGTQVLVNQL 244
Cdd:TIGR02917 483 KAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILAL---AGLYLRTGNEEEAVAWLEKA 559
|
250
....*....|....*.
gi 2013110297 245 RALfpNSQEYQRYLQL 260
Cdd:TIGR02917 560 AEL--NPQEIEPALAL 573
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
59-177 |
4.50e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 53.47 E-value: 4.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 59 AKRALDQALESDSRDSTANMMMGVLLQQEGsklNLEKADAYFKRAIAADPKNAQARNNYGTYLYQVERYNDAIEQLSIAg 138
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLG---RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA- 77
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2013110297 139 atLGYD-QRFRALENVGRIYLKLGDIENAEKSFKQALQAN 177
Cdd:COG4235 78 --LALDpDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
92-181 |
7.12e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.09 E-value: 7.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 92 NLEKADAYFKRAIAADPKNAQARNNYGTYLYQVERYNDAIEqlsIAGATLGYDQRFRALENVGRIYLKLGDIENAEKSFK 171
Cdd:COG3063 7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA---LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLE 83
|
90
....*....|
gi 2013110297 172 QALQANRDSY 181
Cdd:COG3063 84 RALELDPSAL 93
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
21-207 |
2.27e-08 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 53.38 E-value: 2.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 21 AAACQTTAPTLGQKDPEKAVQVRTQLAAEYLKNGDLDSAKRALDQALESDSRDsTANMMMGVLLQQEGSKL----NLEKA 96
Cdd:COG4785 14 LAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRA-LALPDLAQLYYERGVAYdslgDYDLA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 97 DAYFKRAIAADPKNAQARNNYGTYLYQVERYNDAIEQLSIAGATLgyDQRFRALENVGRIYLKLGDIENAEKSFKQALQA 176
Cdd:COG4785 93 IADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELD--PDYAYAYLNRGIALYYLGRYELAIADLEKALEL 170
|
170 180 190
....*....|....*....|....*....|.
gi 2013110297 177 NRDSYVSMLELSeILYLRQQFAPARQLYEQF 207
Cdd:COG4785 171 DPNDPERALWLY-LAERKLDPEKALALLLED 200
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
50-137 |
4.18e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.78 E-value: 4.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 50 YLKNGDLDSAKRALDQALESDSRDSTANMMMGVLLQQEGsklNLEKADAyFKRAIAADPKNAQARNNYGTYLYQVERYND 129
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQG---RYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDE 77
|
....*...
gi 2013110297 130 AIEQLSIA 137
Cdd:COG3063 78 ALAYLERA 85
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
45-175 |
4.59e-08 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 52.22 E-value: 4.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 45 QLAAEYLKNGDLDSAKRALDQALESDSRDSTANMMMGVLLQQEGsklNLEKADAYFKRAIAADPKNAQARNNYGTYLYQV 124
Cdd:COG4785 78 ERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLG---DYDAALEDFDRALELDPDYAYAYLNRGIALYYL 154
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2013110297 125 ERYNDAIEQLS-----------------IAGATLGYDQ-RFRALENVGRIYLKLGDIENAEKSFKQALQ 175
Cdd:COG4785 155 GRYELAIADLEkaleldpndperalwlyLAERKLDPEKaLALLLEDWATAYLLQGDTEEARELFKLALA 223
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
104-206 |
1.89e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.78 E-value: 1.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 104 IAADPKNAQARNNYGTYLYQVERYNDAIEQLSIAgatLGYDQRF-RALENVGRIYLKLGDIENAEKSFKQALQANRDSYV 182
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKA---LELDPDDaEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE 77
|
90 100
....*....|....*....|....
