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Conserved domains on  [gi|2022147222|gb|QTO04127|]
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YneF family protein [Lactiplantibacillus plantarum]

Protein Classification

YneF family protein( domain architecture ID 10007960)

YneF family protein similar to Lactococcus lactis UPF0154 protein YnbE

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YneF COG3763
Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];
4-73 2.72e-30

Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];


:

Pssm-ID: 442977  Cd Length: 71  Bit Score: 101.55  E-value: 2.72e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022147222  4 STGIWILIVVIGVLVGLTGGFFGARHYMQNYLKQNPPISEEMLRSMMMQMGQRPSEKKLHQMLNSMKAAS 73
Cdd:COG3763    2 STWLWILIIIVALLAGLAGGFFIARKYMKKYLKKNPPINEDMIRAMMMQMGQKPSEKKINQMMNQMKKQK 71
 
Name Accession Description Interval E-value
YneF COG3763
Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];
4-73 2.72e-30

Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];


Pssm-ID: 442977  Cd Length: 71  Bit Score: 101.55  E-value: 2.72e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022147222  4 STGIWILIVVIGVLVGLTGGFFGARHYMQNYLKQNPPISEEMLRSMMMQMGQRPSEKKLHQMLNSMKAAS 73
Cdd:COG3763    2 STWLWILIIIVALLAGLAGGFFIARKYMKKYLKKNPPINEDMIRAMMMQMGQKPSEKKINQMMNQMKKQK 71
UPF0154 pfam03672
Uncharacterized protein family (UPF0154); This family contains a set of short bacterial ...
 12-71 4.86e-26

Uncharacterized protein family (UPF0154); This family contains a set of short bacterial proteins of unknown function.


Pssm-ID: 427437  Cd Length: 60  Bit Score: 90.35  E-value: 4.86e-26
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022147222 12 VVIGVLVGLTGGFFGARHYMQNYLKQNPPISEEMLRSMMMQMGQRPSEKKLHQMLNSMKA 71
Cdd:pfam03672  1 IILALIVGLVGGFFIARKYMEKQLKENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMKK 60
PRK01844 PRK01844
YneF family protein;
9-74 2.35e-18

YneF family protein;


Pssm-ID: 100947  Cd Length: 72  Bit Score: 71.20  E-value: 2.35e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2022147222  9 ILIVVIGVLVGLTGGFFGARHYMQNYLKQNPPISEEMLRSMMMQMGQRPSEKKLHQMLNSMKAASK 74
Cdd:PRK01844   7 ILVGVVALVAGVALGFFIARKYMMNYLQKNPPINEQMLKMMMMQMGQKPSQKKINQMMSAMNKQQM 72
 
Name Accession Description Interval E-value
YneF COG3763
Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];
4-73 2.72e-30

Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];


Pssm-ID: 442977  Cd Length: 71  Bit Score: 101.55  E-value: 2.72e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022147222  4 STGIWILIVVIGVLVGLTGGFFGARHYMQNYLKQNPPISEEMLRSMMMQMGQRPSEKKLHQMLNSMKAAS 73
Cdd:COG3763    2 STWLWILIIIVALLAGLAGGFFIARKYMKKYLKKNPPINEDMIRAMMMQMGQKPSEKKINQMMNQMKKQK 71
UPF0154 pfam03672
Uncharacterized protein family (UPF0154); This family contains a set of short bacterial ...
 12-71 4.86e-26

Uncharacterized protein family (UPF0154); This family contains a set of short bacterial proteins of unknown function.


Pssm-ID: 427437  Cd Length: 60  Bit Score: 90.35  E-value: 4.86e-26
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2022147222 12 VVIGVLVGLTGGFFGARHYMQNYLKQNPPISEEMLRSMMMQMGQRPSEKKLHQMLNSMKA 71
Cdd:pfam03672  1 IILALIVGLVGGFFIARKYMEKQLKENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMKK 60
PRK01844 PRK01844
YneF family protein;
9-74 2.35e-18

YneF family protein;


Pssm-ID: 100947  Cd Length: 72  Bit Score: 71.20  E-value: 2.35e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2022147222  9 ILIVVIGVLVGLTGGFFGARHYMQNYLKQNPPISEEMLRSMMMQMGQRPSEKKLHQMLNSMKAASK 74
Cdd:PRK01844   7 ILVGVVALVAGVALGFFIARKYMMNYLQKNPPINEQMLKMMMMQMGQKPSQKKINQMMSAMNKQQM 72
PRK00523 PRK00523
hypothetical protein; Provisional
 6-72 2.46e-12

hypothetical protein; Provisional


Pssm-ID: 179056  Cd Length: 72  Bit Score: 55.87  E-value: 2.46e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2022147222  6 GIWILIVVIGVLVGltggFFGARHYMQNYLKQNPPISEEMLRSMMMQMGQRPSEKKLHQMLNSMKAA 72
Cdd:PRK00523   9 GLGIPLLIVGGIIG----YFVSKKMFKKQIRENPPITENMIRAMYMQMGRKPSESQIKQVMRSVKNA 71
Voltage_CLC pfam00654
Voltage gated chloride channel; This family of ion channels contains 10 or 12 transmembrane ...
 1-41 6.26e-03

Voltage gated chloride channel; This family of ion channels contains 10 or 12 transmembrane helices. Each protein forms a single pore. It has been shown that some members of this family form homodimers. In terms of primary structure, they are unrelated to known cation channels or other types of anion channels. Three ClC subfamilies are found in animals. ClC-1 is involved in setting and restoring the resting membrane potential of skeletal muscle, while other channels play important parts in solute concentration mechanisms in the kidney. These proteins contain two pfam00571 domains.


Pssm-ID: 425802 [Multi-domain]  Cd Length: 344  Bit Score: 33.29  E-value: 6.26e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2022147222   1 MTVSTGIWILIVVIGVLVGLTGGFF-----GARHYMQNYLKQNPPI 41
Cdd:pfam00654 155 GSLSLLELPLFILLGILCGLLGALFnrlllKVQRLFRKLLKIPPVL 200
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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