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Conserved domains on  [gi|1418666770|gb|RAY35144|]
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universal stress protein UspG [Enterobacter kobei]

Protein Classification

adenine nucleotide alpha hydrolase family protein( domain architecture ID 188)

AANH (adenine nucleotide alpha hydrolase) family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AANH_superfamily super family cl00292
Adenine nucleotide alpha hydrolase (AANH) superfamily; The adenine nucleotide alpha hydrolase ...
 1-143 1.22e-52

Adenine nucleotide alpha hydrolase (AANH) superfamily; The adenine nucleotide alpha hydrolase (AANH) superfamily includes N-type ATP PPases, ATP sulfurylases, universal stress response proteins (USPs), and electron transfer flavoproteins (ETFs). The domain forms an alpha/beta/alpha fold which binds to adenosine nucleotide.


The actual alignment was detected with superfamily member PRK15456:

Pssm-ID: 469708  Cd Length: 142  Bit Score: 163.19  E-value: 1.22e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418666770   1 MYKNILMPVDVFEMDLSDKAVRHAASLAKAEGAsITLVNILPASSRSLLRGFNADIKKFEEYMTAESAKKMNELKRLFDI 80
Cdd:PRK15456    1 MYKTIIMPVDVFEMELSDKAVRHAEFLAQDDGV-IHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTI 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1418666770  81 APENIHSMVRFGNVRDEIIKLSKEGKYDAIVIGSKNPSITTHLLGSNAESILRYATIPVLVVR 143
Cdd:PRK15456   80 DPSRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVLVVR 142
 
Name Accession Description Interval E-value
PRK15456 PRK15456
universal stress protein UspG; Provisional
 1-143 1.22e-52

universal stress protein UspG; Provisional


Pssm-ID: 185353  Cd Length: 142  Bit Score: 163.19  E-value: 1.22e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418666770   1 MYKNILMPVDVFEMDLSDKAVRHAASLAKAEGAsITLVNILPASSRSLLRGFNADIKKFEEYMTAESAKKMNELKRLFDI 80
Cdd:PRK15456    1 MYKTIIMPVDVFEMELSDKAVRHAEFLAQDDGV-IHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTI 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1418666770  81 APENIHSMVRFGNVRDEIIKLSKEGKYDAIVIGSKNPSITTHLLGSNAESILRYATIPVLVVR 143
Cdd:PRK15456   80 DPSRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVLVVR 142
UspA COG0589
Nucleotide-binding universal stress protein, UspA family [Signal transduction mechanisms];
1-142 4.13e-33

Nucleotide-binding universal stress protein, UspA family [Signal transduction mechanisms];


Pssm-ID: 440354  Cd Length: 136  Bit Score: 113.48  E-value: 4.13e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418666770   1 MYKNILMPVDvfEMDLSDKAVRHAASLAKAEGASITLVNILPASSrsllrGFNADIKKFEEYMTAESAKKMNELKRLFDI 80
Cdd:COG0589     1 MYKRILVPTD--GSEEAERALEYAAELAKALGAELHLLHVVDPPP-----SAAAGPEELEEELREEAEEALEEAAERLEE 73

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1418666770  81 APENIHSMVRFGNVRDEIIKLSKEGKYDAIVIGSK-NPSITTHLLGSNAESILRYATIPVLVV 142
Cdd:COG0589    74 AGVEVETVVREGDPAEAILEAAEELDADLIVMGSRgRSGLRRLLLGSVAERVLRHAPCPVLVV 136
USP-like cd00293
universal stress protein (USP) and similar proteins; The universal stress protein (USP) is a ...
 4-142 3.06e-27

universal stress protein (USP) and similar proteins; The universal stress protein (USP) is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. USP enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, although USP lacks ATP-binding activity.