gi 2013110297 183 SMLELSEILYLRQQFAPARQLYEQ 206
Cdd:COG0457 78 ALNNLGLALQALGRYEEALEDYDK 101
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
31-234 |
5.26e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 50.47 E-value: 5.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 31 LGQKDPEKAVQVRTQLAAEYLKNGDLDSAKRALDQALESDSRDSTANMMMGVLLQQEGsklNLEKADAYFKRAIAADPKN 110
Cdd:TIGR02917 150 QALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLG---NIELALAAYRKAIALRPNN 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 111 AQARNNYGTYLYQVERYNDAIEQLSIAGATlgYDQRFRALENVGRIYLKLGDIENAEKSFKQALQANRDSYVSMLELSEI 190
Cdd:TIGR02917 227 IAVLLALATILIEAGEFEEAEKHADALLKK--APNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGAS 304
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2013110297 191 LYLRQQFAPARQLYEQFVRAVgQKNQGARALWIGIRLARANGDQ 234
Cdd:TIGR02917 305 EYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDE 347
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
46-233 |
8.64e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 49.70 E-value: 8.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 46 LAAEYLKNGDLDSAKRALDQALESDSRDSTANMMMGVLLQQEGsklNLEKADAYFKRAIAADPKNAQARNNY-GTYLYQ- 123
Cdd:TIGR02917 471 LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEG---NPDDAIQRFEKVLTIDPKNLRAILALaGLYLRTg 547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 124 ------------VERYNDAIE-QLSIAGATLGYDQRFRAL-----------------ENVGRIYLKLGDIENAEKSFKQA 173
Cdd:TIGR02917 548 neeeavawlekaAELNPQEIEpALALAQYYLGKGQLKKALailneaadaapdspeawLMLGRAQLAAGDLNKAVSSFKKL 627
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 174 LQANRDSYVSMLELSEILYLRQQFAPARQLYEqfvRAVGQKNQGARALWIGIRLARANGD 233
Cdd:TIGR02917 628 LALQPDSALALLLLADAYAVMKNYAKAITSLK---RALELKPDNTEAQIGLAQLLLAAKR 684
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
93-268 |
1.09e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 49.61 E-value: 1.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 93 LEKADAYFKRAIAADPKNAQARNNYGTYLYQVERYNDAIEQLSIAgatLGYD-QRFRALENVGRIYLKLGDIENAEKSFK 171
Cdd:COG3914 60 LALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRA---LALNpDNAEALFNLGNLLLALGRLEEALAALR 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 172 QALQANRDSYVSMLELSEILYLRQQFAPARQLYEqfvRAVGQKNQGARAL-WIGIRLARANGDQLGTQVLvNQLRALFPN 250
Cdd:COG3914 137 RALALNPDFAEAYLNLGEALRRLGRLEEAIAALR---RALELDPDNAEALnNLGNALQDLGRLEEAIAAY-RRALELDPD 212
|
170
....*....|....*...
gi 2013110297 251 SQEYQRYLQLQYSTEAVW 268
Cdd:COG3914 213 NADAHSNLLFALRQACDW 230
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
11-206 |
1.39e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 49.31 E-value: 1.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 11 ITTVCISAIFAAACqttaptlGQKDPEKAVQVrtqlAAEYLKNGDLDSAKRALDQALESDSRDSTANMMMGVLLQQEGSK 90
Cdd:TIGR02917 4 ITALLCIALALSAC-------GDQSPEELIEA----AKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDY 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 91 LNLEKAdayFKRAIAADPKNAQARNNYGTYLYQVERYNDAIEQLSiAGATLGYDQRFRALENVGRIYLKLGDIENAEKSF 170
Cdd:TIGR02917 73 AAAEKE---LRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELP-GKTLLDDEGAAELLALRGLAYLGLGQLELAQKSY 148
|
170 180 190
....*....|....*....|....*....|....*.
