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Conserved domains on  [gi|2030133838|gb|QUI70443|]
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c-type cytochrome biogenesis protein CcmI [Pseudoalteromonas sp. M8]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11468027)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 159-293 4.50e-25

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 99.31  E-value: 4.50e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 159 AFALGLRTKLATAGDDAVAWMLLGRVAMSLSDFEMAIQAFDKALVMQPNNNNVLVNYSQALLIEGSEPsmnRAARMLSKV 238
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTE---EAEELLERA 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2030133838 239 LKNDPTNIDAISLLALIAYERQDWKESKAAFEVLLSQLTKDDPRYeMIAGRIAEI 293
Cdd:COG4235    78 LALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR-LLEASIAEA 131
cytochro_ccmI TIGR03142
cytochrome c-type biogenesis protein CcmI; This TPR repeat-containing protein is the CcmI ...
 11-123 1.40e-16

cytochrome c-type biogenesis protein CcmI; This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family [Protein fate, Protein folding and stabilization, Energy metabolism, Electron transport]


:

Pssm-ID: 274446  Cd Length: 117  Bit Score: 75.37  E-value: 1.40e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838  11 MWFLFLLLGIFAGLFVVFPFIKKeKRVTVDHDANAERIDIFHQRLEELKEELANQRIEKDSYNESVVELKRRLLNELSPE 90
Cdd:TIGR03142   2 FWIVAALLTLVALLFLLLPLLRR-RRAAATVDRDELNLAVYRDRLAELERDLAEGLLDEAEAEAARAELQRRLLADIPAA 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2030133838  91 QSLTSR---GDNRVLALTGIAFMVLVTGVFYYYTGS 123
Cdd:TIGR03142  81 ETAAARqakRSGRLAALVVVLLLPVLALGLYLKLGA 116
 
Name Accession Description Interval E-value
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 159-293 4.50e-25

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 99.31  E-value: 4.50e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 159 AFALGLRTKLATAGDDAVAWMLLGRVAMSLSDFEMAIQAFDKALVMQPNNNNVLVNYSQALLIEGSEPsmnRAARMLSKV 238
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTE---EAEELLERA 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2030133838 239 LKNDPTNIDAISLLALIAYERQDWKESKAAFEVLLSQLTKDDPRYeMIAGRIAEI 293
Cdd:COG4235    78 LALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR-LLEASIAEA 131
cytochro_ccmI TIGR03142
cytochrome c-type biogenesis protein CcmI; This TPR repeat-containing protein is the CcmI ...
 11-123 1.40e-16

cytochrome c-type biogenesis protein CcmI; This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family [Protein fate, Protein folding and stabilization, Energy metabolism, Electron transport]


Pssm-ID: 274446  Cd Length: 117  Bit Score: 75.37  E-value: 1.40e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838  11 MWFLFLLLGIFAGLFVVFPFIKKeKRVTVDHDANAERIDIFHQRLEELKEELANQRIEKDSYNESVVELKRRLLNELSPE 90
Cdd:TIGR03142   2 FWIVAALLTLVALLFLLLPLLRR-RRAAATVDRDELNLAVYRDRLAELERDLAEGLLDEAEAEAARAELQRRLLADIPAA 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2030133838  91 QSLTSR---GDNRVLALTGIAFMVLVTGVFYYYTGS 123
Cdd:TIGR03142  81 ETAAARqakRSGRLAALVVVLLLPVLALGLYLKLGA 116
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 177-339 1.54e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 57.02  E-value: 1.54e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 177 AWMLLGRVAMSLSDFEMAIQAFDKALVMQPNNNNVLVNYSQALLIEG-----------------SEPSMNRAARMLS--- 236
Cdd:TIGR02917 195 ALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGefeeaekhadallkkapNSPLAHYLKALVDfqk 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 237 -----------KVLKNDPTNIDAISLLALIAYERQDWKESKAAFEVLLSQLTKDDPryemiAGRI-AEIEQKVGQQTDEQ 304
Cdd:TIGR02917 275 knyedaretlqDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQ-----ARRLlASIQLRLGRVDEAI 349

