NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2049113555|gb|QWF43027|]
View 

flagellar hook assembly protein FlgD [Bordetella hinzii]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FLgD_tudor super family cl29105
FlgD Tudor-like domain; This domain has a tudor domain-like beta barrel fold. It is found in ...
 1-230 1.59e-124

FlgD Tudor-like domain; This domain has a tudor domain-like beta barrel fold. It is found in the FlgD protein the flagellar hook capping protein. The structure for this domain shows that it contains a nested Ig-like domain within it. However in some firmicute proteins this inserted domain is absent such as Q67K21.


The actual alignment was detected with superfamily member PRK12633:

Pssm-ID: 452922 [Multi-domain]  Cd Length: 230  Bit Score: 351.97  E-value: 1.59e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555   1 MTTVNSTSNVNNAQVGQATS-NAAKSIQDQFLTLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGITNLNNTLLSISGQI 79
Cdd:PRK12633    1 MTTVNETTSQAGLALAQAGSnSAAQGIQDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAISGQI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555  80 DVSQSMDAVSLIGKAVLVPGNKISLGTDADDPTRRTATPLGYDVPSDAAKLTIKILDAAGNVVRTVEQTDVATGVYTYAW 159
Cdd:PRK12633   81 DVSQSMDAVSMIGKGVLMPGDKVSLGTDPNDPAQRGATPFGIDLQGDATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQW 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2049113555 160 DGNNDSGGAVKDGAYTFQVTAFDADNKAVAAEALSYGVVKSVDYSNNGLRLDLGLnGGKVSMLDIRKVLNG 230
Cdd:PRK12633  161 DGNNDGGQPLADGKYSITVSASDADAKPVKAEALTYGQVKSVAYSTNGLRLDLGL-AGQISMLDVRKVIGA 230
 
Name Accession Description Interval E-value
flgD PRK12633
flagellar basal body rod modification protein; Provisional
 1-230 1.59e-124

flagellar basal body rod modification protein; Provisional


Pssm-ID: 183638 [Multi-domain]  Cd Length: 230  Bit Score: 351.97  E-value: 1.59e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555   1 MTTVNSTSNVNNAQVGQATS-NAAKSIQDQFLTLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGITNLNNTLLSISGQI 79
Cdd:PRK12633    1 MTTVNETTSQAGLALAQAGSnSAAQGIQDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAISGQI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555  80 DVSQSMDAVSLIGKAVLVPGNKISLGTDADDPTRRTATPLGYDVPSDAAKLTIKILDAAGNVVRTVEQTDVATGVYTYAW 159
Cdd:PRK12633   81 DVSQSMDAVSMIGKGVLMPGDKVSLGTDPNDPAQRGATPFGIDLQGDATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQW 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2049113555 160 DGNNDSGGAVKDGAYTFQVTAFDADNKAVAAEALSYGVVKSVDYSNNGLRLDLGLnGGKVSMLDIRKVLNG 230
Cdd:PRK12633  161 DGNNDGGQPLADGKYSITVSASDADAKPVKAEALTYGQVKSVAYSTNGLRLDLGL-AGQISMLDVRKVIGA 230
FlgD COG1843
Flagellar hook-capping protein FlgD [Cell motility];
1-229 3.23e-70

Flagellar hook-capping protein FlgD [Cell motility];


Pssm-ID: 441448 [Multi-domain]  Cd Length: 223  Bit Score: 214.10  E-value: 3.23e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555   1 MTTVNSTSNVNNAQVGQATSNAAKSI---QDQFLTLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGITNLNNTLLSISG 77
Cdd:COG1843     1 MATSSSSSVLSSLSTSSTSSSSSSSSslgKDDFLKLLVAQLQNQDPLNPMDNTEFIAQLAQFSTVEQIENLNTTLESLAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555  78 QIDVSQSMDAVSLIGKAVLVPGNKISLGTDaddptrrtATPLGYDVPSDAAKLTIKILDAAGNVVRTVEQTDVATGVYTY 157
Cdd:COG1843    81 SLTSSQALQASSLIGKEVLVEGNTISLDGG--------SASGGFELPSAADSVTVTITDANGNVVRTIDLGAQSAGVHTF 152

