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Conserved domains on  [gi|1425303566|gb|RBR47936|]
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hypothetical protein EB29_02757 [Enterococcus faecalis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PcfK super family cl16577
PcfK-like protein; The PcfK-like protein family includes the Enterococcus faecalis PcfK ...
 148-222 2.05e-06

PcfK-like protein; The PcfK-like protein family includes the Enterococcus faecalis PcfK protein, which is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 137 and 257 amino acids in length. There are two completely conserved residues (D and L) that may be functionally important.


The actual alignment was detected with superfamily member pfam14058:

Pssm-ID: 464076  Cd Length: 139  Bit Score: 45.97  E-value: 2.05e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1425303566 148 DSRLEAIHNWLCQ--QTDKDLLTGILKEDRTLKGAEAYCIQKAYEirnGNGAMASHITVFNWVREYYMLDELPTDKP 222
Cdd:pfam14058   4 DHFKDTIAEYLETraETDPLFAAKVLKPRKTIEECVTYILNKVQK---SGCNGFADDEIYSWAVHYFDEDDIEVGKP 77
 
Name Accession Description Interval E-value
PcfK pfam14058
PcfK-like protein; The PcfK-like protein family includes the Enterococcus faecalis PcfK ...
 148-222 2.05e-06

PcfK-like protein; The PcfK-like protein family includes the Enterococcus faecalis PcfK protein, which is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 137 and 257 amino acids in length. There are two completely conserved residues (D and L) that may be functionally important.


Pssm-ID: 464076  Cd Length: 139  Bit Score: 45.97  E-value: 2.05e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1425303566 148 DSRLEAIHNWLCQ--QTDKDLLTGILKEDRTLKGAEAYCIQKAYEirnGNGAMASHITVFNWVREYYMLDELPTDKP 222
Cdd:pfam14058   4 DHFKDTIAEYLETraETDPLFAAKVLKPRKTIEECVTYILNKVQK---SGCNGFADDEIYSWAVHYFDEDDIEVGKP 77
 
Name Accession Description Interval E-value
PcfK pfam14058
PcfK-like protein; The PcfK-like protein family includes the Enterococcus faecalis PcfK ...
 148-222 2.05e-06

PcfK-like protein; The PcfK-like protein family includes the Enterococcus faecalis PcfK protein, which is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 137 and 257 amino acids in length. There are two completely conserved residues (D and L) that may be functionally important.


Pssm-ID: 464076  Cd Length: 139  Bit Score: 45.97  E-value: 2.05e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1425303566 148 DSRLEAIHNWLCQ--QTDKDLLTGILKEDRTLKGAEAYCIQKAYEirnGNGAMASHITVFNWVREYYMLDELPTDKP 222
Cdd:pfam14058   4 DHFKDTIAEYLETraETDPLFAAKVLKPRKTIEECVTYILNKVQK---SGCNGFADDEIYSWAVHYFDEDDIEVGKP 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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