|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
8-453 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 655.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 8 WNLIKFSMEQDLSKITFQTFVEPAKPLQLDKAQMTIEVPTQLHRDYWEKNLAAKFTDIAMQATNEQIRPVMITEEERQQL 87
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLLSIEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAEIEIEFTVGEDEEEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 88 TRDKDSQVTTGNVAGQQPTTAttptfmreTKLNPKYTFDTFVIGKGNQMAHAAALVVSEEPGTMYNPLFFYGGVGLGKTH 167
Cdd:TIGR00362 81 EPNSKKPEPAPPEAPAPPSSA--------SGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTH 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 168 LMHAIGNKLLETDPTSNIKYVTSESFTNELINAIQTKKQEAFREEYRNVDLLLVDDIQFFANKEATQEEFFHTFNALYED 247
Cdd:TIGR00362 153 LLHAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHEN 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 248 DKQIVLTSDRLPNEIPQLQDRLVSRFKWGLSVDITPPDLETRIAILRNKADLEGIEIPDDTLSYIAGQIDSNVRELEGAL 327
Cdd:TIGR00362 233 NKQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEGAL 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 328 ARVQAYSRLNNSPITTSLVADALKSLhLSSKLSEVSIPVIQEKVAKYFHVTMADLKGKKRNKQIVIPRQIAMYLSRELTE 407
Cdd:TIGR00362 313 NRLLAYASLTGKPITLELAKEALKDL-LRAQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTD 391
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 2022145540 408 SSLPRIGNEFGGKDHTTVIHAHDKITKALKTDAELQKAVGDLTGQL 453
Cdd:TIGR00362 392 LSLPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
5-455 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 642.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 5 NDLWNLIKFSMEQDLSKITFQTFVEPAKPLQLDKAQMTIEVPTQLHRDYWEKNLAAKFTDIAmqatneqirpvmiteeer 84
Cdd:PRK00149 3 QSLWEKVLERLKDELSEQEYETWIKPLKALSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEAL------------------ 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 85 qqltrdkdsqvttgnvagqqpttattptfmretKLNPKYTFDTFVIGKGNQMAHAAALVVSEEPGTMYNPLFFYGGVGLG 164
Cdd:PRK00149 65 ---------------------------------QLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLG 111
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 165 KTHLMHAIGNKLLETDPTSNIKYVTSESFTNELINAIQTKKQEAFREEYRNVDLLLVDDIQFFANKEATQEEFFHTFNAL 244
Cdd:PRK00149 112 KTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNAL 191
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 245 YEDDKQIVLTSDRLPNEIPQLQDRLVSRFKWGLSVDITPPDLETRIAILRNKADLEGIEIPDDTLSYIAGQIDSNVRELE 324
Cdd:PRK00149 192 HEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELE 271
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 325 GALARVQAYSRLNNSPITTSLVADALKSLhLSSKLSEVSIPVIQEKVAKYFHVTMADLKGKKRNKQIVIPRQIAMYLSRE 404
Cdd:PRK00149 272 GALNRLIAYASLTGKPITLELAKEALKDL-LAAQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKE 350
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 2022145540 405 LTESSLPRIGNEFGGKDHTTVIHAHDKITKALKTDAELQKAVGDLTGQLKS 455
Cdd:PRK00149 351 LTDLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
119-422 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 521.67 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 119 LNPKYTFDTFVIGKGNQMAHAAALVVSEEPGTMYNPLFFYGGVGLGKTHLMHAIGNKLLETDPTSNIKYVTSESFTNELI 198
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 199 NAIQTKKQEAFREEYRNVDLLLVDDIQFFANKEATQEEFFHTFNALYEDDKQIVLTSDRLPNEIPQLQDRLVSRFKWGLS 278
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 279 VDITPPDLETRIAILRNKADLEGIEIPDDTLSYIAGQIDSNVRELEGALARVQAYSRLNNSPITTSLVADALKSLhLSSK 358