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2030133838 305 VAVKAGI------VATVTISAE--LQNKIPTDSTlFVFAKAAE 339
Cdd:TIGR02917 350 ATLSPALgldpddPAALSLLGEayLALGDFEKAA-EYLAKATE 391
TPR_1 pfam00515
Tetratricopeptide repeat;
175-208 8.78e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 42.41  E-value: 8.78e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 2030133838 175 AVAWMLLGRVAMSLSDFEMAIQAFDKALVMQPNN 208
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 175-208 9.79e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 42.05  E-value: 9.79e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2030133838  175 AVAWMLLGRVAMSLSDFEMAIQAFDKALVMQPNN 208
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 143-315 6.27e-05

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 45.46  E-value: 6.27e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838  143 RAVMQSGEPLNA--NELQAFALgLRTKLATAGDDavawMLLGRVAMSLSDFEMAIQAFDKALVMQPNNNNVLVNYSQALL 220
Cdd:PRK11447   574 DQVLETANRLRDsgKEAEAEAL-LRQQPPSTRID----LTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDI 648

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838  221 IEGSepsmNRAAR-MLSKVLKNDPTNIDAISLLALIAYERQDWKESKAAFEVLLSQLTKDDPRYE--MIAGRIAEIEQKV 297
Cdd:PRK11447   649 AQGD----LAAARaQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMEsaLVLRDAARFEAQT 724

                          170       180
                   ....*....|....*....|...
gi 2030133838  298 GQ-----QTDEQVAVKAGIVATV 315
Cdd:PRK11447   725 GQpqqalETYKDAMVASGITPTR 747
 
Name Accession Description Interval E-value
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 159-293 4.50e-25

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 99.31  E-value: 4.50e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 159 AFALGLRTKLATAGDDAVAWMLLGRVAMSLSDFEMAIQAFDKALVMQPNNNNVLVNYSQALLIEGSEPsmnRAARMLSKV 238
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTE---EAEELLERA 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2030133838 239 LKNDPTNIDAISLLALIAYERQDWKESKAAFEVLLSQLTKDDPRYeMIAGRIAEI 293
Cdd:COG4235    78 LALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR-LLEASIAEA 131
cytochro_ccmI TIGR03142
cytochrome c-type biogenesis protein CcmI; This TPR repeat-containing protein is the CcmI ...
 11-123 1.40e-16

cytochrome c-type biogenesis protein CcmI; This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family [Protein fate, Protein folding and stabilization, Energy metabolism, Electron transport]


Pssm-ID: 274446  Cd Length: 117  Bit Score: 75.37  E-value: 1.40e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838  11 MWFLFLLLGIFAGLFVVFPFIKKeKRVTVDHDANAERIDIFHQRLEELKEELANQRIEKDSYNESVVELKRRLLNELSPE 90
Cdd:TIGR03142   2 FWIVAALLTLVALLFLLLPLLRR-RRAAATVDRDELNLAVYRDRLAELERDLAEGLLDEAEAEAARAELQRRLLADIPAA 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2030133838  91 QSLTSR---GDNRVLALTGIAFMVLVTGVFYYYTGS 123
Cdd:TIGR03142  81 ETAAARqakRSGRLAALVVVLLLPVLALGLYLKLGA 116
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 168-302 1.69e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 67.45  E-value: 1.69e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 168 LATAGDDAVAWMLLGRVAMSLSDFEMAIQAFDKALVMQPNNNNVLVNYSQALLIEGSEpsmNRAARMLSKVLKNDPTNID 247
Cdd:COG2956   103 LELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDY---DEAIEALEKALKLDPDCAR 179

