|
Name |
Accession |
Description |
Interval |
E-value |
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
12-500 |
0e+00 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 704.65 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 12 PAPLPELPFAFARNFGAI-LTERQGTPVLLCRQGISPQTLLEVRRVAGCAFAVEQLGNDEFETLLMAHYQRDSSeARQLM 90
Cdd:COG2804 75 PEVLELLPEELARRHRVLpLRLEGGTLTVAMADPLDLEALDELRRLTGRPVEPVVATESDIERALDRLYGSESS-IEELL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 91 EDLGNEmdffaLAEELPQSEDLLDADDDAPIIRLINAMLSEAIKEEASDIHIETFERALVIRFRIDGVLREILRPHRKLA 170
Cdd:COG2804 154 EELAED-----LTSEEEDLEDLLEEADDAPVVRLVNAILEDAIKEGASDIHIEPYEKRLRVRFRIDGVLREVLRLPKSLA 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 171 SLLVSRIKVMSRMDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSYGERVVLRLLDKNNVRLELKQLGMTLANRNIISEL 250
Cdd:COG2804 229 PALVSRIKIMANLDIAERRLPQDGRIKLRLGGREIDLRVSTLPTVYGEKVVLRILDKSAALLDLEQLGFSPDQLERLRRL 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 251 IRKPHGIILVTGPTGSGKSTTLYAALSEINSRDRNILTVEDPIEYDLEGVGQTQVNSKVDMTFARGLRAILRQDPDVVMV 330
Cdd:COG2804 309 IRRPHGIILVTGPTGSGKTTTLYAALNELNTPERNIITVEDPVEYQLPGINQVQVNPKIGLTFASALRSILRQDPDVIMV 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 331 GEIRDLETAQIAVQASLTGHLVMSTLHTNTAIGAITRMRDMGIEPFLLSSSLLAVLAQRLVRTLCPDCRAPHPVTEQERV 410
Cdd:COG2804 389 GEIRDLETAEIAVQAALTGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEPDPEELE 468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 411 AMGI--ELAPDQQIWRPVGCEQCNHTGYRGRTGIHELVVVDEAVREAIHSASGELAIERL-IRGHTPSIRRDGIDKVLKG 487
Cdd:COG2804 469 RLGLppEELAPLTFYRGVGCEHCNGTGYKGRTGIYELLVIDDELRELIAEGASAAELREAaRKEGMRTLREDGLEKVLQG 548
|
490
....*....|...
gi 2030725320 488 QTSLEEVLRVTRE 500
Cdd:COG2804 549 ITTLEEVLRVTGE 561
|
|
| type_II_gspE |
TIGR02533 |
type II secretion system protein E; This family describes GspE, the E protein of the type II ... |
15-498 |
0e+00 |
|
type II secretion system protein E; This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 131585 [Multi-domain] Cd Length: 486 Bit Score: 675.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 15 LPELPFAFARNFGA-ILTERQGTPVLLCRQGISPQTLLEVRRVAGCAFAVEQLGNDEFETLLMAHYQRDSSEARQLMEDL 93
Cdd:TIGR02533 1 VRRLPIGFAKQSRVlPLSEHDGTLVVAVSDPLDLAALDEVRRLFGAPVQLIIATASEIDDAINSVYARTGSAAAQIVEEI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 94 GNEMDFFALAEELPQSEDLLDADDDAPIIRLINAMLSEAIKEEASDIHIETFERALVIRFRIDGVLREILRPHRKLASLL 173
Cdd:TIGR02533 81 EGEDDLSALELDEPKIEDLLDLEDDAPVIRLVNSLLSRAVKERASDIHIEPFEKALVVRFRVDGVLRDVLSPPKKLHAAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 174 VSRIKVMSRMDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSYGERVVLRLLDKNNVRLELKQLGMTLANRNIISELIRK 253
Cdd:TIGR02533 161 VSRVKIMAKLNIAEKRLPQDGRISLRVGGRDIDIRVSTVPTSHGERVVMRLLDKTAVRLDLETLGMSPELLSRFERLIRR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 254 PHGIILVTGPTGSGKSTTLYAALSEINSRDRNILTVEDPIEYDLEGVGQTQVNSKVDMTFARGLRAILRQDPDVVMVGEI 333
Cdd:TIGR02533 241 PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 334 RDLETAQIAVQASLTGHLVMSTLHTNTAIGAITRMRDMGIEPFLLSSSLLAVLAQRLVRTLCPDCRAPHPVTEQERVAMG 413
Cdd:TIGR02533 321 RDLETAQIAIQASLTGHLVLSTLHTNDAAGAVTRLIDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEATPEEIALFG 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 414 IELAPDQQIWRPVGCEQCNHTGYRGRTGIHELVVVDEAVREAIHSASGELAIERLIRGH-TPSIRRDGIDKVLKGQTSLE 492
Cdd:TIGR02533 401 ISPEGPINLYRPVGCPHCNHTGYLGRTGIYELLIVDDDLRSLIHSRADEGEIKEIARAAgMRTLRDDGLRKVLAGITTIE 480
|
....*.
