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Conserved domains on  [gi|2053302023|gb|QWR45811|]
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hypothetical protein E1H30_07070 [Clostridioides difficile]

Protein Classification

DUF4097 family beta strand repeat-containing protein( domain architecture ID 1904289)

DUF4097 family beta strand repeat-containing protein may function as an adhesin

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4097 super family cl44625
Putative adhesin; This has a putative all-beta structure with a twenty-residue repeat with a ...
 55-173 8.21e-05

Putative adhesin; This has a putative all-beta structure with a twenty-residue repeat with a highly conserved repeating GD, gly-asp, motif. It may form part of a bacterial adhesin.


The actual alignment was detected with superfamily member pfam13349:

Pssm-ID: 433135 [Multi-domain]  Cd Length: 246  Bit Score: 43.47  E-value: 8.21e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2053302023  55 IDKLDIAVDNINVTIKKSSSEDVRVTTRGNNEfYKYNVTLKDKTLVVKGERKYEnkikkiknfdqllNTSINSMFSHDYR 134
Cdd:pfam13349   1 ITKIDINSESADVTIKESDRDQITVTYSGSKK-KKKDVKENGGTLTITGKDKNG-------------TSFGMGLSSFEKN 66

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2053302023 135 EIIIYVPNN--VDINASSISSHLFVYDNVASNTITYKTSYG 173
Cdd:pfam13349  67 EIIIYLPKDylDDLTVKTSSGDISVSDNLALKDVILSSNSG 107
 
Name Accession Description Interval E-value
DUF4097 pfam13349
Putative adhesin; This has a putative all-beta structure with a twenty-residue repeat with a ...
 55-173 8.21e-05

Putative adhesin; This has a putative all-beta structure with a twenty-residue repeat with a highly conserved repeating GD, gly-asp, motif. It may form part of a bacterial adhesin.


Pssm-ID: 433135 [Multi-domain]  Cd Length: 246  Bit Score: 43.47  E-value: 8.21e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2053302023  55 IDKLDIAVDNINVTIKKSSSEDVRVTTRGNNEfYKYNVTLKDKTLVVKGERKYEnkikkiknfdqllNTSINSMFSHDYR 134
Cdd:pfam13349   1 ITKIDINSESADVTIKESDRDQITVTYSGSKK-KKKDVKENGGTLTITGKDKNG-------------TSFGMGLSSFEKN 66

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2053302023 135 EIIIYVPNN--VDINASSISSHLFVYDNVASNTITYKTSYG 173
Cdd:pfam13349  67 EIIIYLPKDylDDLTVKTSSGDISVSDNLALKDVILSSNSG 107
 
Name Accession Description Interval E-value
DUF4097 pfam13349
Putative adhesin; This has a putative all-beta structure with a twenty-residue repeat with a ...
 55-173 8.21e-05

Putative adhesin; This has a putative all-beta structure with a twenty-residue repeat with a highly conserved repeating GD, gly-asp, motif. It may form part of a bacterial adhesin.


Pssm-ID: 433135 [Multi-domain]  Cd Length: 246  Bit Score: 43.47  E-value: 8.21e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2053302023  55 IDKLDIAVDNINVTIKKSSSEDVRVTTRGNNEfYKYNVTLKDKTLVVKGERKYEnkikkiknfdqllNTSINSMFSHDYR 134
Cdd:pfam13349   1 ITKIDINSESADVTIKESDRDQITVTYSGSKK-KKKDVKENGGTLTITGKDKNG-------------TSFGMGLSSFEKN 66

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2053302023 135 EIIIYVPNN--VDINASSISSHLFVYDNVASNTITYKTSYG 173
Cdd:pfam13349  67 EIIIYLPKDylDDLTVKTSSGDISVSDNLALKDVILSSNSG 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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