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2030133838 248 AISLLALIAYERQDWKESKAAFEVLLSQltkdDPRYEMIAGRIAEIEQKVGQQTD 302
Cdd:COG2956   180 ALLLLAELYLEQGDYEEAIAALERALEQ----DPDYLPALPRLAELYEKLGDPEE 230
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 91-295 2.88e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 66.68  E-value: 2.88e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838  91 QSLTSRGDNRVLALTGIAFMVLVTGVFYyytgshRQIASWHEAVEKLPEYGE------RAVMQSGEPLNANELqafalgL 164
Cdd:COG2956    66 QKLLERDPDRAEALLELAQDYLKAGLLD------RAEELLEKLLELDPDDAEalrllaEIYEQEGDWEKAIEV------L 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 165 RTKLATAGDDAVAWMLLGRVAMSLSDFEMAIQAFDKALVMQPNNNNVLVNYSQALLIEGsepSMNRAARMLSKVLKNDPT 244
Cdd:COG2956   134 ERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQG---DYEEAIAALERALEQDPD 210

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2030133838 245 NIDAISLLALIAYERQDWKESKAAFEVLLsQLTKDDPRYEMIAGRIAEIEQ 295
Cdd:COG2956   211 YLPALPRLAELYEKLGDPEEALELLRKAL-ELDPSDDLLLALADLLERKEG 260
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 164-275 1.29e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 62.13  E-value: 1.29e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 164 LRTKLATAGDDAVAWMLLGRVAMSLSDFEMAIQAFDKALVMQPNNNNVLVNYSQALLIEGsepSMNRAARMLSKVLKNDP 243
Cdd:COG4783    27 LEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG---DYDEALALLEKALKLDP 103

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2030133838 244 TNIDAISLLALIAYERQDWKESKAAFEVLLSQ 275
Cdd:COG4783   104 EHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 174-299 1.81e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 61.36  E-value: 1.81e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 174 DAVAWMLLGRVAMSLSDFEMAIQAFDKALVMQPNNNNVLVNYSQALLIEGSepsMNRAARMLSKVLKNDPTNIDAISLLA 253
Cdd:COG4783     3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGD---LDEAIVLLHEALELDPDEPEARLNLG 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2030133838 254 LIAYERQDWKESKAAFEvllsQLTKDDPRYEMIAGRIAEIEQKVGQ 299
Cdd:COG4783    80 LALLKAGDYDEALALLE----KALKLDPEHPEAYLRLARAYRALGR 121
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 164-281 1.18e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.47  E-value: 1.18e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 164 LRTKLATAGDDAVAWMLLGRVAMSLSDFEMAIQAFDKALVMQPNNNNVLVNYSQALLiegsepSMNR---AARMLSKVLK 240
Cdd:COG3914   135 LRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQ------DLGRleeAIAAYRRALE 208

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2030133838 241 NDPTNIDAISLLALIAYERQDWKESkAAFEVLLSQLTKDDP 281
Cdd:COG3914   209 LDPDNADAHSNLLFALRQACDWEVY-DRFEELLAALARGPS 248
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
173-299 2.35e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 60.41  E-value: 2.35e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 173 DDAVAWMLLGRVAMSLSDFEMAIQAFDKALVMQPNNNNVLVNYSQALLIEGSEPsmnRAARMLSKVLKNDPTNIDAISLL 252
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYE---EALADYEQALELDPDDAEALNNL 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2030133838 253 ALIAYERQDWKESKAAFEvllsQLTKDDPRYEMIAGRIAEIEQKVGQ 299
Cdd:COG0457    83 GLALQALGRYEEALEDYD----KALELDPDDAEALYNLGLALLELGR 125
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 122-283 2.38e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 62.32  E-value: 2.38e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 122 GSHRQIASWHEAVEKLPEYGERAVMQSGEPLNANELqafalgLRTKLATAGDDAVAWMLLGRVAMSLSDFEMAIQAFDKA 201
Cdd:COG3914    65 GEAAAAAAALLLLAALLELAALLLQALGRYEEALAL------YRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRA 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 202 LVMQPNNNNVLVNYSQALLIEGsepSMNRAARMLSKVLKNDPTNIDAISLLALIAYERQDWKESKAAFEVLLsQLTKDDP 281
Cdd:COG3914   139 LALNPDFAEAYLNLGEALRRLG---RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRAL-ELDPDNA 214