gi 2030725320 493 EVLRVT 498
Cdd:TIGR02533 481 EVLRVT 486
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
126-394 |
1.73e-143 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 412.45 E-value: 1.73e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 126 NAMLSEAIKEEASDIHIETFERALVIRFRIDGVLREILRPHRKLASLLVSRIKVMSRMDIAEKRVPQDGRISLRIGGRAV 205
Cdd:pfam00437 1 NLIPLEALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADALARLISRIKVMARLDISERRPPQDGRLPLRIGGKGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 206 DVRVSTMPSSYGERVVLRLLDKNNVRLELKQLGMTLANRNIISELIRKPHGIILVTGPTGSGKSTTLYAALSEINSRDRN 285
Cdd:pfam00437 81 RVRVSTLPTAGGEKLVIRLLDPSNVALSLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNTRDEN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 286 ILTVEDPIEYDLEGVGQTQVNSKVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAIGAI 365
Cdd:pfam00437 161 IVTVEDPVEIQLEGINQVQLNARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGAL 240
|
250 260
....*....|....*....|....*....
gi 2030725320 366 TRMRDMGIEPFLLSSSLLAVLAQRLVRTL 394
Cdd:pfam00437 241 TRLQDMGVPPFELASSLLLVIAQRLVRKL 269
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
120-498 |
1.27e-138 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 407.39 E-value: 1.27e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 120 PIIRLINAMLSEAIKEEASDIHIETFERALVIRFRIDGVLREILRPHRKLASLLVSRIKVMSRMDIAEKRVPQDGRISLR 199
Cdd:PRK10436 83 PVAQLINQTLQSALQKRASDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELGAALTARLKVLGNLDIAERRLPQDGQFTVE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 200 IGGRAVDVRVSTMPSSYGERVVLRLLDKNNVRLELKQLGMTLANRNIISELIRKPHGIILVTGPTGSGKSTTLYAALSEI 279
Cdd:PRK10436 163 LAGNAYSFRIATLPCRGGEKVVLRLLQQVQQALDLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTL 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 280 NSRDRNILTVEDPIEYDLEGVGQTQVNSKVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTN 359
Cdd:PRK10436 243 NTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGHLVLSTLHTN 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 360 TAIGAITRMRDMGIEPFLLSSSLLAVLAQRLVRTLCPDCRAPHpvteQERVAMGIELAPDQ-QIWRPVGCEQCNHtGYRG 438
Cdd:PRK10436 323 STSETLVRLQQMGIARWMLASALKLVIAQRLVRKLCPHCRQQA----SEPIHLPPNIWPGPlPHWQAVGCEHCYH-GYYG 397
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2030725320 439 RTGIHELVVVDEAVREAIHSASGELAIERLIRGH-TPSIRRDGIDKVLKGQTSLEEVLRVT 498
Cdd:PRK10436 398 RTALFEVLPITPVLQQAIASNASPEELETHARQQgMTTLFENGLLAVEQGLTTLEELYRVL 458
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
126-393 |
2.92e-92 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 281.64 E-value: 2.92e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 126 NAMLSEAIKEEASDIHIETFERALVIRFRIDGVLREILRPHRKLASLLVSRIKVMSRMDIAEKRVPQDGRISLRIGGRAV 205
Cdd:NF041000 1 EELIEEAIELRASDIHFLPREDGYQIKFRIGGGLIPYRELSLEEGQRLISYFKFLAGMDIGEKRRPQSGAFTYELNEQQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 206 DVRVSTMPSSYG-ERVVLRLL---DKNNVRLELKQLgmtlanRNIISELIRKPHGIILVTGPTGSGKSTTLYAaLSEINS 281
Cdd:NF041000 81 SLRLSTVGDFLGrESLVIRLLyqlEQIKPQLFFPEQ------FQLLKQLLQRRSGLILFSGPTGSGKTTTMYS-LARKLA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 282 RDRNILTVEDPIEYDLEGVGQTQVNSKVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTA 361
Cdd:NF041000 154 LNKQVITIEDPVEIKEPNFLQLQVNEKAGMTYDTLLKAALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSA 233
|
250 260 270
....*....|....*....|....*....|..
