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Conserved domains on  [gi|1418711440|gb|RAY77874|]
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hypothetical protein DP199_00775 [Enterobacter kobei]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ClfA super family cl34840
Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing ...
 12-62 4.40e-03

Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold [Cell wall/membrane/envelope biogenesis];


The actual alignment was detected with superfamily member COG4932:

Pssm-ID: 443959 [Multi-domain]  Cd Length: 689  Bit Score: 36.49  E-value: 4.40e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1418711440  12 TLSLLDSDGS-IVDTWTAYNNVDRRATFKHISNGTYQIQDKSKPHSHPGDSE 62
Cdd:COG4932   281 TFTLTDADGNtVVTTTVTVTDADGSYTFTDLPPGTYTVTETKAPAGYDLDGE 332
 
Name Accession Description Interval E-value
ClfA COG4932
Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing ...
 12-62 4.40e-03

Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443959 [Multi-domain]  Cd Length: 689  Bit Score: 36.49  E-value: 4.40e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1418711440  12 TLSLLDSDGS-IVDTWTAYNNVDRRATFKHISNGTYQIQDKSKPHSHPGDSE 62
Cdd:COG4932   281 TFTLTDADGNtVVTTTVTVTDADGSYTFTDLPPGTYTVTETKAPAGYDLDGE 332
 
Name Accession Description Interval E-value
ClfA COG4932
Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing ...
 12-62 4.40e-03

Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443959 [Multi-domain]  Cd Length: 689  Bit Score: 36.49  E-value: 4.40e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1418711440  12 TLSLLDSDGS-IVDTWTAYNNVDRRATFKHISNGTYQIQDKSKPHSHPGDSE 62
Cdd:COG4932   281 TFTLTDADGNtVVTTTVTVTDADGSYTFTDLPPGTYTVTETKAPAGYDLDGE 332
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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