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2049113555 158 AWDGNNDSGGAVKDGAYTFQVTAFDaDNKAVAAEALSYGVVKSVDYSNNGLRLDLGlNGGKVSMLDIRKVLN 229
Cdd:COG1843   153 TWDGTDDDGNALPDGTYTFSVEATD-DGEPVTATTLVYGKVTSVTLSGGGPVLNLG-GGGSVPLSDVTEIRD 222
FLgD_tudor pfam13861
FlgD Tudor-like domain; This domain has a tudor domain-like beta barrel fold. It is found in ...
 82-225 8.09e-38

FlgD Tudor-like domain; This domain has a tudor domain-like beta barrel fold. It is found in the FlgD protein the flagellar hook capping protein. The structure for this domain shows that it contains a nested Ig-like domain within it. However in some firmicute proteins this inserted domain is absent such as Q67K21.


Pssm-ID: 433533  Cd Length: 136  Bit Score: 128.48  E-value: 8.09e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555  82 SQSMDAVSLIGKAVLVPGNKISLGTDaddptrrTATPLGYDVPSDAAKLTIKILDAAGNVVRTVEQTDVATGVYTYAWDG 161
Cdd:pfam13861   1 SQALQAASLIGKEVLVPGDTISLSAD-------GGATGGVELPSAADNVTVTIYDSSGQVVRTIDLGAQAAGNVSFTWDG 73

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2049113555 162 NNDSGGAVKDGAYTFQVTAfDADNKAVAAEALSYGVVKSVDYSNNG-LRLDLGLnGGKVSMLDIR 225
Cdd:pfam13861  74 KDSDGNQLPDGTYTFSVTA-TADGTSVAVTTLVYGTVDSVSLGGDGgPLLNLGL-GGTVPLSDVR 136
 
Name Accession Description Interval E-value
flgD PRK12633
flagellar basal body rod modification protein; Provisional
 1-230 1.59e-124

flagellar basal body rod modification protein; Provisional


Pssm-ID: 183638 [Multi-domain]  Cd Length: 230  Bit Score: 351.97  E-value: 1.59e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555   1 MTTVNSTSNVNNAQVGQATS-NAAKSIQDQFLTLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGITNLNNTLLSISGQI 79
Cdd:PRK12633    1 MTTVNETTSQAGLALAQAGSnSAAQGIQDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAISGQI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555  80 DVSQSMDAVSLIGKAVLVPGNKISLGTDADDPTRRTATPLGYDVPSDAAKLTIKILDAAGNVVRTVEQTDVATGVYTYAW 159
Cdd:PRK12633   81 DVSQSMDAVSMIGKGVLMPGDKVSLGTDPNDPAQRGATPFGIDLQGDATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQW 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2049113555 160 DGNNDSGGAVKDGAYTFQVTAFDADNKAVAAEALSYGVVKSVDYSNNGLRLDLGLnGGKVSMLDIRKVLNG 230
Cdd:PRK12633  161 DGNNDGGQPLADGKYSITVSASDADAKPVKAEALTYGQVKSVAYSTNGLRLDLGL-AGQISMLDVRKVIGA 230
FlgD COG1843
Flagellar hook-capping protein FlgD [Cell motility];
1-229 3.23e-70

Flagellar hook-capping protein FlgD [Cell motility];