gi 2030725320 362 IGAITRMRDMGIEPFLLSSSLLAVLAQRLVRT 393
Cdd:NF041000 234 AGVIYRLLELGISKEELEQTLIGISYQRLIPT 265
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
245-392 |
4.34e-86 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 261.65 E-value: 4.34e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 245 NIISELIRKPHGIILVTGPTGSGKSTTLYAALSEINSRDRNILTVEDPIEYDLEGVGQTQVNSKVDMTFARGLRAILRQD 324
Cdd:cd01129 1 ARLRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPERNIITIEDPVEYQIPGINQSQVNEKIGLTFADALRAILRQD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2030725320 325 PDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAIGAITRMRDMGIEPFLLSSSLLAVLAQRLVR 392
Cdd:cd01129 81 PDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASALRGVIAQRLVG 148
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
254-370 |
2.48e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 44.29 E-value: 2.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 254 PHGIILVTGPTGSGKSTTLYAALSEINSRDRNILTV--EDPIEYDLEGVGQTQVNSKVDMTF----ARGLRAILRQ-DPD 326
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIdgEDILEEVLDQLLLIIVGGKKASGSgelrLRLALALARKlKPD 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2030725320 327 VVMVGEI----RDLETAQIAVQASLTGHLVMSTLHTNTAIGAITRMRD 370
Cdd:smart00382 81 VLILDEItsllDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
12-500 |
0e+00 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 704.65 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 12 PAPLPELPFAFARNFGAI-LTERQGTPVLLCRQGISPQTLLEVRRVAGCAFAVEQLGNDEFETLLMAHYQRDSSeARQLM 90
Cdd:COG2804 75 PEVLELLPEELARRHRVLpLRLEGGTLTVAMADPLDLEALDELRRLTGRPVEPVVATESDIERALDRLYGSESS-IEELL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 91 EDLGNEmdffaLAEELPQSEDLLDADDDAPIIRLINAMLSEAIKEEASDIHIETFERALVIRFRIDGVLREILRPHRKLA 170
Cdd:COG2804 154 EELAED-----LTSEEEDLEDLLEEADDAPVVRLVNAILEDAIKEGASDIHIEPYEKRLRVRFRIDGVLREVLRLPKSLA 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 171 SLLVSRIKVMSRMDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSYGERVVLRLLDKNNVRLELKQLGMTLANRNIISEL 250
Cdd:COG2804 229 PALVSRIKIMANLDIAERRLPQDGRIKLRLGGREIDLRVSTLPTVYGEKVVLRILDKSAALLDLEQLGFSPDQLERLRRL 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 251 IRKPHGIILVTGPTGSGKSTTLYAALSEINSRDRNILTVEDPIEYDLEGVGQTQVNSKVDMTFARGLRAILRQDPDVVMV 330
Cdd:COG2804 309 IRRPHGIILVTGPTGSGKTTTLYAALNELNTPERNIITVEDPVEYQLPGINQVQVNPKIGLTFASALRSILRQDPDVIMV 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 331 GEIRDLETAQIAVQASLTGHLVMSTLHTNTAIGAITRMRDMGIEPFLLSSSLLAVLAQRLVRTLCPDCRAPHPVTEQERV 410
Cdd:COG2804 389 GEIRDLETAEIAVQAALTGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEPDPEELE 468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 411 AMGI--ELAPDQQIWRPVGCEQCNHTGYRGRTGIHELVVVDEAVREAIHSASGELAIERL-IRGHTPSIRRDGIDKVLKG 487
Cdd:COG2804 469 RLGLppEELAPLTFYRGVGCEHCNGTGYKGRTGIYELLVIDDELRELIAEGASAAELREAaRKEGMRTLREDGLEKVLQG 548
|
490
....*....|...
gi 2030725320 488 QTSLEEVLRVTRE 500
Cdd:COG2804 549 ITTLEEVLRVTGE 561
|
|
| type_II_gspE |
TIGR02533 |
type II secretion system protein E; This family describes GspE, the E protein of the type II ... |
15-498 |
0e+00 |
|
type II secretion system protein E; This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 131585 [Multi-domain] Cd Length: 486 Bit Score: 675.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 15 LPELPFAFARNFGA-ILTERQGTPVLLCRQGISPQTLLEVRRVAGCAFAVEQLGNDEFETLLMAHYQRDSSEARQLMEDL 93
Cdd:TIGR02533 1 VRRLPIGFAKQSRVlPLSEHDGTLVVAVSDPLDLAALDEVRRLFGAPVQLIIATASEIDDAINSVYARTGSAAAQIVEEI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 94 GNEMDFFALAEELPQSEDLLDADDDAPIIRLINAMLSEAIKEEASDIHIETFERALVIRFRIDGVLREILRPHRKLASLL 173
Cdd:TIGR02533 81 EGEDDLSALELDEPKIEDLLDLEDDAPVIRLVNSLLSRAVKERASDIHIEPFEKALVVRFRVDGVLRDVLSPPKKLHAAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 174 VSRIKVMSRMDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSYGERVVLRLLDKNNVRLELKQLGMTLANRNIISELIRK 253
Cdd:TIGR02533 161 VSRVKIMAKLNIAEKRLPQDGRISLRVGGRDIDIRVSTVPTSHGERVVMRLLDKTAVRLDLETLGMSPELLSRFERLIRR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 254 PHGIILVTGPTGSGKSTTLYAALSEINSRDRNILTVEDPIEYDLEGVGQTQVNSKVDMTFARGLRAILRQDPDVVMVGEI 333
Cdd:TIGR02533 241 PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 334 RDLETAQIAVQASLTGHLVMSTLHTNTAIGAITRMRDMGIEPFLLSSSLLAVLAQRLVRTLCPDCRAPHPVTEQERVAMG 413
Cdd:TIGR02533 321 RDLETAQIAIQASLTGHLVLSTLHTNDAAGAVTRLIDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEATPEEIALFG 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 414 IELAPDQQIWRPVGCEQCNHTGYRGRTGIHELVVVDEAVREAIHSASGELAIERLIRGH-TPSIRRDGIDKVLKGQTSLE 492
Cdd:TIGR02533 401 ISPEGPINLYRPVGCPHCNHTGYLGRTGIYELLIVDDDLRSLIHSRADEGEIKEIARAAgMRTLRDDGLRKVLAGITTIE 480
|
....*.