Pssm-ID: 467483 [Multi-domain]  Cd Length: 135  Bit Score: 98.19  E-value: 3.06e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418666770   4 NILMPVDVFEmdLSDKAVRHAASLAKAEGASITLVNILPASSRSLLRGfnaDIKKFEEYMTAESAKKMNELKRLFDIAPE 83
Cdd:cd00293     1 KILVAVDGSE--ESERALEWALELAKRPGAELTLLHVVDPPPSSSLSG---GLEELADELKEEAEELLEEAKKLAEEAGV 75

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418666770  84 NIHSMVRFGNVRDEIIKLSKEGKYDAIVIGSKNPSITTH-LLGSNAESILRYATIPVLVV 142
Cdd:cd00293    76 EVETIVVEGDPAEAILEEAKELGADLIVMGSRGRSGLKRlLLGSVSEYVLRHAPCPVLVV 135
Usp pfam00582
Universal stress protein family; The universal stress protein UspA is a small cytoplasmic ...
 5-143 3.58e-25

Universal stress protein family; The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.


Pssm-ID: 425765 [Multi-domain]  Cd Length: 137  Bit Score: 93.24  E-value: 3.58e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418666770   5 ILMPVDvfEMDLSDKAVRHAASLAKAEGASITLVNILPASSRSLLRGFNADIKKFEEYMTAESAKKMNELKRLFDIAPEn 84
Cdd:pfam00582   1 ILVAVD--GSEESKRALEWAAELAKARGAELILLHVIDPPPSGAASLADESAEEEELELELAEAEALAAAAAAEAGGVK- 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418666770  85 IHSMVRFGNVRDEIIKLSKEGKYDAIVIGS-KNPSITTHLLGSNAESILRYATIPVLVVR 143
Cdd:pfam00582  78 VEVVVVVGDPAEEILEVAEEEDADLIVMGSrGRSGLSRLLLGSVAEYVLRHAPCPVLVVR 137
 
Name Accession Description Interval E-value
PRK15456 PRK15456
universal stress protein UspG; Provisional
 1-143 1.22e-52

universal stress protein UspG; Provisional


Pssm-ID: 185353  Cd Length: 142  Bit Score: 163.19  E-value: 1.22e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418666770   1 MYKNILMPVDVFEMDLSDKAVRHAASLAKAEGAsITLVNILPASSRSLLRGFNADIKKFEEYMTAESAKKMNELKRLFDI 80
Cdd:PRK15456    1 MYKTIIMPVDVFEMELSDKAVRHAEFLAQDDGV-IHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTI 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1418666770  81 APENIHSMVRFGNVRDEIIKLSKEGKYDAIVIGSKNPSITTHLLGSNAESILRYATIPVLVVR 143
Cdd:PRK15456   80 DPSRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVLVVR 142
UspA COG0589
Nucleotide-binding universal stress protein, UspA family [Signal transduction mechanisms];
1-142 4.13e-33

Nucleotide-binding universal stress protein, UspA family [Signal transduction mechanisms];


Pssm-ID: 440354  Cd Length: 136  Bit Score: 113.48  E-value: 4.13e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418666770   1 MYKNILMPVDvfEMDLSDKAVRHAASLAKAEGASITLVNILPASSrsllrGFNADIKKFEEYMTAESAKKMNELKRLFDI 80
Cdd:COG0589     1 MYKRILVPTD--GSEEAERALEYAAELAKALGAELHLLHVVDPPP-----SAAAGPEELEEELREEAEEALEEAAERLEE 73

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1418666770  81 APENIHSMVRFGNVRDEIIKLSKEGKYDAIVIGSK-NPSITTHLLGSNAESILRYATIPVLVV 142
Cdd:COG0589    74 AGVEVETVVREGDPAEAILEAAEELDADLIVMGSRgRSGLRRLLLGSVAERVLRHAPCPVLVV 136
USP-like cd00293
universal stress protein (USP) and similar proteins; The universal stress protein (USP) is a ...
 4-142 3.06e-27

universal stress protein (USP) and similar proteins; The universal stress protein (USP) is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. USP enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, although USP lacks ATP-binding activity.


Pssm-ID: 467483 [Multi-domain]  Cd Length: 135  Bit Score: 98.19  E-value: 3.06e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418666770   4 NILMPVDVFEmdLSDKAVRHAASLAKAEGASITLVNILPASSRSLLRGfnaDIKKFEEYMTAESAKKMNELKRLFDIAPE 83
Cdd:cd00293     1 KILVAVDGSE--ESERALEWALELAKRPGAELTLLHVVDPPPSSSLSG---GLEELADELKEEAEELLEEAKKLAEEAGV 75

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418666770  84 NIHSMVRFGNVRDEIIKLSKEGKYDAIVIGSKNPSITTH-LLGSNAESILRYATIPVLVV 142
Cdd:cd00293    76 EVETIVVEGDPAEAILEEAKELGADLIVMGSRGRSGLKRlLLGSVSEYVLRHAPCPVLVV 135
Usp pfam00582
Universal stress protein family; The universal stress protein UspA is a small cytoplasmic ...
 5-143 3.58e-25

Universal stress protein family; The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.


