|
Name |
Accession |
Description |
Interval |
E-value |
| PRK08158 |
PRK08158 |
YscQ/HrcQ family type III secretion apparatus protein; |
1-315 |
0e+00 |
|
YscQ/HrcQ family type III secretion apparatus protein;
Pssm-ID: 181259 [Multi-domain] Cd Length: 303 Bit Score: 526.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 1 MFGLRKVNGNTHSFETTFQNWKEKGEDVALLMPEFSAKWLPIAEESGSWSGWVLLRELFPLISAELAGMALMPETERLIV 80
Cdd:PRK08158 2 SLRVRQIDRREWLLAQTATEWQRHGQDVTLEYPTRQGMWLRLADAEGSWSGWIQPGDWLEHVSPELAGAAVSAGAEHLVV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 81 EWLSLSSTPLNLKYPELKYNRLCVGKVFDGVLSPAQPLIRIWTGELNIWldkvtvcqYENAPTLD------KKSLYWPIH 154
Cdd:PRK08158 82 EWLAATERPLELPVPHLSCRRLCVGNPVPGSALPEGPLLRIMTDRGGLW--------FENAPELPavgggrPKMLRWPLR 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 155 FVIGFSKTCYRTIVDIEVGDVLLISNNFAYAVIYNTKIcdliypeelkmvDHFEY-EEDFETDDFDIKKSESEINDENDY 233
Cdd:PRK08158 154 FVIGSSDTQRSLLGRIGIGDVLLISTSRAEVYCYAKKI------------GHFNRvEEGIIVETLDIQHIEEENNTTETA 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 234 QQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGVEIHSWLSGNNN 313
Cdd:PRK08158 222 ETLPGLNQLPVKLEFVLYRKNVTLAELEELCQQQLLSLPTNAELNVEIRANGALLGNGELVQMDDTLGVEIHEWLSGSGN 301
|
..
gi 1425738724 314 VK 315
Cdd:PRK08158 302 VE 303
|
|
| SpaO_YscQ |
TIGR02551 |
type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type ... |
28-307 |
5.28e-73 |
|
type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type III secretion operons. The gene (YscQ) in Yersinia is essential for YOPs secretion, while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid, and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274196 [Multi-domain] Cd Length: 298 Bit Score: 226.91 E-value: 5.28e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 28 VALLMPEFSAKWLPIAEESGSWSGWVLLRELFPLISAELA---------------GMALMPETERLIVEWLSLSSTPLNL 92
Cdd:TIGR02551 1 ALAELPVSSGVWLALALAGQTLSLWLRGAELQLWLAPALAtaafaslplelllalLLAALAPAGLLLTELVALGESPASL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 93 KYPELKYNRLCVGKVFDGVLSPAQPLIRIWTGELNIWLDKVTVCQYENAPTLDKKSLYWPIHFVIGFSKTCYRTIVDIEV 172
Cdd:TIGR02551 81 PAPQLSPLALRLGLTLEGLDGPEPVLLLATLALWLTWVAAALLAALPARPTVLLKALPLPVRLEIGSSRLALDELRSLEV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 173 GDVLLISNNFAYAV-IYNTKICDLIYPEELKMVDHFEYEEDFETDDFDIKK----SESEINDENDYQqiNSFEDLPVKIE 247
Cdd:TIGR02551 161 GDVLLLDNPSAARAgLGALLLWGPPWARVLLADDRLELIDGITADNLDLSDltdtESPDEPAAPTPE--VDLDQLPVTLE 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 248 FVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGVEIHSW 307
Cdd:TIGR02551 239 FELGRLTLTLAELAALQPGSVLELNVPVDGPVRLRANGRLLGRGELVDVGGRLGVRILEL 298
|
|
| FliN |
COG1886 |
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ... |
214-309 |
8.75e-18 |
|
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 441490 [Multi-domain] Cd Length: 172 Bit Score: 79.28 E-value: 8.75e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 214 ETDDFDIKKSESEINDENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGEL 293
Cdd:COG1886 77 DEEPAEFEPLEDAPEAEEEPENLDLLLDVPVEVTVELGRTRLTLRELLKLGPGSVIELDRLAGEPVDILVNGRLIARGEV 156
|
90
....*....|....*.
gi 1425738724 294 VEVDDKLGVEIHSWLS 309
Cdd:COG1886 157 VVVDDRFGVRITEIVS 172
|
|
| FliMN_C |
pfam01052 |
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ... |
244-309 |
5.26e-08 |
|
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.