Cdd:COG0593 161 VDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDL-LRAQ 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2022145540 359 LSEVSIPVIQEKVAKYFHVTMADLKGKKRNKQIVIPRQIAMYLSRELTESSLPRIGNEFGGKDH 422
Cdd:COG0593 240 KKEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
119-337 |
1.54e-120 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 350.47 E-value: 1.54e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 119 LNPKYTFDTFVIGKGNQMAHAAALVVSEEPGTMYNPLFFYGGVGLGKTHLMHAIGNKLLETDPTSNIKYVTSESFTNELI 198
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 199 NAIQTKKQEAFREEYRNVDLLLVDDIQFFANKEATQEEFFHTFNALYEDDKQIVLTSDRLPNEIPQLQDRLVSRFKWGLS 278
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2022145540 279 VDITPPDLETRIAILRNKADLEGIEIPDDTLSYIAGQIDSNVRELEGALARVQAYSRLN 337
Cdd:pfam00308 161 TDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
367-453 |
6.27e-39 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 135.72 E-value: 6.27e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 367 IQEKVAKYFHVTMADLKGKKRNKQIVIPRQIAMYLSRELTESSLPRIGNEFGGKDHTTVIHAHDKITKALKTDAELQKAV 446
Cdd:cd06571 4 IIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELKEDV 83
|
....*..
gi 2022145540 447 GDLTGQL 453
Cdd:cd06571 84 EELEKKL 90
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
363-431 |
1.45e-33 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 120.69 E-value: 1.45e-33
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2022145540 363 SIPVIQEKVAKYFHVTMADLKGKKRNKQIVIPRQIAMYLSRELTESSLPRIGNEFGGKDHTTVIHAHDK 431
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
157-255 |
1.43e-04 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 43.23 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 157 FYGGVGLGKTHLMHAIGNKLLEtdptSNIK--YVTsesfTNELINAIQTKKQEA-FREEYR---NVDLLLVDDIQF--FA 228
Cdd:NF038214 95 LLGPPGTGKTHLAIALGYAACR----QGYRvrFTT----AADLVEQLAQARADGrLGRLLRrlaRYDLLIIDELGYlpFS 166
|
90 100
....*....|....*....|....*..
gi 2022145540 229 NKEAtqEEFFHTFNALYEdDKQIVLTS 255
Cdd:NF038214 167 REGA--NLLFELIADRYE-RGSTIITS 190
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
8-453 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 655.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 8 WNLIKFSMEQDLSKITFQTFVEPAKPLQLDKAQMTIEVPTQLHRDYWEKNLAAKFTDIAMQATNEQIRPVMITEEERQQL 87
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLLSIEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAEIEIEFTVGEDEEEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 88 TRDKDSQVTTGNVAGQQPTTAttptfmreTKLNPKYTFDTFVIGKGNQMAHAAALVVSEEPGTMYNPLFFYGGVGLGKTH 167
Cdd:TIGR00362 81 EPNSKKPEPAPPEAPAPPSSA--------SGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTH 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 168 LMHAIGNKLLETDPTSNIKYVTSESFTNELINAIQTKKQEAFREEYRNVDLLLVDDIQFFANKEATQEEFFHTFNALYED 247
Cdd:TIGR00362 153 LLHAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHEN 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 248 DKQIVLTSDRLPNEIPQLQDRLVSRFKWGLSVDITPPDLETRIAILRNKADLEGIEIPDDTLSYIAGQIDSNVRELEGAL 327
Cdd:TIGR00362 233 NKQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEGAL 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 328 ARVQAYSRLNNSPITTSLVADALKSLhLSSKLSEVSIPVIQEKVAKYFHVTMADLKGKKRNKQIVIPRQIAMYLSRELTE 407
Cdd:TIGR00362 313 NRLLAYASLTGKPITLELAKEALKDL-LRAQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTD 391