Pssm-ID: 441448 [Multi-domain]  Cd Length: 223  Bit Score: 214.10  E-value: 3.23e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555   1 MTTVNSTSNVNNAQVGQATSNAAKSI---QDQFLTLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGITNLNNTLLSISG 77
Cdd:COG1843     1 MATSSSSSVLSSLSTSSTSSSSSSSSslgKDDFLKLLVAQLQNQDPLNPMDNTEFIAQLAQFSTVEQIENLNTTLESLAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555  78 QIDVSQSMDAVSLIGKAVLVPGNKISLGTDaddptrrtATPLGYDVPSDAAKLTIKILDAAGNVVRTVEQTDVATGVYTY 157
Cdd:COG1843    81 SLTSSQALQASSLIGKEVLVEGNTISLDGG--------SASGGFELPSAADSVTVTITDANGNVVRTIDLGAQSAGVHTF 152

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2049113555 158 AWDGNNDSGGAVKDGAYTFQVTAFDaDNKAVAAEALSYGVVKSVDYSNNGLRLDLGlNGGKVSMLDIRKVLN 229
Cdd:COG1843   153 TWDGTDDDGNALPDGTYTFSVEATD-DGEPVTATTLVYGKVTSVTLSGGGPVLNLG-GGGSVPLSDVTEIRD 222
flgD PRK06655
flagellar hook assembly protein FlgD;
1-228 3.01e-67

flagellar hook assembly protein FlgD;


Pssm-ID: 235847 [Multi-domain]  Cd Length: 225  Bit Score: 206.72  E-value: 3.01e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555   1 MTTVNSTSNVNNAQVGQATSNAAKS-----IQDQFLTLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGITNLNNTLLSI 75
Cdd:PRK06655    1 MSIANTVGSSSTSGLSTTSSSSSSKkgaadLQDDFLTLLVAQLKNQDPLNPMDNSQMTSQLAQFSTVSGIEKLNTTLGSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555  76 SGQIDVSQSMDAVSLIGKAVLVPGNKISLGTDaddptrrTATPLGYDVPSDAAKLTIKILDAAGNVVRTVEQTDVATGVY 155
Cdd:PRK06655   81 SSQMTSSQALQASSLVGRGVLVPGDTVLVGTG-------GTTPFGVELPSAADNVTVTITDSAGQVVRTIDLGAQSAGVV 153

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2049113555 156 TYAWDGNNDSGGAVKDGAYTFQVTAfDADNKAVAAEALSYGVVKSVDYSNNGLRLDLGLNGGKVSMLDIRKVL 228
Cdd:PRK06655  154 SFTWDGTDTDGNALPDGNYTIKASA-SVGGKQLVAQTLTYANVQSVSLGANGGGLDLNLAGTGVTLSDVRQIL 225
FLgD_tudor pfam13861
FlgD Tudor-like domain; This domain has a tudor domain-like beta barrel fold. It is found in ...
 82-225 8.09e-38

FlgD Tudor-like domain; This domain has a tudor domain-like beta barrel fold. It is found in the FlgD protein the flagellar hook capping protein. The structure for this domain shows that it contains a nested Ig-like domain within it. However in some firmicute proteins this inserted domain is absent such as Q67K21.


Pssm-ID: 433533  Cd Length: 136  Bit Score: 128.48  E-value: 8.09e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555  82 SQSMDAVSLIGKAVLVPGNKISLGTDaddptrrTATPLGYDVPSDAAKLTIKILDAAGNVVRTVEQTDVATGVYTYAWDG 161
Cdd:pfam13861   1 SQALQAASLIGKEVLVPGDTISLSAD-------GGATGGVELPSAADNVTVTIYDSSGQVVRTIDLGAQAAGNVSFTWDG 73

