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Conserved domains on  [gi|1420621996|gb|RBK58904|]
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twin-arginine translocase subunit TatB [Xanthomonas oryzae pv. oryzae]

Protein Classification

PRK04654 family protein( domain architecture ID 11480294)

PRK04654 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK04654 PRK04654
sec-independent translocase; Provisional
 1-213 2.30e-107

sec-independent translocase; Provisional


:

Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 307.51  E-value: 2.30e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1420621996   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQASLREAEDQLRNK 80
Cdd:PRK04654    1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQASLREAEDQLRNT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1420621996  81 QQQVEQGARALHDDVSRDIDIRSSATPVATPLELAHADLSASAHVDAAAGAAA-GAGPAPAPAPAAPVIAQAQPIAPAPH 159
Cdd:PRK04654   81 QQQVEQGARALHDDVSRDIDIRTSATPVATPLELAHADLSASAQVDAAAGAEPgAGQAHTPVPAPAPVIAQAQPIAPAPH 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1420621996 160 QTLVPAPHDTIVPAPHAAHLTSAPAPPVTVAPVDAGTSASPTPSEPTKIQEKQP 213
Cdd:PRK04654  161 QTLVPAPHDTIVPAPHAAHLPSAPATPVSVAPVDAGTSASPTPSEPTKIQEKQP 214
 
Name Accession Description Interval E-value
PRK04654 PRK04654
sec-independent translocase; Provisional
 1-213 2.30e-107

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 307.51  E-value: 2.30e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1420621996   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQASLREAEDQLRNK 80
Cdd:PRK04654    1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQASLREAEDQLRNT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1420621996  81 QQQVEQGARALHDDVSRDIDIRSSATPVATPLELAHADLSASAHVDAAAGAAA-GAGPAPAPAPAAPVIAQAQPIAPAPH 159
Cdd:PRK04654   81 QQQVEQGARALHDDVSRDIDIRTSATPVATPLELAHADLSASAQVDAAAGAEPgAGQAHTPVPAPAPVIAQAQPIAPAPH 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1420621996 160 QTLVPAPHDTIVPAPHAAHLTSAPAPPVTVAPVDAGTSASPTPSEPTKIQEKQP 213
Cdd:PRK04654  161 QTLVPAPHDTIVPAPHAAHLPSAPATPVSVAPVDAGTSASPTPSEPTKIQEKQP 214
tatB TIGR01410
twin arginine-targeting protein translocase TatB; This model represents the TatB protein of a ...
 2-68 3.28e-19

twin arginine-targeting protein translocase TatB; This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 130477 [Multi-domain]  Cd Length: 80  Bit Score: 78.13  E-value: 3.28e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1420621996   2 FDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQA 68
Cdd:TIGR01410   1 FDIGFSELLLIAVVALVVLGPERLPVAIRTVGGFVRALRGMASDVKNELDEELKLQELDDQLKKAQQ 67
TatA COG1826
Twin-arginine protein secretion pathway components TatA and TatB [Intracellular trafficking, ...
 1-90 3.17e-16

Twin-arginine protein secretion pathway components TatA and TatB [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441431 [Multi-domain]  Cd Length: 72  Bit Score: 70.35  E-value: 3.17e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1420621996   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARmqwdsvkqelereleaeelkRSLQDVQASLREA--EDQLR 78
Cdd:COG1826     1 MFGIGFWELLIILVVALLVFGPKKLPELARSLGKAIREFK--------------------KAANEVKEELDEElkEEELR 60

                          90
                  ....*....|..
gi 1420621996  79 NKQQQVEQGARA 90
Cdd:COG1826    61 KSEKEAEELKKA 72
TatA_B_E pfam02416
mttA/Hcf106 family; Members of this protein family are involved in a sec independent ...
 4-33 1.79e-05

mttA/Hcf106 family; Members of this protein family are involved in a sec independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts. Members of this family in E.coli are involved in export of redox proteins with a "twin arginine" leader motif.


Pssm-ID: 426762  Cd Length: 53  Bit Score: 40.75  E-value: 1.79e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 1420621996   4 IGVGELTLIAVVALVVLGPERLPKAARFAG 33
Cdd:pfam02416   1 LGIPELLIILVVALLLFGPKKLPELGRALG 30
 
Name Accession Description Interval E-value
PRK04654 PRK04654
sec-independent translocase; Provisional
 1-213 2.30e-107