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 2022145540 408 SSLPRIGNEFGGKDHTTVIHAHDKITKALKTDAELQKAVGDLTGQL 453
Cdd:TIGR00362 392 LSLPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
5-455 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 642.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 5 NDLWNLIKFSMEQDLSKITFQTFVEPAKPLQLDKAQMTIEVPTQLHRDYWEKNLAAKFTDIAmqatneqirpvmiteeer 84
Cdd:PRK00149 3 QSLWEKVLERLKDELSEQEYETWIKPLKALSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEAL------------------ 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 85 qqltrdkdsqvttgnvagqqpttattptfmretKLNPKYTFDTFVIGKGNQMAHAAALVVSEEPGTMYNPLFFYGGVGLG 164
Cdd:PRK00149 65 ---------------------------------QLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLG 111
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 165 KTHLMHAIGNKLLETDPTSNIKYVTSESFTNELINAIQTKKQEAFREEYRNVDLLLVDDIQFFANKEATQEEFFHTFNAL 244
Cdd:PRK00149 112 KTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNAL 191
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 245 YEDDKQIVLTSDRLPNEIPQLQDRLVSRFKWGLSVDITPPDLETRIAILRNKADLEGIEIPDDTLSYIAGQIDSNVRELE 324
Cdd:PRK00149 192 HEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELE 271
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 325 GALARVQAYSRLNNSPITTSLVADALKSLhLSSKLSEVSIPVIQEKVAKYFHVTMADLKGKKRNKQIVIPRQIAMYLSRE 404
Cdd:PRK00149 272 GALNRLIAYASLTGKPITLELAKEALKDL-LAAQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKE 350
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 2022145540 405 LTESSLPRIGNEFGGKDHTTVIHAHDKITKALKTDAELQKAVGDLTGQLKS 455
Cdd:PRK00149 351 LTDLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
119-422 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 521.67 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 119 LNPKYTFDTFVIGKGNQMAHAAALVVSEEPGTMYNPLFFYGGVGLGKTHLMHAIGNKLLETDPTSNIKYVTSESFTNELI 198
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 199 NAIQTKKQEAFREEYRNVDLLLVDDIQFFANKEATQEEFFHTFNALYEDDKQIVLTSDRLPNEIPQLQDRLVSRFKWGLS 278
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 279 VDITPPDLETRIAILRNKADLEGIEIPDDTLSYIAGQIDSNVRELEGALARVQAYSRLNNSPITTSLVADALKSLhLSSK 358
Cdd:COG0593 161 VDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDL-LRAQ 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2022145540 359 LSEVSIPVIQEKVAKYFHVTMADLKGKKRNKQIVIPRQIAMYLSRELTESSLPRIGNEFGGKDH 422
Cdd:COG0593 240 KKEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
118-454 |
4.95e-145 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 427.70 E-value: 4.95e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 118 KLNPKYTFDTFVIGKGNQMAHAAALVVSEEPGTMYNPLFFYGGVGLGKTHLMHAIGNKLLETDPTSNIKYVTSESFTNEL 197
Cdd:PRK14086 280 RLNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 198 INAIQTKKQEAFREEYRNVDLLLVDDIQFFANKEATQEEFFHTFNALYEDDKQIVLTSDRLPNEIPQLQDRLVSRFKWGL 277
Cdd:PRK14086 360 INSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGL 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 278 SVDITPPDLETRIAILRNKADLEGIEIPDDTLSYIAGQIDSNVRELEGALARVQAYSRLNNSPITTSLVADALKSLHLSS 357
Cdd:PRK14086 440 ITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDLIPED 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 358 KLSEVSIPVIQEKVAKYFHVTMADLKGKKRNKQIVIPRQIAMYLSRELTESSLPRIGNEFgGKDHTTVIHAHDKITKALK 437
Cdd:PRK14086 520 SAPEITAAAIMAATADYFGLTVEDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQQF-GRDHTTVMHADRKIRALMA 598
|
330
....*....|....*..