Pssm-ID: 460043 [Multi-domain] Cd Length: 66 Bit Score: 48.87 E-value: 5.26e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1425738724 244 VKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGVEIHSWLS 309
Cdd:pfam01052 1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGGNLAVRITEIID 66
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK08158 |
PRK08158 |
YscQ/HrcQ family type III secretion apparatus protein; |
1-315 |
0e+00 |
|
YscQ/HrcQ family type III secretion apparatus protein;
Pssm-ID: 181259 [Multi-domain] Cd Length: 303 Bit Score: 526.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 1 MFGLRKVNGNTHSFETTFQNWKEKGEDVALLMPEFSAKWLPIAEESGSWSGWVLLRELFPLISAELAGMALMPETERLIV 80
Cdd:PRK08158 2 SLRVRQIDRREWLLAQTATEWQRHGQDVTLEYPTRQGMWLRLADAEGSWSGWIQPGDWLEHVSPELAGAAVSAGAEHLVV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 81 EWLSLSSTPLNLKYPELKYNRLCVGKVFDGVLSPAQPLIRIWTGELNIWldkvtvcqYENAPTLD------KKSLYWPIH 154
Cdd:PRK08158 82 EWLAATERPLELPVPHLSCRRLCVGNPVPGSALPEGPLLRIMTDRGGLW--------FENAPELPavgggrPKMLRWPLR 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 155 FVIGFSKTCYRTIVDIEVGDVLLISNNFAYAVIYNTKIcdliypeelkmvDHFEY-EEDFETDDFDIKKSESEINDENDY 233
Cdd:PRK08158 154 FVIGSSDTQRSLLGRIGIGDVLLISTSRAEVYCYAKKI------------GHFNRvEEGIIVETLDIQHIEEENNTTETA 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 234 QQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGVEIHSWLSGNNN 313
Cdd:PRK08158 222 ETLPGLNQLPVKLEFVLYRKNVTLAELEELCQQQLLSLPTNAELNVEIRANGALLGNGELVQMDDTLGVEIHEWLSGSGN 301
|
..
gi 1425738724 314 VK 315
Cdd:PRK08158 302 VE 303
|
|
| SpaO_YscQ |
TIGR02551 |
type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type ... |
28-307 |
5.28e-73 |
|
type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type III secretion operons. The gene (YscQ) in Yersinia is essential for YOPs secretion, while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid, and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274196 [Multi-domain] Cd Length: 298 Bit Score: 226.91 E-value: 5.28e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 28 VALLMPEFSAKWLPIAEESGSWSGWVLLRELFPLISAELA---------------GMALMPETERLIVEWLSLSSTPLNL 92
Cdd:TIGR02551 1 ALAELPVSSGVWLALALAGQTLSLWLRGAELQLWLAPALAtaafaslplelllalLLAALAPAGLLLTELVALGESPASL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 93 KYPELKYNRLCVGKVFDGVLSPAQPLIRIWTGELNIWLDKVTVCQYENAPTLDKKSLYWPIHFVIGFSKTCYRTIVDIEV 172
Cdd:TIGR02551 81 PAPQLSPLALRLGLTLEGLDGPEPVLLLATLALWLTWVAAALLAALPARPTVLLKALPLPVRLEIGSSRLALDELRSLEV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 173 GDVLLISNNFAYAV-IYNTKICDLIYPEELKMVDHFEYEEDFETDDFDIKK----SESEINDENDYQqiNSFEDLPVKIE 247
Cdd:TIGR02551 161 GDVLLLDNPSAARAgLGALLLWGPPWARVLLADDRLELIDGITADNLDLSDltdtESPDEPAAPTPE--VDLDQLPVTLE 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 248 FVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGVEIHSW 307
Cdd:TIGR02551 239 FELGRLTLTLAELAALQPGSVLELNVPVDGPVRLRANGRLLGRGELVDVGGRLGVRILEL 298
|
|
| FliN |
COG1886 |
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ... |
214-309 |
8.75e-18 |
|
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 441490 [Multi-domain] Cd Length: 172 Bit Score: 79.28 E-value: 8.75e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 214 ETDDFDIKKSESEINDENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGEL 293
Cdd:COG1886 77 DEEPAEFEPLEDAPEAEEEPENLDLLLDVPVEVTVELGRTRLTLRELLKLGPGSVIELDRLAGEPVDILVNGRLIARGEV 156
|
90
....*....|....*.