                  ..
gi 2030133838 282 RY 283
Cdd:COG3914   215 DA 216
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
184-274 3.43e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 56.72  E-value: 3.43e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 184 VAMSLSDFEMAIQAFDKALVMQPNNNNVLVNYSQALLIEGsepsMNRAARMLSKVLKNDPTNIDAISLLALIAYERQDWK 263
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQG----RYDEAIALEKALKLDPNNAEALLNLAELLLELGDYD 76

                          90
                  ....*....|.
gi 2030133838 264 ESKAAFEVLLS 274
Cdd:COG3063    77 EALAYLERALE 87
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
168-294 1.31e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 58.48  E-value: 1.31e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 168 LATAGDDAVAWMLLGRVAMSLSDFEMAIQAFDKALVMQPNNNNVLVNYSQALLIEGsepSMNRAARMLSKVLKNDPTNID 247
Cdd:COG0457    69 LELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELG---RYDEAIEAYERALELDPDDAD 145

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2030133838 248 AISLLALIAYERQDWKESKAAFEVLLSQLTKDDPRYEMIAGRIAEIE 294
Cdd:COG0457   146 ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAA 192
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
140-283 3.70e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 56.85  E-value: 3.70e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 140 YGERAVMQSGEPLNANELQAFALGLRTKLAT--AGDDAVAWMLLGRVAMSLSDFEMAIQAFDKALVMQPNNNNVLVNYSQ 217
Cdd:COG4785    36 ALAIALADLALALAAAALAAAALAAERIDRAlaLPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGL 115

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2030133838 218 ALLIEGSEPSmnrAARMLSKVLKNDPTNIDAISLLALIAYERQDWKESKAAFEVLLSQLTKDDPRY 283
Cdd:COG4785   116 AYLLLGDYDA---ALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERA 178
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 173-299 4.08e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 57.05  E-value: 4.08e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 173 DDAVAWMLLGRVAMSLSDFEMAIQAFDKALVMQPNNNNVLVNYSQALLIEGsepSMNRAARMLSKVLKNDPTNIDAISLL 252
Cdd:COG2956    40 ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG---LLDRAEELLEKLLELDPDDAEALRLL 116

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2030133838 253 ALIAYERQDWKESKAAFEvllsQLTKDDPRYEMIAGRIAEIEQKVGQ 299
Cdd:COG2956   117 AEIYEQEGDWEKAIEVLE----RLLKLGPENAHAYCELAELYLEQGD 159
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 156-273 1.05e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 54.20  E-value: 1.05e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 156 ELQAFALGLRTKLATAGDDAVAWMLLGRVAMSLSDFEMAIQAFDKALVMQPNNNNVLVNYSQALLIEGsepSMNRAARML 235
Cdd:COG5010    35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSG---DKDEAKEYY 111

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2030133838 236 SKVLKNDPTNIDAISLLALIAYERQDWKESKAAFEVLL 273
Cdd:COG5010   112 EKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRAL 149
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 177-339 1.54e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 57.02  E-value: 1.54e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 177 AWMLLGRVAMSLSDFEMAIQAFDKALVMQPNNNNVLVNYSQALLIEG-----------------SEPSMNRAARMLS--- 236
Cdd:TIGR02917 195 ALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGefeeaekhadallkkapNSPLAHYLKALVDfqk 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 237 -----------KVLKNDPTNIDAISLLALIAYERQDWKESKAAFEVLLSQLTKDDPryemiAGRI-AEIEQKVGQQTDEQ 304
Cdd:TIGR02917 275 knyedaretlqDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQ-----ARRLlASIQLRLGRVDEAI 349

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2030133838 305 VAVKAGI------VATVTISAE--LQNKIPTDSTlFVFAKAAE 339
Cdd:TIGR02917 350 ATLSPALgldpddPAALSLLGEayLALGDFEKAA-EYLAKATE 391
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 174-275 1.71e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 53.55  E-value: 1.71e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 174 DAVAWMLLGRVAMSLSDFEMAIQAFDKALVMQPNNNNVlVNYSQALLIEGSEPsmnRAARMLSKVLKNDPTNIDAISLLA 253
Cdd:TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA-IKLHRALLASGNTA---EAVKTLEAWLKTHPNDAVLRTALA 777