gi 2022145540 438 TDAELQKAVGDLTGQLK 454
Cdd:PRK14086 599 ERRSIYNQVTELTNRIK 615
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
119-337 |
1.54e-120 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 350.47 E-value: 1.54e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 119 LNPKYTFDTFVIGKGNQMAHAAALVVSEEPGTMYNPLFFYGGVGLGKTHLMHAIGNKLLETDPTSNIKYVTSESFTNELI 198
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 199 NAIQTKKQEAFREEYRNVDLLLVDDIQFFANKEATQEEFFHTFNALYEDDKQIVLTSDRLPNEIPQLQDRLVSRFKWGLS 278
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2022145540 279 VDITPPDLETRIAILRNKADLEGIEIPDDTLSYIAGQIDSNVRELEGALARVQAYSRLN 337
Cdd:pfam00308 161 TDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| PRK12422 |
PRK12422 |
chromosomal replication initiator protein DnaA; |
114-455 |
3.25e-71 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 183521 [Multi-domain] Cd Length: 445 Bit Score: 232.03 E-value: 3.25e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 114 MRETKLNPKYTFDTFVIGKGNQMAHAAALVVSEEP----GTMYNPLFFYGGVGLGKTHLMHAIGNKLLETDptSNIKYVT 189
Cdd:PRK12422 99 MKYGELDPLMTFANFLVTPENDLPHRILQEFTKVSeqgkGFPFNPIYLFGPEGSGKTHLMQAAVHALRESG--GKILYVR 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 190 SESFTNELINAIQTKKQEAFREEYRNVDLLLVDDIQFFANKEATQEEFFHTFNALYEDDKQIVLTSDRLPNEIPQLQDRL 269
Cdd:PRK12422 177 SELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERL 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 270 VSRFKWGLSVDITPPDLETRIAILRNKADLEGIEIPDDTLSYIAGQIDSNVRELEGA---LARVQAYSRLNNSPITTSLV 346
Cdd:PRK12422 257 ISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHAltlLAKRVAYKKLSHQLLYVDDI 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 347 ADALKSLHLSSKLSEVSIPVIQEKVAKYFHVTMADLKGKKRNKQIVIPRQIAMYLSRELTESSLPRIGNEFgGKDHTTVI 426
Cdd:PRK12422 337 KALLHDVLEAAESVRLTPSKIIRAVAQYYGVSPESILGRSQSREYVLPRQVAMYLCRQKLSLSYVKIGDVF-SRDHSTVI 415
|
330 340 350
....*....|....*....|....*....|
gi 2022145540 427 HAHDKITKALKTDA-ELQKAVGDLTGQLKS 455
Cdd:PRK12422 416 SSIRAISQKLEEDDrDISMAIQEITKRLSS 445
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
367-453 |
6.27e-39 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 135.72 E-value: 6.27e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 367 IQEKVAKYFHVTMADLKGKKRNKQIVIPRQIAMYLSRELTESSLPRIGNEFGGKDHTTVIHAHDKITKALKTDAELQKAV 446
Cdd:cd06571 4 IIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELKEDV 83
|
....*..