gi 2013110297 171 KQALQANRDSYVSMLELSEILYLRQQFAPARQLYEQ 206
Cdd:TIGR02917 149 EQALAIDPRSLYAKLGLAQLALAENRFDEARALIDE 184
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
35-209 |
1.59e-06 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 48.93 E-value: 1.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 35 DPekAVQVRTQ-LAAeyLKNGDLDSAKRALDQALESDSRDSTANMMMGVLLQQEGSKlnlEKADAYFKRAIAADPKnaqa 113
Cdd:PRK11447 267 DP--AFRARAQgLAA--VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDR---ARAVAQFEKALALDPH---- 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 114 RNNYGTY--LYQVERYNDAIEQlsiagatlgydqrfralenvGRIYLKLGDIENAEKSFKQALQA-NRDSYvSMLELSEI 190
Cdd:PRK11447 336 SSNRDKWesLLKVNRYWLLIQQ--------------------GDAALKANNLAQAERLYQQARQVdNTDSY-AVLGLGDV 394
|
170
....*....|....*....
gi 2013110297 191 LYLRQQFAPARQLYEQFVR 209
Cdd:PRK11447 395 AMARKDYAAAERYYQQALR 413
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
95-209 |
2.11e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.15 E-value: 2.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 95 KADAYFKRAIAADPKNAQARNNYGTYLYQVERYNDAIEQLSIAGATLGYDQRFRAleNVGRIYLKLGDIENAEKSFKQAL 174
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALL--DLAEALLAAGDTEEAEELLERAL 78
|
90 100 110
....*....|....*....|....*....|....*
gi 2013110297 175 QANRDSYVSMLELSEILYLRQQFAPARQLYEQFVR 209
Cdd:COG4235 79 ALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLA 113
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
50-137 |
2.78e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.11 E-value: 2.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 50 YLKNGDLDSAKRALDQALESDSRDSTANMMMGVLLQQEGsklNLEKADAYFKRAIAADPKNAQARNNYGTYLYQVERYND 129
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSG---DKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDE 140
|
....*...
gi 2013110297 130 AIEQLSIA 137
Cdd:COG5010 141 AKAALQRA 148
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
92-177 |
5.44e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.34 E-value: 5.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 92 NLEKADAYFKRAIAADPKNAQARNNYGTYLYQVERYNDAIEQLSIAGATLGYDQRfrALENVGRIYLKLGDIENAEKSFK 171
Cdd:COG5010 69 DFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN--AYSNLAALLLSLGQDDEAKAALQ 146
|
....*.
gi 2013110297 172 QALQAN 177
Cdd:COG5010 147 RALGTS 152
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
45-108 |
3.21e-05 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 44.80 E-value: 3.21e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2013110297 45 QLAAEYLKNGDLDSAKRALDQALESDSRDSTANMMMGVLLQQEGsklNLEKADAYFKRAIAADP 108
Cdd:PRK11788 185 ELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQG---DYAAAIEALERVEEQDP 245
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
111-210 |
3.35e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 42.87 E-value: 3.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 111 AQARNNYGTYLYQVERYNDAIEQLSIAGATlgYDQRFRALENVGRIYLKLGDIENAEKSFKQALQANRDSYVSMLELSEI 190
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALEL--DPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100
....*....|....*....|
gi 2013110297 191 LYLRQQFAPARQLYEQFVRA 210
Cdd:COG4783 82 LLKAGDYDEALALLEKALKL 101
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
148-255 |
4.70e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.30 E-value: 4.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 148 RALENVGRIYLKLGDIENAEKSFKQALQANRDSYVSMLELSEILYLRQQFAPARQLYEqfvRAVGQKNQGARALWIGIRL 227
Cdd:COG4235 18 EGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLE---RALALDPDNPEALYLLGLA 94
|
90 100
....*....|....*....|....*...