Pssm-ID: 425765 [Multi-domain]  Cd Length: 137  Bit Score: 93.24  E-value: 3.58e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418666770   5 ILMPVDvfEMDLSDKAVRHAASLAKAEGASITLVNILPASSRSLLRGFNADIKKFEEYMTAESAKKMNELKRLFDIAPEn 84
Cdd:pfam00582   1 ILVAVD--GSEESKRALEWAAELAKARGAELILLHVIDPPPSGAASLADESAEEEELELELAEAEALAAAAAAEAGGVK- 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418666770  85 IHSMVRFGNVRDEIIKLSKEGKYDAIVIGS-KNPSITTHLLGSNAESILRYATIPVLVVR 143
Cdd:pfam00582  78 VEVVVVVGDPAEEILEVAEEEDADLIVMGSrGRSGLSRLLLGSVAEYVLRHAPCPVLVVR 137
PRK15005 PRK15005
universal stress protein UspF;
1-143 9.23e-25

universal stress protein UspF;


Pssm-ID: 184967 [Multi-domain]  Cd Length: 144  Bit Score: 92.17  E-value: 9.23e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418666770   1 MYKNILMPVDVFEMDLSDKAVRHAASLAKAEGASITLVNILPASS--RSLLRGFNADIKKFEEyMTAESAKKMNELKRLF 78
Cdd:PRK15005    1 MNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPyyASLGLAYSAELPAMDD-LKAEAKSQLEEIIKKF 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1418666770  79 DIAPENIHSMVRFGNVRDEIIKLSKEGKYDAIVIGSKNPSITTHLLGSNAESILRYATIPVLVVR 143
Cdd:PRK15005   80 KLPTDRVHVHVEEGSPKDRILELAKKIPADMIIIASHRPDITTYLLGSNAAAVVRHAECSVLVVR 144
USP-A-like cd23657
universal stress protein A and similar proteins; The universal stress protein UspA is a small ...
 2-143 2.55e-11

universal stress protein A and similar proteins; The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced several-fold when cellular viability is challenged with heat shock, nutrient starvation, stress agents which arrest cell growth, or DNA-damaging agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, suggesting that it asserts a general "stress endurance" activity. In general, these proteins form dimers and have domains for nucleotide binding activity. The crystal structure of Haemophilus influenzae UspA reveals an asymmetric dimer with a tertiary alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, but unlike MJ0577, it lacks ATP-binding activity.


Pssm-ID: 467504  Cd Length: 138  Bit Score: 57.32  E-value: 2.55e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418666770   2 YKNILMPVDVFEMDLSdkAVRHAASLAKAEGASITLVNILPASSRSLLRGFNADIKKFEEYMTAESAKKMNELKRLFDIA 81
Cdd:cd23657     1 YKHILVAVDLSPESQS--LVDKAVEIARENDAKLSLIHVDEDISEYYTGLIDVDIAALQDLESTMLEEALKNLSELAGYP 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1418666770  82 PEniHSMVRFGNVRDEIIKLSKEGKYDAIVIGSKNPSITThLLGSNAESILRYATIPVLVVR 143
Cdd:cd23657    79 VD--HTFIGYGDLKEEILEVAKKHNVDLIVCGHHGDFGLS-LLGSSARAVLNSAPCDVLIVP 137
USP_At3g01520-like cd23659
universal stress protein At3g01520 and similar proteins; This subfamily includes plant and ...
 3-143 1.35e-08

universal stress protein At3g01520 and similar proteins; This subfamily includes plant and fungal proteins of unknown function, including Arabidopsis thaliana At3g01520. A. thaliana contains 44 USP domain-containing proteins; the USP domain is found either in a small protein with unknown physiological function or as an N-terminal portion of a multi-domain protein, usually a protein kinase. The gene At3g01520 of Arabidopsis thaliana encodes a 175-residue universal stress protein (USP)-like protein which is widely found in the genomes of bacteria, as well as fungi, protozoa, and plants. The bound AMP and conservation of residues in the ATP-binding loop suggest that the protein At3g01520 belongs to the ATP-binding USP subfamily. Universal stress proteins (USPs) are small cytoplasmic bacterial proteins whose expression is enhanced when the cell is exposed to stress agents. USP enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.