gi 2030725320 493 EVLRVT 498
Cdd:TIGR02533 481 EVLRVT 486
|
|
| type_IV_pilB |
TIGR02538 |
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus ... |
69-500 |
1.27e-172 |
|
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274186 [Multi-domain] Cd Length: 564 Bit Score: 498.00 E-value: 1.27e-172
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 69 DEFETLLMAHYQRDSSEARQL-MEDLGN--EMDFFALAEELPQSEDLLDADDDAPIIRLINAMLSEAIKEEASDIHIETF 145
Cdd:TIGR02538 126 DKLSALIEKYYGGSDSLAKELgDEDIGDleELDVDAIDDEGPDDIEQDAVDDDAPIVKFVNKILLDAIRKGASDIHFEPY 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 146 ERALVIRFRIDGVLREILRPHRKLASLLVSRIKVMSRMDIAEKRVPQDGRISLRIG-GRAVDVRVSTMPSSYGERVVLRL 224
Cdd:TIGR02538 206 EKSYRVRFRIDGILHEVAQPPLALANRIAARIKVMSRLDIAEKRIPQDGRIKLKLSkSKAIDFRVSTLPTLFGEKVVLRI 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 225 LDKNNVRLELKQLGMTLANRNIISELIRKPHGIILVTGPTGSGKSTTLYAALSEINSRDRNILTVEDPIEYDLEGVGQTQ 304
Cdd:TIGR02538 286 LDSSAAQLDIDKLGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVN 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 305 VNSKVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAIGAITRMRDMGIEPFLLSSSLLA 384
Cdd:TIGR02538 366 VNPKIGLTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNDAPETLARLVNMGIAPFNIASSVNL 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 385 VLAQRLVRTLCPDCRAPHPVTEQERVAMGI--ELAPDQQIWRPVGCEQCNHTGYRGRTGIHELVVVDEAVREAIHSASGE 462
Cdd:TIGR02538 446 IMAQRLARRLCSHCKAPEEVPAEALLELGFtqEDLADLKLYGPVGCDECSNTGYKGRVGIYEVMPMSEEIAELILKGGNA 525
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 2030725320 463 LAIERLIR--GHTPsIRRDGIDKVLKGQTSLEEVLRVTRE 500
Cdd:TIGR02538 526 LQIAELAQkeGMRT-LRRSGLLKVKQGVTSLEEVLRVTVD 564
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
126-394 |
1.73e-143 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 412.45 E-value: 1.73e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 126 NAMLSEAIKEEASDIHIETFERALVIRFRIDGVLREILRPHRKLASLLVSRIKVMSRMDIAEKRVPQDGRISLRIGGRAV 205
Cdd:pfam00437 1 NLIPLEALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADALARLISRIKVMARLDISERRPPQDGRLPLRIGGKGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 206 DVRVSTMPSSYGERVVLRLLDKNNVRLELKQLGMTLANRNIISELIRKPHGIILVTGPTGSGKSTTLYAALSEINSRDRN 285
Cdd:pfam00437 81 RVRVSTLPTAGGEKLVIRLLDPSNVALSLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNTRDEN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 286 ILTVEDPIEYDLEGVGQTQVNSKVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAIGAI 365
Cdd:pfam00437 161 IVTVEDPVEIQLEGINQVQLNARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGAL 240
|
250 260
....*....|....*....|....*....