gi 2022145540 447 GDLTGQL 453
Cdd:cd06571 84 EELEKKL 90
|
|
| Bac_DnaA_C |
pfam08299 |
Bacterial dnaA protein helix-turn-helix; |
367-432 |
3.88e-37 |
|
Bacterial dnaA protein helix-turn-helix;
Pssm-ID: 462419 [Multi-domain] Cd Length: 69 Bit Score: 130.21 E-value: 3.88e-37
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2022145540 367 IQEKVAKYFHVTMADLKGKKRNKQIVIPRQIAMYLSRELTESSLPRIGNEFGGKDHTTVIHAHDKI 432
Cdd:pfam08299 4 IIEAVAEYFGISPEDLKSKSRKREIALARQIAMYLARELTDLSLPEIGRAFGGRDHSTVIHACKKI 69
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
363-431 |
1.45e-33 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 120.69 E-value: 1.45e-33
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2022145540 363 SIPVIQEKVAKYFHVTMADLKGKKRNKQIVIPRQIAMYLSRELTESSLPRIGNEFGGKDHTTVIHAHDK 431
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| DnaA_homol_Hda |
TIGR03420 |
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). ... |
124-351 |
1.13e-25 |
|
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274571 [Multi-domain] Cd Length: 226 Bit Score: 104.19 E-value: 1.13e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 124 TFDTFVIGkGNQ--MAHAAALVVSEEPgtmyNPLFFYGGVGLGKTHLMHAIGNKLLETDptSNIKYVTSESFTNELINAI 201
Cdd:TIGR03420 13 TFDNFYAG-GNAelLAALRQLAAGKGD----RFLYLWGESGSGKSHLLQAACAAAEERG--KSAIYLPLAELAQADPEVL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 202 QTkkQEAFreeyrnvDLLLVDDIQFFANKEATQEEFFHTFNALYEDDKQIVLTSDRLPNEIP-QLQDrLVSRFKWGLSVD 280
Cdd:TIGR03420 86 EG--LEQA-------DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPlRLPD-LRTRLAWGLVFQ 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2022145540 281 ITPPDLETRIAILRNKADLEGIEIPDDTLSYIAGQIDSNVRELEGALARVQAYSRLNNSPITTSLVADALK 351
Cdd:TIGR03420 156 LPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEVLA 226
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
132-277 |
2.75e-18 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 81.42 E-value: 2.75e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 132 KGNQMAHAAALVVSEEPGtmYNPLFFYGGVGLGKTHLMHAIGNKLLETDPtsNIKYVTSESFTNELINAIQ----TKKQE 207
Cdd:cd00009 1 VGQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIANELFRPGA--PFLYLNASDLLEGLVVAELfghfLVRLL 76
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2022145540 208 AFREEYRNVDLLLVDDIQFFAN-KEATQEEFFHTFN---ALYEDDKQIVLTSDRLPN-EIPQLQDRLVSRFKWGL 277
Cdd:cd00009 77 FELAEKAKPGVLFIDEIDSLSRgAQNALLRVLETLNdlrIDRENVRVIGATNRPLLGdLDRALYDRLDIRIVIPL 151
|
|
| PRK08084 |
PRK08084 |
DnaA inactivator Hda; |
124-351 |
2.39e-15 |
|
DnaA inactivator Hda;
Pssm-ID: 181224 [Multi-domain] Cd Length: 235 Bit Score: 75.10 E-value: 2.39e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 124 TFDTFVIGKGNQMAHAAALVVSEEPGTMynpLFFYGGVGLGKTHLMHAIGNKLLETDPTSNikYV---TSESFTNELINA 200
Cdd:PRK08084 20 TFASFYPGDNDSLLAALQNALRQEHSGY---IYLWSREGAGRSHLLHAACAELSQRGRAVG--YVpldKRAWFVPEVLEG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 201 IQtkkqeafreeyrNVDLLLVDDIQFFANKEATQEEFFHTFNALYEDDK-QIVLTSDRLPNEIPQLQDRLVSRFKWGLSV 279
Cdd:PRK08084 95 ME------------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRtRLLITGDRPPRQLNLGLPDLASRLDWGQIY 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2022145540 280 DITPPDLETRIAILRNKADLEGIEIPDDTLSYIAGQIDSNVRELEGALARVQAYSRLNNSPITTSLVADALK 351
Cdd:PRK08084 163 KLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 234
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
122-272 |
1.19e-13 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 70.82 E-value: 1.19e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 122 KYTFDTFVIGKGNQMAHAAALVVSEEPGTMYN---PLFFYGGVGLGKTHLMHAIGNKLLEtdptsniKYVTSeSFTN--E 196
Cdd:PRK08116 81 NSTFENFLFDKGSEKAYKIARKYVKKFEEMKKenvGLLLWGSVGTGKTYLAACIANELIE-------KGVPV-IFVNfpQ 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 197 LINAIQTKKQEAFREEY-------RNVDLLLVDDIQFFANKEATQEEFFHTFNALYEDDKQIVLTSDRLPNEIP-QLQDR 268
Cdd:PRK08116 153 LLNRIKSTYKSSGKEDEneiirslVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKnQYGKR 232
|
....