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2049113555 162 NNDSGGAVKDGAYTFQVTAfDADNKAVAAEALSYGVVKSVDYSNNG-LRLDLGLnGGKVSMLDIR 225
Cdd:pfam13861  74 KDSDGNQLPDGTYTFSVTA-TADGTSVAVTTLVYGTVDSVSLGGDGgPLLNLGL-GGTVPLSDVR 136
flgD PRK12813
flagellar basal body rod modification protein; Reviewed
 1-220 2.71e-29

flagellar basal body rod modification protein; Reviewed


Pssm-ID: 237214 [Multi-domain]  Cd Length: 223  Bit Score: 109.04  E-value: 2.71e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555   1 MTTVNSTSNVNNAQVGQATSNAAKSIQDQ---FLTLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGITNLNNTLLSISG 77
Cdd:PRK12813    3 IVTGTVTSPGTTTGSSRGSASAASALTSDfetFLRMLTTQLQNQDPLNPMDSSDYAAQLATFSGVEQQVKTNDLLTGLGA 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555  78 QIDVSQSMDAVSLIGKAVLVPGNKISLGTdaddPTRRTATPlgydvPSDAAKLTIKILDAAGNVvrtVEQTDVATGVYTY 157
Cdd:PRK12813   83 SLGVMGLSQLAGWIGREARAEAPVWFDGT----PVTISPNP-----AADADKAELVVRDAAGAE---VARETVPVGAGPV 150

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2049113555 158 AWDGNNDSGGAVKDGAYTFQVTAFDADNKAVAAEALSYGVVKSVDYSNNGLRLDLgLNGGKVS 220
Cdd:PRK12813  151 EWAGEDADGNPLPNGAYSFVVESYSGGELLDTEPAEVYSRIVEAQGGSGGTVLVL-EGGIEVP 212
flgD PRK12812
flagellar basal body rod modification protein; Reviewed
 2-202 3.93e-28

flagellar basal body rod modification protein; Reviewed


Pssm-ID: 139245 [Multi-domain]  Cd Length: 259  Bit Score: 107.27  E-value: 3.93e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555   2 TTVNSTSNVNNAQVGQATSNAAKSI---------QDQFLTLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGITNLNNTL 72
Cdd:PRK12812   12 TATTSTTTKSASTSGATRTDSSSSTgsnpnsqldKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLAALEMQENTNTTM 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555  73 LSISGQIDVSQSMDAVSLIGKAVLVPGNKISLGTDADDptrrtaTPLGYDVPSDAAKLTIKILDAAGNVVRTVEQTDVAT 152
Cdd:PRK12812   92 QKLVEQMQSSMSTSALSALGKMATVSDNAVKLTGADEL------IALKLYFPEDSDEGTLEIYDSNNKLVEKIDFKEISQ 165

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2049113555 153 GVYTYAWDGNNDSGGAVKDGAYTFQVTAFDADNKAVAAEALSYGV--VKSVD 202
Cdd:PRK12812  166 GLFTMEWDGRDNDGVYAGDGEYTIKAVYNNKNGEKITANYGTYPVeaVKFVD 217
flgD PRK12634
flagellar basal body rod modification protein; Reviewed
 1-212 2.79e-24

flagellar basal body rod modification protein; Reviewed


Pssm-ID: 183639 [Multi-domain]  Cd Length: 221  Bit Score: 96.15  E-value: 2.79e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555   1 MTTVNStsNVNNAQVGQATSNAAKSI----QDQFLTLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGITNLNNTLLSIS 76
Cdd:PRK12634    1 MSTIAS--DLYKSLGLSTSSKTAKKEealgQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVSNFS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555  77 GQIDVSQSMDAVSLIGKAVLVPGNKISLGTDADDPTRRTATPLGYdvpsdaakLTIKILDAAGNVVRTVEQTDVATGVYT 156
Cdd:PRK12634   79 DSMSSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGF--------VNFEITDANGAFVKQISVPASAAGEVS 150

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2049113555 157 YAWDGNNDSGGAVKDGAYTFQVTAFDADNKAVAAEALSYGVVKSVDYSNNGLRLDL 212
Cdd:PRK12634  151 FAWDGTDANGNRMAAGKYGVTATQTDTAGSKSKLSTYVQAPVDSVTIGSDGLYLNL 206
FlgD pfam03963
Flagellar hook capping protein - N-terminal region; FlgD is known to be absolutely required ...
 2-72 3.71e-22