gi 2030725320 366 TRMRDMGIEPFLLSSSLLAVLAQRLVRTL 394
Cdd:pfam00437 241 TRLQDMGVPPFELASSLLLVIAQRLVRKL 269
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
120-498 |
1.27e-138 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 407.39 E-value: 1.27e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 120 PIIRLINAMLSEAIKEEASDIHIETFERALVIRFRIDGVLREILRPHRKLASLLVSRIKVMSRMDIAEKRVPQDGRISLR 199
Cdd:PRK10436 83 PVAQLINQTLQSALQKRASDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELGAALTARLKVLGNLDIAERRLPQDGQFTVE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 200 IGGRAVDVRVSTMPSSYGERVVLRLLDKNNVRLELKQLGMTLANRNIISELIRKPHGIILVTGPTGSGKSTTLYAALSEI 279
Cdd:PRK10436 163 LAGNAYSFRIATLPCRGGEKVVLRLLQQVQQALDLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTL 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 280 NSRDRNILTVEDPIEYDLEGVGQTQVNSKVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTN 359
Cdd:PRK10436 243 NTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGHLVLSTLHTN 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 360 TAIGAITRMRDMGIEPFLLSSSLLAVLAQRLVRTLCPDCRAPHpvteQERVAMGIELAPDQ-QIWRPVGCEQCNHtGYRG 438
Cdd:PRK10436 323 STSETLVRLQQMGIARWMLASALKLVIAQRLVRKLCPHCRQQA----SEPIHLPPNIWPGPlPHWQAVGCEHCYH-GYYG 397
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2030725320 439 RTGIHELVVVDEAVREAIHSASGELAIERLIRGH-TPSIRRDGIDKVLKGQTSLEEVLRVT 498
Cdd:PRK10436 398 RTALFEVLPITPVLQQAIASNASPEELETHARQQgMTTLFENGLLAVEQGLTTLEELYRVL 458
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
126-393 |
2.92e-92 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 281.64 E-value: 2.92e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 126 NAMLSEAIKEEASDIHIETFERALVIRFRIDGVLREILRPHRKLASLLVSRIKVMSRMDIAEKRVPQDGRISLRIGGRAV 205
Cdd:NF041000 1 EELIEEAIELRASDIHFLPREDGYQIKFRIGGGLIPYRELSLEEGQRLISYFKFLAGMDIGEKRRPQSGAFTYELNEQQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 206 DVRVSTMPSSYG-ERVVLRLL---DKNNVRLELKQLgmtlanRNIISELIRKPHGIILVTGPTGSGKSTTLYAaLSEINS 281
Cdd:NF041000 81 SLRLSTVGDFLGrESLVIRLLyqlEQIKPQLFFPEQ------FQLLKQLLQRRSGLILFSGPTGSGKTTTMYS-LARKLA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 282 RDRNILTVEDPIEYDLEGVGQTQVNSKVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTA 361
Cdd:NF041000 154 LNKQVITIEDPVEIKEPNFLQLQVNEKAGMTYDTLLKAALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSA 233
|
250 260 270
....*....|....*....|....*....|..
gi 2030725320 362 IGAITRMRDMGIEPFLLSSSLLAVLAQRLVRT 393
Cdd:NF041000 234 AGVIYRLLELGISKEELEQTLIGISYQRLIPT 265
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
245-392 |
4.34e-86 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 261.65 E-value: 4.34e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 245 NIISELIRKPHGIILVTGPTGSGKSTTLYAALSEINSRDRNILTVEDPIEYDLEGVGQTQVNSKVDMTFARGLRAILRQD 324
Cdd:cd01129 1 ARLRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPERNIITIEDPVEYQIPGINQSQVNEKIGLTFADALRAILRQD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2030725320 325 PDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAIGAITRMRDMGIEPFLLSSSLLAVLAQRLVR 392
Cdd:cd01129 81 PDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASALRGVIAQRLVG 148
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
125-393 |
2.36e-62 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 206.87 E-value: 2.36e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 125 INAMLSEAIKEEASDIHIETferALVIRFRIDGVLREIlrPHRKLASLLVSRIkVMSRMDIAEKRVPQDGR---ISLRIG 201
Cdd:COG2805 5 LDELLKLAVEQGASDLHLTV---GSPPMLRIDGELVPL--DDPPLTPEDLEAL-LKEILTEEQRERLEEEGeldFSYSLP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 202 GRAvDVRVSTMPSSYGERVVLRLLdkNNVRLELKQLGMTlanrNIISELIRKPHGIILVTGPTGSGKSTTLYAALSEIN- 280
Cdd:COG2805 79 GLG-RFRVNIFRQRGGVAAVLRLI--PSEIPTLEELGLP----PVLKELAELPRGLVLVTGPTGSGKSTTLAAMIDYINe 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 281 SRDRNILTVEDPIEYDLEG----VGQTQVNSKVDmTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTL 356
Cdd:COG2805 152 TRAKHIITIEDPIEFVHKHkkslINQREVGRDTP-SFANALRAALREDPDVILVGEMRDLETIEAALTAAETGHLVFATL 230
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 2030725320 357 HTNTAIGAITRMRDMgiepFLLSSSL----------LAVLAQRLVRT 393
Cdd:COG2805 231 HTNSAAQTIDRIIDV----FPPEEQAqirsqlaeslRGVISQRLLPR 273
|
|
| pilT_fam |
TIGR01420 |
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to ... |
125-457 |
7.95e-54 |
|
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. [Cell envelope, Surface structures, Cellular processes, Chemotaxis and motility]
Pssm-ID: 273613 Cd Length: 343 Bit Score: 184.45 E-value: 7.95e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 125 INAMLSEAIKEEASDIHIETferALVIRFRIDGVLREILRP---HRKLASLLVSrikVMS--RMDIAEKRVPQDGRISLR 199
Cdd:TIGR01420 2 LEEILREAVKLGASDIHLTA---GAPPAMRIDGDLVRIEFEpltPEDTQKLARE---ILSekQREEFEENGELDFSFSLP 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 200 IGGRavdVRVSTMPSSYGERVVLRLLDKNnvRLELKQLGMTlanrNIISELIRKPHGIILVTGPTGSGKSTTLYAALSEI 279
Cdd:TIGR01420 76 GVGR---FRVNAFYQRGGVALVLRLIPSK--IPTFEELGLP----PVLRELAERPRGLILVTGPTGSGKSTTLASMIDYI 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 280 NSR-DRNILTVEDPIEYDLEG----VGQTQVNSKVdMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMS 354
Cdd:TIGR01420 147 NKNkAYHIITIEDPIEYVHTNkrslINQREVGEDT-LSFANALRAALREDPDVILIGEMRDLETVELALTAAETGHLVFG 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 355 TLHTNTAIGAITRMRDMgiepFLLSSSL----------LAVLAQRLVRTlcpdcraphpvteqervamgielapdqqiwr 424
Cdd:TIGR01420 226 TLHTNSAAQTIERIIDV----FPAEEQEqirtqlaeslVAIISQRLLPK------------------------------- 270
|
330 340 350
....*....|....*....|....*....|...