gi 2022145540 269 LVSR 272
Cdd:PRK08116 233 IYDR 236
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
155-255 |
1.40e-11 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 64.42 E-value: 1.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 155 LFFYGGVGLGKTHLMHAIGNKLLETDPTSniKYVTSESFTNELINAIQTKKQEAFREEYRNVDLLLVDDIQFFANKEATQ 234
Cdd:COG1484 102 LILLGPPGTGKTHLAIALGHEACRAGYRV--RFTTAPDLVNELKEARADGRLERLLKRLAKVDLLILDELGYLPLDAEGA 179
|
90 100
....*....|....*....|.
gi 2022145540 235 EEFFHTFNALYEdDKQIVLTS 255
Cdd:COG1484 180 ELLFELISDRYE-RRSTIITS 199
|
|
| PRK08903 |
PRK08903 |
DnaA regulatory inactivator Hda; Validated |
124-354 |
1.31e-10 |
|
DnaA regulatory inactivator Hda; Validated
Pssm-ID: 236347 [Multi-domain] Cd Length: 227 Bit Score: 61.15 E-value: 1.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 124 TFDTFVIGkGNQMAHAA--ALVVSEEPGTmynplFFY--GGVGLGKTHLMHAIGNKLLETDptSNIKYvtsesftnelIN 199
Cdd:PRK08903 16 TFDNFVAG-ENAELVARlrELAAGPVADR-----FFYlwGEAGSGRSHLLQALVADASYGG--RNARY----------LD 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 200 AIQTKKQEAFREEyrnVDLLLVDDIQffANKEATQEEFFHTFNALYEDDKQIVLTS-DRLPNEIPqLQDRLVSRFKWGLS 278
Cdd:PRK08903 78 AASPLLAFDFDPE---AELYAVDDVE--RLDDAQQIALFNLFNRVRAHGQGALLVAgPAAPLALP-LREDLRTRLGWGLV 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2022145540 279 VDITPPDLETRIAILRNKADLEGIEIPDDTLSYIAGQIDSNVRELEGALARVQAYSRLNNSPITTSLVADALKSLH 354
Cdd:PRK08903 152 YELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLLREMLAQPE 227
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
155-274 |
1.74e-08 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 56.06 E-value: 1.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 155 LFFYGGVGLGKTHLMHAIGNKLLETDPTsnIKYVTSESFTnELINAIQTKKQEAFREEY---RNVDLLLVDDIQFFANKE 231
Cdd:PRK06835 186 LLFYGNTGTGKTFLSNCIAKELLDRGKS--VIYRTADELI-EILREIRFNNDKELEEVYdllINCDLLIIDDLGTEKITE 262
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2022145540 232 ATQEEFFHTFNALYEDDKQIVLTSDRLPNEIPQLQD-----RLVSRFK 274
Cdd:PRK06835 263 FSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSerissRLLGNFT 310
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
153-263 |
2.73e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 50.06 E-value: 2.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 153 NPLFFYGGVGLGKTHLMHAIGNKLLEtdPTSNIKYVTSESFTNELINAI-------------QTKKQEAFRE--EYRNVD 217
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGP--PGGGVIYIDGEDILEEVLDQLlliivggkkasgsGELRLRLALAlaRKLKPD 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2022145540 218 LLLVDDIQFFANKEATQEEFFH-----TFNALYEDDKQIVLTSDRLPNEIP 263
Cdd:smart00382 81 VLILDEITSLLDAEQEALLLLLeelrlLLLLKSEKNLTVILTTNDEKDLGP 131
|
|
| PRK06921 |
PRK06921 |
hypothetical protein; Provisional |
149-272 |
4.06e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 180750 [Multi-domain] Cd Length: 266 Bit Score: 48.24 E-value: 4.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 149 GTMYNPLFFYGGVGLGKTHLMHAIGNKLLETDPTSNIKYVTSESFTN--ELINAIQTKkqeafREEYRNVDLLLVDDIQF 226