                          90       100
                  ....*....|....*....|..
gi 2030133838 254 LIAYERQDWKESKAAFEVLLSQ 275
Cdd:TIGR02917 778 ELYLAQKDYDKAIKHYQTVVKK 799
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 115-254 3.72e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 52.30  E-value: 3.72e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 115 GVFYYYTGSHRQ-IASWHEAVEKLPEYGErAVMQSGEPLNANELQAFALG-LRTKLATAGDDAVAWMLLGRVAMSLSDFE 192
Cdd:COG3914   119 GNLLLALGRLEEaLAALRRALALNPDFAE-AYLNLGEALRRLGRLEEAIAaLRRALELDPDNAEALNNLGNALQDLGRLE 197

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2030133838 193 MAIQAFDKALVMQPNNNNVLVNYSQALLIEGSEPSMNRAARMLSKvLKNDPTNIDAISLLAL 254
Cdd:COG3914   198 EAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAA-LARGPSELSPFALLYL 258
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 147-275 1.40e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 50.38  E-value: 1.40e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 147 QSGEPLNANELQAFALGLRTKLATAGDDAVAWMLLGRVAMSLSDFEMAIQAFDKALVMQPNNNNVLVNYSQALLIEGsep 226
Cdd:COG3914    50 ALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALG--- 126

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 2030133838 227 SMNRAARMLSKVLKNDPTNIDAISLLALIAYERQDWKESKAAFEVLLSQ 275
Cdd:COG3914   127 RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALEL 175
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 164-243 2.70e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.26  E-value: 2.70e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 164 LRTKLATAGDDAVAWMLLGRVAMSLSDFEMAIQAFDKALVMQPNNNNVLVNYSQALLIEGsepSMNRAARMLSKVLKNDP 243
Cdd:COG5010    77 LEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG---QDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
168-243 8.16e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.01  E-value: 8.16e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2030133838 168 LATAGDDAVAWMLLGRVAMSLSDFEMAIQaFDKALVMQPNNNNVLVNYSQALLIEGSEPsmnRAARMLSKVLKNDP 243
Cdd:COG3063    19 LELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYD---EALAYLERALELDP 90
TPR_1 pfam00515
Tetratricopeptide repeat;
175-208 8.78e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 42.41  E-value: 8.78e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 2030133838 175 AVAWMLLGRVAMSLSDFEMAIQAFDKALVMQPNN 208
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 175-208 9.79e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 42.05  E-value: 9.79e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2030133838  175 AVAWMLLGRVAMSLSDFEMAIQAFDKALVMQPNN 208
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 175-299 5.43e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 44.72  E-value: 5.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 175 AVAWMLLGRVAMSLSDFEMAIQAFDKALVMQPNNNNVLVNYSQALLIEGSepsMNRAARMLSKVLKNDPTNIDAISLLAL 254
Cdd:COG2956     8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGE---YDRAIRIHQKLLERDPDRAEALLELAQ 84

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2030133838 255 IAYERQDWKESKAAFEvllsQLTKDDPRYEMIAGRIAEIEQKVGQ 299
Cdd:COG2956    85 DYLKAGLLDRAEELLE----KLLELDPDDAEALRLLAEIYEQEGD 125
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 143-315 6.27e-05

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 45.46  E-value: 6.27e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838  143 RAVMQSGEPLNA--NELQAFALgLRTKLATAGDDavawMLLGRVAMSLSDFEMAIQAFDKALVMQPNNNNVLVNYSQALL 220
Cdd:PRK11447   574 DQVLETANRLRDsgKEAEAEAL-LRQQPPSTRID----LTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDI 648

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838  221 IEGSepsmNRAAR-MLSKVLKNDPTNIDAISLLALIAYERQDWKESKAAFEVLLSQLTKDDPRYE--MIAGRIAEIEQKV 297
Cdd:PRK11447   649 AQGD----LAAARaQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMEsaLVLRDAARFEAQT 724

                          170       180
                   ....*....|....*....|...
gi 2030133838  298 GQ-----QTDEQVAVKAGIVATV 315
Cdd:PRK11447   725 GQpqqalETYKDAMVASGITPTR 747
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
115-276 7.15e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 44.23  E-value: 7.15e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 115 GVFYYYTGSHRQ-IASWHEAVEKLPEYGE------RAVMQSGEPLNANELQAFALGLRtklataGDDAVAWMLLGRVAMS 187
Cdd:COG0457    49 GLAYLRLGRYEEaLADYEQALELDPDDAEalnnlgLALQALGRYEEALEDYDKALELD------PDDAEALYNLGLALLE 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 188 LSDFEMAIQAFDKALVMQPNNNNVLVNYSQALLIEGSEPSMNRAARMLSKVLKNDPTNIDAISLLALIAYERQDWKESKA 267
Cdd:COG0457   123 LGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLA 202


                  ....*....
gi 2030133838 268 AFEVLLSQL 276
Cdd:COG0457   203 LEQALRKKL 211
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 117-279 2.78e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.15  E-value: 2.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 117 FYYYTGSHRQIASWHE-AVEKLPEYGERAVMQSGEPLNANEL-QAFALgLRTKLATAGDDAVAWMLLGRVAMSLSDFEMA 194
Cdd:TIGR02917 542 LYLRTGNEEEAVAWLEkAAELNPQEIEPALALAQYYLGKGQLkKALAI-LNEAADAAPDSPEAWLMLGRAQLAAGDLNKA 620

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 195 IQAFDKALVMQPNNNNVLVnysqaLLIEGSEPSMN--RAARMLSKVLKNDPTNIDAISLLALIAYERQDWKESKAAFEVL 272
Cdd:TIGR02917 621 VSSFKKLLALQPDSALALL-----LLADAYAVMKNyaKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695


                  ....*..
gi 2030133838 273 LSQLTKD 279
Cdd:TIGR02917 696 QKQHPKA 702
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 115-357 2.83e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.15  E-value: 2.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 115 GVFYYYTGSHRQ-IASWHEAVEKLPEYGERAVMQSGEPLNANELQAFALGLRTKLATAGDDAVAWMLLGRVAMSLSDFEM 193
Cdd:TIGR02917 404 GISKLSQGDPSEaIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAK 483

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 194 AIQAFDKALVMQPNNNNVLVNYSQallIEGSEPSMNRAARMLSKVLKNDPTNIDAISLLALIAYERQDWKESKAafevLL 273
Cdd:TIGR02917 484 AREAFEKALSIEPDFFPAAANLAR---IDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVA----WL 556

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 274 SQLTKDDPryEMIAGRIAEIEQKVGQ-QTDEQVAVKAGIVAT---------VTISAELQNKiPTDSTLFVFAKAAE-GPA 342
Cdd:TIGR02917 557 EKAAELNP--QEIEPALALAQYYLGKgQLKKALAILNEAADAapdspeawlMLGRAQLAAG-DLNKAVSSFKKLLAlQPD 633

                         250
                  ....*....|....*
gi 2030133838 343 MPLAVAKITNFNLPM 357
Cdd:TIGR02917 634 SALALLLLADAYAVM 648
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 115-208 5.61e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.79  E-value: 5.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 115 GVFYYYTGSHRQ-IASWHEAVEKLPEYGE------RAVMQSGEPLNANELqafalgLRTKLATAGDDAVAWMLLGRVAMS 187
Cdd:COG4783    45 GEILLQLGDLDEaIVLLHEALELDPDEPEarlnlgLALLKAGDYDEALAL------LEKALKLDPEHPEAYLRLARAYRA 118