Pssm-ID: 467505  Cd Length: 143  Bit Score: 50.31  E-value: 1.35e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418666770   3 KNILMPVDvfEMDLSDKAVRHAASLAKAEGASITLVNILPASSRS--LLRGFNADIKKFEEYMTAESAKKMNELKRLFDI 80
Cdd:cd23659     1 RKVLIAVD--GSEESEYALEWALENLHRPGDEVVLLHVIEPPSLPaaSLGSGSEEWEALEEEAREKAEKLLEKYEKKLKE 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1418666770  81 ApENIHSMVRF--GNVRDEIIKLSKEGKYDAIVIGSKNPS-ITTHLLGSNAESILRYATIPVLVVR 143
Cdd:cd23659    79 E-KGIKVKVEVvaGDPGEVICKAAEELKADLIVMGSRGLGaLKRTLLGSVSDYVVHHSPCPVLVVR 143
USP_Rv2623_repeat1 cd23944
universal stress protein Rv2623 and similar proteins, USP repeat 1; Mycobacterium tuberculosis ...
 17-143 6.77e-07

universal stress protein Rv2623 and similar proteins, USP repeat 1; Mycobacterium tuberculosis universal stress protein Rv2623 regulates mycobacterial growth in vitro and in vivo and is required for the entry of the tubercle bacillus into the chronic phase of infection in the host. In addition Rv2623 binds ATP and the growth-regulatory attribute of this USP is dependent on its ATP-binding activity. Rv2623 is thought to function as an ATP-dependent signaling intermediate in a pathway that promotes persistent infection. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, although Usp lacks ATP-binding activity.


Pssm-ID: 467509  Cd Length: 140  Bit Score: 45.47  E-value: 6.77e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418666770  17 SDKAVRHAASLAKAEGASITLVNILPASSRSLLRG-FNADIKkfeEYMTAESAKKMNE-LKRLFDIAPEN----IHSMVR 90
Cdd:cd23944    12 SDAAVRWAAREAQLRQIPLTLVHVVPPVVVSWPEGpRPAEVL---DWQQDEARQVIEQaRKVAEEASGEGppvkVETEIV 88

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1418666770  91 FGNVRDEIIKLSKEGKYdaIVIGSKNP-SITTHLLGSNAESILRYATIPVLVVR 143
Cdd:cd23944    89 PGSPVPTLVEASRDATM--VVVGSRGIgALAGLLLGSVSTSLVRHAHCPVAVIH 140
USP-E_repeat2 cd23660
Universal stress protein E, repeat 2; UspE is a tandem-type USP that consists of two USP ...
 15-132 4.21e-05

Universal stress protein E, repeat 2; UspE is a tandem-type USP that consists of two USP domains. The UspE expression levels of Escherichia coli become elevated in response to oxidative stress and DNA damaging agents, including exposure to mitomycin C, cadmium, and hydrogen peroxide. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.


Pssm-ID: 467506  Cd Length: 148  Bit Score: 40.72  E-value: 4.21e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1418666770  15 DLSDKAVRHAASLAKAEGASITLVNILPASSRSLLRgfnaDIKKF--EEYMTAESAKKMNELKRL---FDIAPENIHsmV 89
Cdd:cd23660    19 DLNLRLIELAYSLAAQLKAELHLVSAWPVTPENIAI----ELPEFdpTEYVDAIRGRHLEAMKALrqkFGIDEEQTH--V 92

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1418666770  90 RFGNVRDEIIKLSKEGKYDAIVIGSKNPS-ITTHLLGSNAESIL 132
Cdd:cd23660    93 LEGLPEEVIPDFAEELDADIVVLGTVARTgLSGALIGNTAEHVL 136
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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