Flagellar hook capping protein - N-terminal region; FlgD is known to be absolutely required for hook assembly, yet it has not been detected in the mature flagellum. It appears to act as a hook-capping protein to enable assembly of hook protein subunits. FlgD regulates the assembly of the hook cap structure to prevent leakage of hook monomers into the medium and hook monomer polymerization and also plays a role in determination of the correct hook length, with the help of the FliK protein. This family represents the N-terminal conserved region of FlgD. A recent crystal structure showed that this region was likely to be flexible and was cleaved off during crystallization.


Pssm-ID: 427619 [Multi-domain]  Cd Length: 75  Bit Score: 86.14  E-value: 3.71e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2049113555   2 TTVNSTSNVNNAQVGQATSNAAKSI--QDQFLTLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGITNLNNTL 72
Cdd:pfam03963   1 TTSTNSSSTTSTSSSSSTSAKSSSTlgKDDFLKLLTTQLQNQDPLNPMDNTQFTSQLAQFSSVEQIEKLNKTL 73
flgD PRK09618
flagellar hook assembly protein FlgD;
1-95 1.08e-18

flagellar hook assembly protein FlgD;


Pssm-ID: 236594 [Multi-domain]  Cd Length: 142  Bit Score: 79.27  E-value: 1.08e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555   1 MTTVNSTSNVNNAQVGQATSNAAKSIQDQFLTLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGITNLNNTLLSISGQID 80
Cdd:PRK09618    3 MTGIDSSLWLANSKKAERRTGNQNLGKDDFLKLLITQLQNQDPTNPMEDKEFIAQMAQFSSLEQMTNMNKSMEKLVSSSD 82

                          90
                  ....*....|....*
gi 2049113555  81 vsQSMDAVSLIGKAV 95
Cdd:PRK09618   83 --GLTKYSELIGKEV 95
flgD PRK09619
flagellar hook assembly protein FlgD;
2-108 2.22e-18

flagellar hook assembly protein FlgD;


Pssm-ID: 181996 [Multi-domain]  Cd Length: 218  Bit Score: 80.21  E-value: 2.22e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555   2 TTVNSTSNVNNAQVGQATS-NAAKSIQDQFLTLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGITNLNNTLLSISGQID 80
Cdd:PRK09619    4 NESRNSANVGNQSPAPEGGlPGAEQLNNQFMTLLVAQIQNQDPLNPADGTEFVSQLAQLSQVQSTENMAKLMKSNTVLMD 83

                          90       100
                  ....*....|....*....|....*...
gi 2049113555  81 VSQSMDAVSLIGKAVLVPGNKISLGTDA 108
Cdd:PRK09619   84 NMQTLATANLVGQQVMVESHEITLGEDP 111
FlgD_ig pfam13860
FlgD Ig-like domain; This domains has an immunoglobulin like beta sandwich fold. It is found ...
 119-180 5.00e-16

FlgD Ig-like domain; This domains has an immunoglobulin like beta sandwich fold. It is found in the FlgD protein the flagellar hook capping protein. THe structure for this domain shows that it is inserted within a TUDOR like beta barrel domain.


Pssm-ID: 433532 [Multi-domain]  Cd Length: 78  Bit Score: 70.45  E-value: 5.00e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2049113555 119 LGYDVPSDAAKLTIKILDAAGNVVRTVEQTDVATGVYTYAWDGNNDSGGAVKDGAYTFQVTA 180
Cdd:pfam13860  14 VELTLPSPADSVTVTIYDAAGQLVRTIDLGAQSAGDVSFTWDGTDDDGNKLADGTYTFSVSA 75
flgD PRK06009
flagellar hook assembly protein FlgD;
2-95 1.25e-13

flagellar hook assembly protein FlgD;