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 307.51  E-value: 2.30e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1420621996   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQASLREAEDQLRNK 80
Cdd:PRK04654    1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQASLREAEDQLRNT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1420621996  81 QQQVEQGARALHDDVSRDIDIRSSATPVATPLELAHADLSASAHVDAAAGAAA-GAGPAPAPAPAAPVIAQAQPIAPAPH 159
Cdd:PRK04654   81 QQQVEQGARALHDDVSRDIDIRTSATPVATPLELAHADLSASAQVDAAAGAEPgAGQAHTPVPAPAPVIAQAQPIAPAPH 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1420621996 160 QTLVPAPHDTIVPAPHAAHLTSAPAPPVTVAPVDAGTSASPTPSEPTKIQEKQP 213
Cdd:PRK04654  161 QTLVPAPHDTIVPAPHAAHLPSAPATPVSVAPVDAGTSASPTPSEPTKIQEKQP 214
tatB TIGR01410
twin arginine-targeting protein translocase TatB; This model represents the TatB protein of a ...
 2-68 3.28e-19

twin arginine-targeting protein translocase TatB; This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 130477 [Multi-domain]  Cd Length: 80  Bit Score: 78.13  E-value: 3.28e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1420621996   2 FDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQA 68
Cdd:TIGR01410   1 FDIGFSELLLIAVVALVVLGPERLPVAIRTVGGFVRALRGMASDVKNELDEELKLQELDDQLKKAQQ 67
TatA COG1826
Twin-arginine protein secretion pathway components TatA and TatB [Intracellular trafficking, ...
 1-90 3.17e-16

Twin-arginine protein secretion pathway components TatA and TatB [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441431 [Multi-domain]  Cd Length: 72  Bit Score: 70.35  E-value: 3.17e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1420621996   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARmqwdsvkqelereleaeelkRSLQDVQASLREA--EDQLR 78
Cdd:COG1826     1 MFGIGFWELLIILVVALLVFGPKKLPELARSLGKAIREFK--------------------KAANEVKEELDEElkEEELR 60

                          90
                  ....*....|..
gi 1420621996  79 NKQQQVEQGARA 90
Cdd:COG1826    61 KSEKEAEELKKA 72
PRK01371 PRK01371
Sec-independent protein translocase protein TatB;
1-40 1.04e-08

Sec-independent protein translocase protein TatB;


Pssm-ID: 179287 [Multi-domain]  Cd Length: 137  Bit Score: 52.02  E-value: 1.04e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1420621996   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRAR 40
Cdd:PRK01371    1 MFGIGPGELVVLVVLAVLVFGPDKLPKAARDAGRTLRQLR 40
tatA PRK14861
twin arginine translocase protein A; Provisional
 1-33 3.35e-06

twin arginine translocase protein A; Provisional


Pssm-ID: 237837  Cd Length: 61  Bit Score: 43.03  E-value: 3.35e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1420621996   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAG 33
Cdd:PRK14861    2 FSNIGFPGLILILVVALIIFGPKKLPELGKALG 34
tatA PRK14858
twin arginine translocase protein A; Provisional
 1-76 3.47e-06

twin arginine translocase protein A; Provisional


Pssm-ID: 184860  Cd Length: 108  Bit Score: 44.47  E-value: 3.47e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1420621996   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQASLREAEDQ 76
Cdd:PRK14858    1 MFGIGMPELIVILVIALIVIGPQKLPDLARSLGRGLAEFKKATDDFKQSMQEESRTAEEKEKAEKLAETKKEAEAP 76
TatA_B_E pfam02416
mttA/Hcf106 family; Members of this protein family are involved in a sec independent ...
 4-33 1.79e-05

mttA/Hcf106 family; Members of this protein family are involved in a sec independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts. Members of this family in E.coli are involved in export of redox proteins with a "twin arginine" leader motif.


Pssm-ID: 426762  Cd Length: 53  Bit Score: 40.75  E-value: 1.79e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 1420621996   4 IGVGELTLIAVVALVVLGPERLPKAARFAG 33
Cdd:pfam02416   1 LGIPELLIILVVALLLFGPKKLPELGRALG 30
tatA PRK14857
TatA/E family twin arginine-targeting protein translocase;
2-33 7.49e-05

TatA/E family twin arginine-targeting protein translocase;


Pssm-ID: 184859  Cd Length: 90  Bit Score: 40.09  E-value: 7.49e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1420621996   2 FDIGVGELTLIAVVALVVLGPERLPKAARFAG 33
Cdd:PRK14857    4 FGIGLPEMAVILVIALLVFGPKKLPEIGRSLG 35
tatB PRK00182
Sec-independent protein translocase subunit TatB;
1-39 1.02e-03

Sec-independent protein translocase subunit TatB;


Pssm-ID: 234681  Cd Length: 160  Bit Score: 38.27  E-value: 1.02e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1420621996   1 MF-DIGVGELTLIAVVALVVLGPERLP---KAARFAGLWVRRA 39
Cdd:PRK00182    1 MFsSVGWGEILLLLIVGLIVIGPERLPrliEDVRAALLAARTA 43
tatA PRK14860
twin arginine translocase protein A; Provisional
 1-37 1.72e-03

twin arginine translocase protein A; Provisional


Pssm-ID: 184862  Cd Length: 64  Bit Score: 35.87  E-value: 1.72e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1420621996   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVR 37
Cdd:PRK14860    1 MFGFGMPELIVILVIALVVFGPAKLPQLGQALGGAIR 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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