gi 2013110297 228 ARANGDQLGTQVLVNQLRALFPNSQEYQ 255
Cdd:COG4235 95 AFQQGDYAEAIAAWQKLLALLPADAPAR 122
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
101-234 |
5.26e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 43.37 E-value: 5.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 101 KRAIAADPKNAQARNNYGTYLYQVERYNDAIEQLSIAgatLGYDQRF-RALENVGRIYLKLGDIENAEKSFKQALQANRD 179
Cdd:COG4785 63 IDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQA---LELDPDLaEAYNNRGLAYLLLGDYDAALEDFDRALELDPD 139
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2013110297 180 SYVSMLELSEILYLRQQFAPARQLYEQFVRAvgQKNQGARALWIGIRLARANGDQ 234
Cdd:COG4785 140 YAYAYLNRGIALYYLGRYELAIADLEKALEL--DPNDPERALWLYLAERKLDPEK 192
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
59-206 |
1.03e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.87 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 59 AKRALDQALESDSRDSTANMMMGVLLQQEGSKLNLEKADAYFKRAIAADPKNAQARNNYGTYLYQVERYNDAIEQLSIAG 138
Cdd:COG5010 2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2013110297 139 ATLGYDqrFRALENVGRIYLKLGDIENAEKSFKQALQANRDSYVSMLELSEILYLRQQFAPARQLYEQ 206
Cdd:COG5010 82 QLDPNN--PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
40-206 |
2.13e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 41.79 E-value: 2.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 40 VQVRTQLAAEYLKNGDLDSAKRALDQALESDSRDSTAnMMMGVLLQQEGSKlNLEKADAYFKRAIAADPKNAQARnnyGT 119
Cdd:COG4700 89 VQNRVRLADALLELGRYDEAIELYEEALTGIFADDPH-ILLGLAQALFELG-RYAEALETLEKLIAKNPDFKSSD---AH 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 120 YLYqveryndaieqlsiagatlgydqrfralenvGRIYLKLGDIENAEKSFKQALQANRDsYVSMLELSEILYLRQQFAP 199
Cdd:COG4700 164 LLY-------------------------------ARALEALGDLEAAEAELEALARRYSG-PEARYRYAKFLARQGRTAE 211
|
....*..
gi 2013110297 200 ARQLYEQ 206
Cdd:COG4700 212 AKELLEE 218
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
45-122 |
4.55e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 41.07 E-value: 4.55e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2013110297 45 QLAAEYLKNGDLDSAKRALDQALESDSRDSTANMMMGVLLQQEGsklNLEKADAYFKRAIAADPKnaqarNNYGTYLY 122
Cdd:cd24142 5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELG---DVEEAREVLLRAIELDPD-----GGYEKYLY 74
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
111-179 |
4.97e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 37.75 E-value: 4.97e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2013110297 111 AQARNNYGTYLYQVERYNDAIE----QLSIAGATLGYD--QRFRALENVGRIYLKLGDIENAEKSFKQALQANRD 179
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALEllekALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
148-179 |
9.54e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 35.84 E-value: 9.54e-04
10 20 30
....*....|....*....|....*....|..
gi 2013110297 148 RALENVGRIYLKLGDIENAEKSFKQALQANRD 179
Cdd:pfam13181 2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
127-221 |
1.50e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 39.68 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 127 YNDAIEQLSIAGATLGYDQRFRALenVGRIYLKLGDIENAEKSFKQALQANRDSYVSMLELSEILYLRQQFapaRQLYEQ 206
Cdd:TIGR02917 38 YKAAIIQLKNALQKDPNDAEARFL--LGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKF---QQVLDE 112
|
90
....*....|....*
gi 2013110297 207 FVRAVGQKNQGARAL 221
Cdd:TIGR02917 113 LPGKTLLDDEGAAEL 127
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
121-209 |
1.67e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.28 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 121 LYQVERYNDAIEQL-SIAGATLGYDQRFRALENVGRIYLKLGDIENAEKSFKQALQANRDSYV---SMLELSEILYLRQQ 196
Cdd:COG1729 3 LLKAGDYDEAIAAFkAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGD 82
|
90
....*....|...