gi 2030725320 425 pvgceqcnhTGYRGRTGIHELVVVDEAVREAIH 457
Cdd:TIGR01420 271 ---------ADGGGRVLAVEILINTPAVRNLIR 294
|
|
| PilT |
cd01131 |
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ... |
232-457 |
7.55e-50 |
|
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Pssm-ID: 410875 [Multi-domain] Cd Length: 223 Bit Score: 170.03 E-value: 7.55e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 232 LELKQLGMTlanrNIISELIRKPHGIILVTGPTGSGKSTTLYAALSEINS-RDRNILTVEDPIEY----DLEGVGQTQVN 306
Cdd:cd01131 2 PTFEELGLP----PVLKDLALKPRGLVLVTGPTGSGKSTTLAAMIDYINEtRSKHIITIEDPIEFvhkhKKSLINQREVG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 307 SKVDmTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAIGAITRMRDMgiepFllsssllavl 386
Cdd:cd01131 78 RDTE-SFAAALRAALREDPDVILVGEMRDLETIELALTAAETGHLVFSTLHTNSAAQTIDRIIDV----F---------- 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2030725320 387 aqrlvrtlcpdcraphPVTEQERVAmgIELApdqQIWRPVGCEQ-CNHTGYRGRTGIHELVVVDEAVREAIH 457
Cdd:cd01131 143 ----------------PPEQQEQVR--IQLA---SSLRGVISQRlLPKKDGGGRVAAFEILINTPAIRNLIR 193
|
|
| type_II_IV_secretion_ATPases |
cd19477 |
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP ... |
247-394 |
2.13e-48 |
|
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410885 [Multi-domain] Cd Length: 168 Bit Score: 164.49 E-value: 2.13e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 247 ISELIRKPhGIILVTGPTGSGKSTTLYAALSEINSrDRNILTVEDPIEYDL---EGVGQTQVNSKVdmTFARGLRAILRQ 323
Cdd:cd19477 3 IKDGIAIG-KNVIVCGGTGSGKTTYIKSILEFIPK-EERIISIEDTEEIVFkhhKNYTQLFFGGNI--TSADCLKSCLRQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 324 DPDVVMVGEIRDlETAQIAVQASLTGH-LVMSTLHTNTAIGAITRMRDMG------------IEPFLLSSSLLAVLAQRL 390
Cdd:cd19477 79 RPDRIILGELRS-SEAYDFYNVLCSGHkGTLTTLHAGSSEEAFIRLAN*SssnsaarnikfeSLIEGFKDLIDGIVHINH 157
|
....
gi 2030725320 391 VRTL 394
Cdd:cd19477 158 HKQC 161
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
256-393 |
1.35e-35 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 130.57 E-value: 1.35e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 256 GIILVTGPTGSGKSTTLYAALSEINSRD---RNILTVEDPIEYDLEGVG-------QTQVNSKVdMTFARGLRAILRQDP 325
Cdd:cd19516 12 GLVYVAGATGSGKSTLLAAIYRYILENDppdRKIITYEDPIEFVYDGIKskhsiivQSQIPRHF-KSFAKAVREALRRKP 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2030725320 326 DVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAIGAITRMRDMGIEP------FLLSSSLLAVLAQRLVRT 393
Cdd:cd19516 91 SLIGVGELRDQETISAAVEASLTGHPVYSTVHTKSVAETIRRLISLFPPEerdaaaYDLLSTLRFIIVQRLVRT 164
|
|
| PilU |
COG5008 |
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures]; |
246-393 |
6.49e-33 |
|
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures];
Pssm-ID: 444032 Cd Length: 370 Bit Score: 128.68 E-value: 6.49e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 246 IISELIRKPHGIILVTGPTGSGKSTTLyAALseINSRDRN----ILTVEDPIEYDLEG----VGQTQVNskVD-MTFARG 316
Cdd:COG5008 114 VLKDLIMEKRGLVLFVGATGSGKSTTL-AAM--IDHRNENssghILTIEDPIEFVHKHkksiVTQREVG--VDtESYEVA 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 317 LRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAIGAITRMrdmgIEPFLLSSSLL----------AVL 386
Cdd:COG5008 189 LKNALRQAPDVILIGEIRDRETMEHAIAFAETGHLCLATLHANNANQALDRI----INFFPEERRPQllmdlslnlrAIV 264
|
....*..