Cdd:PRK06921 114 ESRKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDlkDDFDLLEAK-----LNRMKKVEVLFIDDLFK 188
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2022145540 227 FANKE--ATQ---EEFFHTFNALYEDDKQIVLTSDRLPNEIPQLQDRLVSR 272
Cdd:PRK06921 189 PVNGKprATEwqiEQMYSVLNYRYLNHKPILISSELTIDELLDIDEALGSR 239
|
|
| PRK12377 |
PRK12377 |
putative replication protein; Provisional |
119-224 |
1.32e-05 |
|
putative replication protein; Provisional
Pssm-ID: 183482 [Multi-domain] Cd Length: 248 Bit Score: 46.37 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 119 LNPKYTFDTF-VIGKGNQMAHAAALVVSEEPGTMYNPLFFYGGVGLGKTHLMHAIGNKLLETDPT------SNIKYVTSE 191
Cdd:PRK12377 67 LHRKCSFANYqVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSvivvtvPDVMSRLHE 146
|
90 100 110
....*....|....*....|....*....|...
gi 2022145540 192 SFTNelinaiqTKKQEAFREEYRNVDLLLVDDI 224
Cdd:PRK12377 147 SYDN-------GQSGEKFLQELCKVDLLVLDEI 172
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
157-255 |
1.43e-04 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 43.23 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 157 FYGGVGLGKTHLMHAIGNKLLEtdptSNIK--YVTsesfTNELINAIQTKKQEA-FREEYR---NVDLLLVDDIQF--FA 228
Cdd:NF038214 95 LLGPPGTGKTHLAIALGYAACR----QGYRvrFTT----AADLVEQLAQARADGrLGRLLRrlaRYDLLIIDELGYlpFS 166
|
90 100
....*....|....*....|....*..
gi 2022145540 229 NKEAtqEEFFHTFNALYEdDKQIVLTS 255
Cdd:NF038214 167 REGA--NLLFELIADRYE-RGSTIITS 190
|
|
| DnaA_N |
pfam11638 |
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a ... |
5-68 |
2.01e-04 |
|
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a protein involved in the initiation of bacterial chromosomal replication. The structure of this domain is known. It is also found in three copies in some proteins. The exact function of this domain is uncertain but it has been suggested to play a role in oligomerization.
Pssm-ID: 463316 [Multi-domain] Cd Length: 65 Bit Score: 39.57 E-value: 2.01e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2022145540 5 NDLWNLIKFSMEQDLSKITFQTFVEPAKPLQLDKA-QMTIEVPTQLHRDYWEKNLAAKFTDIAMQ 68
Cdd:pfam11638 1 EELWERVLERLRKEVGEQTFNTWIKPLTLVDLDDGgSLTLSVPNRFVRDWVEEHYLDRILELWQE 65
|
|
| PRK08939 |
PRK08939 |
primosomal protein DnaI; Reviewed |
155-224 |
2.05e-04 |
|
primosomal protein DnaI; Reviewed
Pssm-ID: 236353 [Multi-domain] Cd Length: 306 Bit Score: 43.32 E-value: 2.05e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 155 LFFYGGVGLGKTHLMHAIGNKLLETDPTSNIKYVTseSFTNELINAIQTKKQEAFREEYRNVDLLLVDDI 224
Cdd:PRK08939 159 LYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP--EFIRELKNSISDGSVKEKIDAVKEAPVLMLDDI 226
|
|
| PRK08181 |
PRK08181 |
transposase; Validated |
116-257 |
2.28e-04 |
|
transposase; Validated