                          90       100
                  ....*....|....*....|.
gi 2030133838 188 LSDFEMAIQAFDKALVMQPNN 208
Cdd:COG4783   119 LGRPDEAIAALEKALELDPDD 139
TPR_19 pfam14559
Tetratricopeptide repeat;
229-290 7.14e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.56  E-value: 7.14e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2030133838 229 NRAARMLSKVLKNDPTNIDAISLLALIAYERQDWKESKAAFEVLLSQlTKDDPRYEMIAGRI 290
Cdd:pfam14559   5 AEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAA-DPDDPRYAALLAKL 65
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 175-207 1.43e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 35.96  E-value: 1.43e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2030133838 175 AVAWMLLGRVAMSLSDFEMAIQAFDKALVMQPN 207
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 127-278 1.45e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.84  E-value: 1.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 127 IASWHEAVEKLPeyGERAVMQSGEPLNANELQAFALG-LRTKLATAGDDAVAWMLLGRVAMSLSDFEMAIQAFDKALVMQ 205
Cdd:TIGR02917 723 IQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKtLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKA 800

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2030133838 206 PNNNNVLVNYSQALLiEGSEPsmnRAARMLSKVLKNDPTNIDAISLLALIAYERqdwKESKAAFEVLLSQLTK 278
Cdd:TIGR02917 801 PDNAVVLNNLAWLYL-ELKDP---RALEYAERALKLAPNIPAILDTLGWLLVEK---GEADRALPLLRKAVNI 866
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 227-324 1.78e-03

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 40.18  E-value: 1.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 227 SMNRAARMLSKVLKNDPTNIDAISLLALIAYERQDWKESKAAFEVLLSQltkdDPRY-EMIAGRIAEIEQKVGQQTD--- 302
Cdd:PRK11788  195 DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ----DPEYlSEVLPKLMECYQALGDEAEgle 270

                          90       100
                  ....*....|....*....|....*
gi 2030133838 303 ---EQVAVKAGIVATVTISAELQNK 324
Cdd:PRK11788  271 flrRALEEYPGADLLLALAQLLEEQ 295
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 56-297 2.37e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.45  E-value: 2.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838  56 EELKEElANQRIEKDSYNESVVELK------------RRLLNEL--------SPEQSLT---SRGDNRVLALTGIAFMVL 112
Cdd:TIGR02917  23 EELIEA-AKSYLQKNKYKAAIIQLKnalqkdpndaeaRFLLGKIylalgdyaAAEKELRkalSLGYPKNQVLPLLARAYL 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 113 VTGVFyyytgshrqiaswHEAVEKLPEYgeravmqsgePLNANELQAFALGLRTklatagddaVAWMLLGRvamslsdFE 192
Cdd:TIGR02917 102 LQGKF-------------QQVLDELPGK----------TLLDDEGAAELLALRG---------LAYLGLGQ-------LE 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 193 MAIQAFDKALVMQPNNNNVLVNYSQALLIEGSEPSmnrAARMLSKVLKNDPTNIDAISLLALIAYERQDWKESKAAFEVL 272
Cdd:TIGR02917 143 LAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDE---ARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKA 219

                         250       260
                  ....*....|....*....|....*
gi 2030133838 273 LsQLTKDDPRYEMIAGRIAEIEQKV 297
Cdd:TIGR02917 220 I-ALRPNNIAVLLALATILIEAGEF 243
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
173-292 2.95e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 39.13  E-value: 2.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 173 DDAVAWMLLGRVAMSLSDFEMAIQAFDKALVMQPNNNNVLVNYSQALLIEGSEPsmnRAARMLSKVLKNDPTNIDAISLL 252
Cdd:COG4785   105 DLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYE---LAIADLEKALELDPNDPERALWL 181

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2030133838 253 ALIayerqdwkESKAAFEVLLSQLTKDDPRYEMIAGRIAE 292
Cdd:COG4785   182 YLA--------ERKLDPEKALALLLEDWATAYLLQGDTEE 213
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 190-275 3.80e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 36.89  E-value: 3.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030133838 190 DFEMAIQAFDKALVMQPNNN---NVLVNYSQALLIEGsepSMNRAARMLSKVLKNDPTNI---DAISLLALIAYERQDWK 263
Cdd:COG1729     8 DYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALG---DYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYD 84

                          90
                  ....*....|..
gi 2030133838 264 ESKAAFEVLLSQ 275
Cdd:COG1729    85 KARATLEELIKK 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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