gi 2030725320 387 AQRLVRT 393
Cdd:COG5008 265 SQRLVPT 271
|
|
| plasmid_TraJ |
TIGR02525 |
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated ... |
134-393 |
4.84e-26 |
|
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 131577 [Multi-domain] Cd Length: 372 Bit Score: 109.12 E-value: 4.84e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 134 KEEASDIHIETFERALVIRFRidgvlREILRPHRKLASLLVSRI--KVMSRmDI---------AEKRVPQDGRISLRIG- 201
Cdd:TIGR02525 21 RHEVSDIHLQGGSPIVVERHG-----RQVPASSFPLDNLELERLvdEVFGP-EIkptvksgapVDRAIQLRGDENGRYGl 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 202 GRAVDVRVS---TMPSSYGER----VVLRLLdkNNVRLELKQLGMtlaNRNIISELIRKpHGIILVTGPTGSGKSTTLYA 274
Cdd:TIGR02525 95 GRGERVRFRcnfIQATIGKLEtaisLTLRVI--PSDIPDLKQMGI---EPDLFNSLLPA-AGLGLICGETGSGKSTLAAS 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 275 ALSEI--NSRDRNILTVEDPIEYDLEGVG------QTQVNSKVDmTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQAS 346
Cdd:TIGR02525 169 IYQHCgeTYPDRKIVTYEDPIEYILGSPDdllppaQSQIGRDVD-SFANGIRLALRRAPKIIGVGEIRDLETFQAAVLAG 247
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 2030725320 347 LTGHLVMSTLHTNTAIGAITR--------MRDMGiePFLLSSSLLAVLAQRLVRT 393
Cdd:TIGR02525 248 QSGHFCLGTLHVKSPGEAISRclqmyppeMREAA--AFDLLSILQYIIVQRLLRT 300
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
258-374 |
2.38e-20 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 88.37 E-value: 2.38e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 258 ILVTGPTGSGKSTTLYAALSEINSRDRnILTVED------------PIEYDLEGVGQTQVnskvdmTFARGLRAILRQDP 325
Cdd:cd01130 15 ILISGGTGSGKTTLLNALLSFIPPDER-IVTIEDtrelqlphpnvvHLLTRPGGGEKGEV------TMADLLKAALRMRP 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 2030725320 326 DVVMVGEIRDLEtAQIAVQASLTGHL-VMSTLHTNTAIGAITRMRDMGIE 374
Cdd:cd01130 88 DRIIVGEVRGGE-AYDMLQAMNTGHPgSITTIHANSAEDAIDRLATLVLE 136
|
|
| VirB11 |
COG0630 |
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ... |
255-375 |
8.54e-18 |
|
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440395 [Multi-domain] Cd Length: 462 Bit Score: 85.90 E-value: 8.54e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 255 HGIILVTGPTGSGKSTTLYAALSEINSRDRnILTVEDPIEYDL-----------EGVGQTQvnSKVDMtFARgLRAILRQ 323
Cdd:COG0630 290 GKSVLVAGGTASGKTTLLNALLSFIPPDAK-IVTIEDTRELNLphenwislvtrESFGGEE--GDVTM-FDL-LKAALRQ 364
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2030725320 324 DPDVVMVGEIRDLEtAQIAVQASLTGHLVMSTLHTNTAIGAITRMRD--MGIEP 375
Cdd:COG0630 365 RPDYIVVGEVRGEE-AYTLFQAMATGHGVLSTFHADSVESAINRLTSppINVPR 417
|
|
| PRK13894 |
PRK13894 |
conjugal transfer ATPase TrbB; Provisional |
239-369 |
3.61e-11 |
|
conjugal transfer ATPase TrbB; Provisional
Pssm-ID: 184377 Cd Length: 319 Bit Score: 64.38 E-value: 3.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 239 MTLANRNIISELIRKpHGIILVTGPTGSGKSTTLYAALSEINSRDRN--ILTVEDPIEYDLEGVGQTQVNSKVDMTFARG 316
Cdd:PRK13894 133 MTAAQREAIIAAVRA-HRNILVIGGTGSGKTTLVNAIINEMVIQDPTerVFIIEDTGEIQCAAENYVQYHTSIDVNMTAL 211
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2030725320 317 LRAILRQDPDVVMVGEIRDLETAQIaVQASLTGHL-VMSTLHTNTAIGAITRMR 369
Cdd:PRK13894 212 LKTTLRMRPDRILVGEVRGPEALDL-LMAWNTGHEgGAATLHANNAKAGLDRLK 264
|
|
| PRK13833 |
PRK13833 |
conjugal transfer protein TrbB; Provisional |
239-374 |
4.20e-08 |
|
conjugal transfer protein TrbB; Provisional
Pssm-ID: 172360 [Multi-domain] Cd Length: 323 Bit Score: 54.80 E-value: 4.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 239 MTLANRNIISELIRKPHGIIlVTGPTGSGKSTTLYAALSEI--NSRDRNILTVEDPIEydLEGVGQTQV----NSKVDMt 312
Cdd:PRK13833 129 MTEAQASVIRSAIDSRLNIV-ISGGTGSGKTTLANAVIAEIvaSAPEDRLVILEDTAE--IQCAAENAValhtSDTVDM- 204
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2030725320 313 fARGLRAILRQDPDVVMVGEIRDlETAQIAVQASLTGHL-VMSTLHTNTAIGAITRMRDMGIE 374