Pssm-ID: 136670 [Multi-domain] Cd Length: 269 Bit Score: 42.99 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 116 ETKLNPKYTFDTF------VIGKGNQMAHAAALVVSEEPGTmynpLFFYGGVGLGKTHLMHAIGNKLLETDptsnikYVT 189
Cdd:PRK08181 68 EAHLPPGKTLDSFdfeavpMVSKAQVMAIAAGDSWLAKGAN----LLLFGPPGGGKSHLAAAIGLALIENG------WRV 137
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2022145540 190 SESFTNELINAIQTKKQEAFRE----EYRNVDLLLVDDIQFFANKEATQEEFFHTFNALYEdDKQIVLTSDR 257
Cdd:PRK08181 138 LFTRTTDLVQKLQVARRELQLEsaiaKLDKFDLLILDDLAYVTKDQAETSVLFELISARYE-RRSILITANQ 208
|
|
| PRK06030 |
PRK06030 |
hypothetical protein; Provisional |
371-449 |
3.04e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 180356 Cd Length: 124 Bit Score: 40.53 E-value: 3.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 371 VAKYFHVTMADLKGKKRNKQIVI-PRQIAMYLSRELTESSLPRIGNEFgGKDHTTVIHAHDKItKALKTDAELQKAVGDL 449
Cdd:PRK06030 32 LALAFGVSGAEIASPLRGRREVSrIRQIAMYVAHVSLGWPMNEVALAF-GRDRTTVGHACHTV-EDLRDDAAFDARVSVL 109
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
155-256 |
6.37e-03 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 38.20 E-value: 6.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 155 LFFYGGVGLGKTHLMHAIGNKLLETDptSNIKYVTSESFTNELINAIQTKKQEAFREEYRNVDLLLVDDIQFFANKEATQ 234
Cdd:pfam01695 95 VVLLGPPGVGKTHLAIALGVEACRAG--YSVRFTSAADLVNQLKRAHGDGKLTRKLQQLLKPDVLILDEWGYLPLDQAEA 172
|
90 100
....*....|....*....|..
gi 2022145540 235 EEFFHTFNALYEdDKQIVLTSD 256
Cdd:pfam01695 173 NLLFQVISKRYE-HRSIILTSN 193
|
|
| PRK07952 |
PRK07952 |
DNA replication protein DnaC; Validated |
124-224 |
6.73e-03 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 181180 [Multi-domain] Cd Length: 244 Bit Score: 38.21 E-value: 6.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 124 TFDTFVIGKGNQM-AHAAALVVSEEPGTMYNPLFFYGGVGLGKTHLMHAIGNKLLE----------TDPTSNIKYVTSES 192
Cdd:PRK07952 70 SFENYRVECEGQMnALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLrgksvliitvADIMSAMKDTFSNS 149
|
90 100 110
....*....|....*....|....*....|..
gi 2022145540 193 FTNElinaiqtkkqEAFREEYRNVDLLLVDDI 224
Cdd:PRK07952 150 ETSE----------EQLLNDLSNVDLLVIDEI 171
|
|
| PRK06620 |
PRK06620 |
hypothetical protein; Validated |
176-351 |
7.36e-03 |
|
hypothetical protein; Validated
Pssm-ID: 168630 Cd Length: 214 Bit Score: 37.90 E-value: 7.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 176 LLETDPTSNIKYVTSESFTNeLINAIQTKKQEAFREEYRNVDLLLVDDIQFFankeaTQEEFFHTFNALYEDDKQIVLTS 255
Cdd:PRK06620 47 LLIKGPSSSGKTYLTKIWQN-LSNAYIIKDIFFNEEILEKYNAFIIEDIENW-----QEPALLHIFNIINEKQKYLLLTS 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022145540 256 DRLPNEIpQLQDrLVSRFKWGLSVDITPPDLETrIAILRNKA-DLEGIEIPDDTLSYIAGQIDSNVRELEGALARVQAYS 334
Cdd:PRK06620 121 SDKSRNF-TLPD-LSSRIKSVLSILLNSPDDEL-IKILIFKHfSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFA 197
|
170
....*....|....*..
gi 2022145540 335 RLNNSPITTSLVADALK 351
Cdd:PRK06620 198 LISKRKITISLVKEVLN 214
|
|
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