gi 2013110297 197 FAPARQLYEQFVR 209
Cdd:COG1729 83 YDKARATLEELIK 95
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
145-206 |
1.89e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.21 E-value: 1.89e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 145 QRFRALENVGRIYLKLGDIENAEKSFKQALQANRDSY--------VSMLELSEILYLRQQFAPARQLYEQ 206
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLgpdhpltaTTLLNLGRLYLELGRYEEALELLER 70
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
33-112 |
2.77e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 36.30 E-value: 2.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 33 QKDPEKAvQVRTQLAAEYLKNGDLDSAkRALDQALESDSRDSTANMMMGVLLQQEGsklNLEKADAYFKRAIAADPKNAQ 112
Cdd:COG3063 20 ELDPDNA-DALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELG---DYDEALAYLERALELDPSALR 94
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
147-179 |
3.91e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 34.34 E-value: 3.91e-03
10 20 30
....*....|....*....|....*....|...
gi 2013110297 147 FRALENVGRIYLKLGDIENAEKSFKQALQANRD 179
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
156-253 |
4.25e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 35.92 E-value: 4.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 156 IYLKLGDIENAEKSFKQALQANRDSYVSMLELSEILYLRQQFAPArqlyEQFVRAVGQKNQGARALWIGIRLARANGDQL 235
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA----IALEKALKLDPNNAEALLNLAELLLELGDYD 76
|
90
....*....|....*...
gi 2013110297 236 GTQVLVNQLRALFPNSQE 253
Cdd:COG3063 77 EALAYLERALELDPSALR 94
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
35-247 |
4.40e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 38.30 E-value: 4.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 35 DPEKAVQVRTQLAAEYLKNGDLDSAKRALDQALESDSRDSTANMMMGVLLQQEGSKL---NLEKADAYFKRAIAAD---- 107
Cdd:COG3899 700 ERDRAARLLLRAARRALARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYlagRFEEAEALLERALAARalaa 779
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 108 ---------PKNAQARNNYGtyLYQVERYNDAIEQ----LSIAGATLGYDQRFRALENVGRIYLKLGDIENAEKSFKQAL 174
Cdd:COG3899 780 laalrhgnpPASARAYANLG--LLLLGDYEEAYEFgelaLALAERLGDRRLEARALFNLGFILHWLGPLREALELLREAL 857
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2013110297 175 QANRDSYVSMLELsEILYLRQQFAPARQLYEQFVRAVGQKNQGARALWIGIRLARANGDQLGTQVLVNQLRAL 247
Cdd:COG3899 858 EAGLETGDAALAL-LALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAA 929
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
155-256 |
4.43e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.12 E-value: 4.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 155 RIYLKLGDIENAEKSFKQALQANRDSYV---SMLELSEILYLRQQFAPARQLYEQFVRAVGQKNQGARALWIGIRLARAN 231
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLEL 80
|
90 100
....*....|....*....|....*
gi 2013110297 232 GDQLGTQVLVNQLRALFPNSQEYQR 256
Cdd:COG1729 81 GDYDKARATLEELIKKYPDSEAAKE 105
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
85-206 |
4.94e-03 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 37.87 E-value: 4.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 85 QQEGSKLNLEKADAYFKRAIAADPKNAQARNNYGTYLYQVERYNDAIEQL-SIAgatlgyDQR----FRALENVGRIYLK 159
Cdd:PRK11788 188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALeRVE------EQDpeylSEVLPKLMECYQA 261
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 2013110297 160 LGDIENAEKSFKQALQANRDSYVsMLELSEILYLRQQFAPARQLYEQ 206
Cdd:PRK11788 262 LGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLRE 307
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
96-209 |
5.66e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 36.48 E-value: 5.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013110297 96 ADAYFKRAIAADPKNAQARNNYGTYLYQVERYNDAIEQLSIAGATLGYDQRFRALENVGRIYLKLGDIENAEKSFKQALQ 175
Cdd:COG5010 3 ALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ 82
|
90 100 110
....*....|....*....|....*....|....
gi 2013110297 176 ANRDSYVSMLELSEILYLRQQFAPARQLYEQFVR 209
Cdd:COG5010 83 LDPNNPELYYNLALLYSRSGDKDEAKEYYEKALA 116
|
|
| |