Cdd:PRK13833 205 -ARLLKSTMRLRPDRIIVGEVRD-GAALTLLKAWNTGHPgGVTTIHSNTAMSALRRLEQLTAE 265
|
|
| PRK13900 |
PRK13900 |
type IV secretion system ATPase VirB11; Provisional |
258-371 |
2.72e-06 |
|
type IV secretion system ATPase VirB11; Provisional
Pssm-ID: 184381 Cd Length: 332 Bit Score: 49.37 E-value: 2.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 258 ILVTGPTGSGKSTTLYAALSEINSRDRnILTVEDPIEYDLE-------------GVGQTQVNSKvDMtfargLRAILRQD 324
Cdd:PRK13900 163 IIISGGTSTGKTTFTNAALREIPAIER-LITVEDAREIVLSnhpnrvhllaskgGQGRAKVTTQ-DL-----IEACLRLR 235
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2030725320 325 PDVVMVGEIRDLEtAQIAVQASLTGHL-VMSTLHTNTAIGAITRMRDM 371
Cdd:PRK13900 236 PDRIIVGELRGAE-AFSFLRAINTGHPgSISTLHADSPAMAIEQLKLM 282
|
|
| PRK13851 |
PRK13851 |
type IV secretion system protein VirB11; Provisional |
258-368 |
9.55e-06 |
|
type IV secretion system protein VirB11; Provisional
Pssm-ID: 172375 Cd Length: 344 Bit Score: 47.58 E-value: 9.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 258 ILVTGPTGSGKSTTLYAALSEINSRDRnILTVEDPIE------------YDLEGVGQTQVNSKvdmtfaRGLRAILRQDP 325
Cdd:PRK13851 165 MLLCGPTGSGKTTMSKTLISAIPPQER-LITIEDTLElviphenhvrllYSKNGAGLGAVTAE------HLLQASLRMRP 237
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 2030725320 326 DVVMVGEIRDlETAQIAVQASLTGHL-VMSTLHTNTAIGAITRM 368
Cdd:PRK13851 238 DRILLGEMRD-DAAWAYLSEVVSGHPgSISTIHGANPVQGFKKL 280
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
254-370 |
2.48e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 44.29 E-value: 2.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 254 PHGIILVTGPTGSGKSTTLYAALSEINSRDRNILTV--EDPIEYDLEGVGQTQVNSKVDMTF----ARGLRAILRQ-DPD 326
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIdgEDILEEVLDQLLLIIVGGKKASGSgelrLRLALALARKlKPD 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2030725320 327 VVMVGEI----RDLETAQIAVQASLTGHLVMSTLHTNTAIGAITRMRD 370
Cdd:smart00382 81 VLILDEItsllDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
255-305 |
3.85e-04 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 41.71 E-value: 3.85e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 2030725320 255 HGIILVTGPTGSGKSTTLYA---AL---SEINSRDRNILTVEDPIEYDLEGVGQTQV 305
Cdd:pfam13476 18 KGLTLITGPNGSGKTTILDAiklALygkTSRLKRKSGGGFVKGDIRIGLEGKGKAYV 74
|
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
253-274 |
3.73e-03 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 35.65 E-value: 3.73e-03
|
| AAA_22 |
pfam13401 |
AAA domain; |
251-292 |
3.85e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 37.71 E-value: 3.85e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 2030725320 251 IRKPHGIILVTGPTGSGKSTTLYAALSEINSRDRNILTVEDP 292
Cdd:pfam13401 1 IRFGAGILVLTGESGTGKTTLLRRLLEQLPEVRDSVVFVDLP 42
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
212-272 |
3.87e-03 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 39.24 E-value: 3.87e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2030725320 212 MPSSYGERVVLRLLDKNNVRLELKQLGMTLANR----NIISELIRKPHGIILVtGPTGSGKSTTL 272
Cdd:TIGR03499 148 VSEELARELLEKLPEDADAEDAWRWLREALEGMlpvkPEEDPILEQGGVIALV-GPTGVGKTTTL 211
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
238-375 |
4.07e-03 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 37.90 E-value: 4.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030725320 238 GMTLANRNIISELIRKPHGIILVTGPTGSGKSTTLYAALSEINSRDRNILTVEDPIEYdlegvGQTQVNSKVDMTFARGL 317
Cdd:cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLL-----EGLVVAELFGHFLVRLL 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2030725320 318 RAILRQ-DPDVVMVGEIRDL--ETAQIAVQASLTGHLVMSTLHTNTAIGAITRMRDMGIEP 375
Cdd:cd00009 77 FELAEKaKPGVLFIDEIDSLsrGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDR 137
|
|
| |