Pssm-ID: 235670 [Multi-domain]  Cd Length: 140  Bit Score: 65.50  E-value: 1.25e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555   2 TTVNSTSNVNNAQVGQATSNAAKSIQDQFLTLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGITNLNNTLLSISGQIDV 81
Cdd:PRK06009   10 TSSSTTSSTSTASNSTSAANKASVNYDSFLQLLIAQMKNQDPTDPMDATQYVSQLATFSQVEQSIQTNSKLDTLLASSSL 89

                          90
                  ....*....|....
gi 2049113555  82 SQsmdAVSLIGKAV 95
Cdd:PRK06009   90 TQ---AEGLIGRTV 100
flgD PRK05842
flagellar hook assembly protein FlgD;
27-174 8.96e-11

flagellar hook assembly protein FlgD;


Pssm-ID: 235621 [Multi-domain]  Cd Length: 295  Bit Score: 60.39  E-value: 8.96e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555  27 QDQFLTLLVTQLKNQDPLNPMQNAELTSQLAQISTVE-------------------GITN---------LNNTLLSISGQ 78
Cdd:PRK05842   30 KNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEmqeenkktmqevasamksnKETNeslkdfqgaLKDTMENLNKG 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555  79 IDVS----------QSMDAVSLIGKAVLVPGNKISLGTDADdptrrTATPLGYDVPSDAAK--LTIKILDAAGNVVRTVE 146
Cdd:PRK05842  110 MDDSlkannalrevSALNSVSMIGKIAETDVSGANFDGNNK-----LSFSLFFDEKIDASKgvPAIQILNENNELVKTIP 184

                         170       180       190
                  ....*....|....*....|....*....|
gi 2049113555 147 QTDVA--TGVYTYAWDGNNDSGGAVKDGAY 174
Cdd:PRK05842  185 LKDYNgqKGYINFEWDGLNEKGEKVPKGNY 214
flgD PRK11911
flagellar basal body rod modification protein; Provisional
 1-95 2.55e-08

flagellar basal body rod modification protein; Provisional


Pssm-ID: 138812 [Multi-domain]  Cd Length: 140  Bit Score: 51.38  E-value: 2.55e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555   1 MTTVNSTSNVNNAQVGQATSNAAKSI-QDQFLTLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGITNLNNTLLSISGQI 79
Cdd:PRK11911    1 MDGISSLSGASQDTNNAVTSSVSKTLgKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQA 80

                          90
                  ....*....|....*.
gi 2049113555  80 DVSQSMDAVSLIGKAV 95
Cdd:PRK11911   81 QNSALQSAVNFIGKDI 96
flgD PRK06792
flagellar basal body rod modification protein; Validated
 3-103 4.78e-05

flagellar basal body rod modification protein; Validated


Pssm-ID: 180695 [Multi-domain]  Cd Length: 190  Bit Score: 42.69  E-value: 4.78e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2049113555   3 TVNSTSNVNNAQVGQATSNAAKSIQ-------DQFLTLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGITNLNNTLLSI 75
Cdd:PRK06792   22 TKNASVTGAQSTAQQANGVSASTQKtpgimdkDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKL 101

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2049113555  76 SGQIDVSQSMDAVSLIGKAVLVP---GNKIS 103
Cdd:PRK06792  102 QSTMYSTALDGGMKFLGKYVRGVsndGKQVT 132
COG3656 COG3656
Predicted periplasmic protein [Function unknown];
151-180 1.09e-03

Predicted periplasmic protein [Function unknown];


Pssm-ID: 442873  Cd Length: 161  Bit Score: 38.35  E-value: 1.09e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 2049113555 151 ATGVYTYAWDGNNDSGGAVKDGAYTFQVTA 180
Cdd:COG3656    91 PPGEHTLVWDGKDDAGNPLPPGKYTLVVEA 120
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH