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Conserved domains on  [gi|1425738723|gb|RBV50929|]
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type III secretion protein [Escherichia coli]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SPAN super family cl19597
Surface presentation of antigens protein; Surface presentation of antigens protein (SPAN), ...
 207-280 2.31e-09

Surface presentation of antigens protein; Surface presentation of antigens protein (SPAN), also know as invasion protein invJ, is a Salmonella secretory pathway protein involved in presentation of determinants required for mammalian host cell invasion.


The actual alignment was detected with superfamily member pfam02510:

Pssm-ID: 302938  Cd Length: 336  Bit Score: 57.55  E-value: 2.31e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1425738723 207 ENELTYQFQRWGQNHTVRILESSEG-IRLKPSDTIVSDRLHEAQHNDvTAQRWVLTeQDERQGQRHQPHDEQENE 280
Cdd:pfam02510 260 DSSLTYRFQRWGNDYSVNIQARQAGeFSLIPSNTQVEHRLHDQWQNG-NPQRWHLT-RDDQQNPQQQQHRQQSGE 332
 
Name Accession Description Interval E-value
SPAN pfam02510
Surface presentation of antigens protein; Surface presentation of antigens protein (SPAN), ...
 207-280 2.31e-09

Surface presentation of antigens protein; Surface presentation of antigens protein (SPAN), also know as invasion protein invJ, is a Salmonella secretory pathway protein involved in presentation of determinants required for mammalian host cell invasion.


Pssm-ID: 280643  Cd Length: 336  Bit Score: 57.55  E-value: 2.31e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1425738723 207 ENELTYQFQRWGQNHTVRILESSEG-IRLKPSDTIVSDRLHEAQHNDvTAQRWVLTeQDERQGQRHQPHDEQENE 280
Cdd:pfam02510 260 DSSLTYRFQRWGNDYSVNIQARQAGeFSLIPSNTQVEHRLHDQWQNG-NPQRWHLT-RDDQQNPQQQQHRQQSGE 332
PRK15334 PRK15334
type III secretion system protein SpaN;
207-280 7.99e-07

type III secretion system protein SpaN;


Pssm-ID: 185234 [Multi-domain]  Cd Length: 336  Bit Score: 49.79  E-value: 7.99e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1425738723 207 ENELTYQFQRWGQNHTVRILESSEG-IRLKPSDTIVSDRLHEAQHNDvTAQRWVLTeQDERQGQRHQPHDEQENE 280
Cdd:PRK15334  260 DSSLTYRFQRWGNDYSVNIQARQAGeFSLIPSNTQVEHRLHDQWQNG-NPQRWHLT-RDDQQNPQQQQHRQQSGE 332
 
Name Accession Description Interval E-value
SPAN pfam02510
Surface presentation of antigens protein; Surface presentation of antigens protein (SPAN), ...
 207-280 2.31e-09

Surface presentation of antigens protein; Surface presentation of antigens protein (SPAN), also know as invasion protein invJ, is a Salmonella secretory pathway protein involved in presentation of determinants required for mammalian host cell invasion.


Pssm-ID: 280643  Cd Length: 336  Bit Score: 57.55  E-value: 2.31e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1425738723 207 ENELTYQFQRWGQNHTVRILESSEG-IRLKPSDTIVSDRLHEAQHNDvTAQRWVLTeQDERQGQRHQPHDEQENE 280
Cdd:pfam02510 260 DSSLTYRFQRWGNDYSVNIQARQAGeFSLIPSNTQVEHRLHDQWQNG-NPQRWHLT-RDDQQNPQQQQHRQQSGE 332
PRK15334 PRK15334
type III secretion system protein SpaN;
207-280 7.99e-07

type III secretion system protein SpaN;


Pssm-ID: 185234 [Multi-domain]  Cd Length: 336  Bit Score: 49.79  E-value: 7.99e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1425738723 207 ENELTYQFQRWGQNHTVRILESSEG-IRLKPSDTIVSDRLHEAQHNDvTAQRWVLTeQDERQGQRHQPHDEQENE 280
Cdd:PRK15334  260 DSSLTYRFQRWGNDYSVNIQARQAGeFSLIPSNTQVEHRLHDQWQNG-NPQRWHLT-RDDQQNPQQQQHRQQSGE 332
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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