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Conserved domains on  [gi|2030723980|gb|QUM03658|]
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breast and ovarian cancer susceptibility 1, partial [Cercartetus caudatus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BRCT_assoc super family cl15108
Serine-rich domain associated with BRCT; This domain is found on BRCA1 proteins.
 1-76 6.45e-25

Serine-rich domain associated with BRCT; This domain is found on BRCA1 proteins.


The actual alignment was detected with superfamily member pfam12820:

Pssm-ID: 463719  Cd Length: 164  Bit Score: 101.39  E-value: 6.45e-25
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2030723980   1 SNISEKTDPVADTMDDAWLHVPERSCPRPAENNnIEDKIFGKTYRRKSGHPNLSCITENLFVEAVAPDSLIPPEPP 76
Cdd:pfam12820  79 SGSSEKIDLMADDPHGALICESERVHSKPVENN-IEDKIFGKTYRRKASLPNLSHITERLILGAFAKEPQITQEHP 153
 
Name Accession Description Interval E-value
BRCT_assoc pfam12820
Serine-rich domain associated with BRCT; This domain is found on BRCA1 proteins.
 1-76 6.45e-25

Serine-rich domain associated with BRCT; This domain is found on BRCA1 proteins.


Pssm-ID: 463719  Cd Length: 164  Bit Score: 101.39  E-value: 6.45e-25
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2030723980   1 SNISEKTDPVADTMDDAWLHVPERSCPRPAENNnIEDKIFGKTYRRKSGHPNLSCITENLFVEAVAPDSLIPPEPP 76
Cdd:pfam12820  79 SGSSEKIDLMADDPHGALICESERVHSKPVENN-IEDKIFGKTYRRKASLPNLSHITERLILGAFAKEPQITQEHP 153
 
Name Accession Description Interval E-value
BRCT_assoc pfam12820
Serine-rich domain associated with BRCT; This domain is found on BRCA1 proteins.
 1-76 6.45e-25

Serine-rich domain associated with BRCT; This domain is found on BRCA1 proteins.


Pssm-ID: 463719  Cd Length: 164  Bit Score: 101.39  E-value: 6.45e-25
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2030723980   1 SNISEKTDPVADTMDDAWLHVPERSCPRPAENNnIEDKIFGKTYRRKSGHPNLSCITENLFVEAVAPDSLIPPEPP 76
Cdd:pfam12820  79 SGSSEKIDLMADDPHGALICESERVHSKPVENN-IEDKIFGKTYRRKASLPNLSHITERLILGAFAKEPQITQEHP 153
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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