gi 1425738724 294 VEVDDKLGVEIHSWLS 309
Cdd:COG1886 157 VVVDDRFGVRITEIVS 172
|
|
| PRK06782 |
PRK06782 |
flagellar motor switch protein; Reviewed |
170-304 |
1.88e-10 |
|
flagellar motor switch protein; Reviewed
Pssm-ID: 235861 [Multi-domain] Cd Length: 528 Bit Score: 61.39 E-value: 1.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 170 IEVGDVLLISNNFAYAVIYNTKICDLIYPEELK-MVDHFEYEEDFETDDFDIKKSESEI---------------NDENDY 233
Cdd:PRK06782 374 IEVDELVQITFNLEVGDLLQTKMYQILPISEAKeMVRLLLYPMVKEEEEIATEEIEPEKvvepvvqpiefkevkQMEPVY 453
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1425738724 234 QQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGVEI 304
Cdd:PRK06782 454 MDTSILQDVPMNVKVVFGSTKKTIQDILSLQENEVVVLDEDIDEPIRIYVNGVLVAYGELVNVDGFFGVKV 524
|
|
| fliN |
TIGR02480 |
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ... |
236-304 |
8.36e-09 |
|
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 131533 [Multi-domain] Cd Length: 77 Bit Score: 51.44 E-value: 8.36e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1425738724 236 INSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGVEI 304
Cdd:TIGR02480 2 IDLILDIPVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVEDKFGIRI 70
|
|
| FliMN_C |
pfam01052 |
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ... |
244-309 |
5.26e-08 |
|
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.
Pssm-ID: 460043 [Multi-domain] Cd Length: 66 Bit Score: 48.87 E-value: 5.26e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1425738724 244 VKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGVEIHSWLS 309
Cdd:pfam01052 1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGGNLAVRITEIID 66
|
|
| PRK06933 |
PRK06933 |
YscQ/HrcQ family type III secretion apparatus protein; |
224-304 |
2.62e-07 |
|
YscQ/HrcQ family type III secretion apparatus protein;
Pssm-ID: 235891 [Multi-domain] Cd Length: 308 Bit Score: 51.28 E-value: 2.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 224 ESEINDENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGVE 303
Cdd:PRK06933 219 HTESNDLNPEPLLTDLNQLPVQVSFEVGRQTLDLHTLTSLQPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVR 298
|
.
gi 1425738724 304 I 304
Cdd:PRK06933 299 V 299
|
|
| PRK08916 |
PRK08916 |
flagellar motor switch protein FliN; |
241-302 |
8.60e-07 |
|
flagellar motor switch protein FliN;
Pssm-ID: 236350 [Multi-domain] Cd Length: 116 Bit Score: 47.05 E-value: 8.60e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1425738724 241 DLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGV 302
Cdd:PRK08916 44 DVPVQVSAVLGRSKMDVGQLLKLGPGSVLELDRKVGEAIDIYVNNRLVARGEVVLVEDRLGV 105
|
|
| fliN |
PRK07963 |
flagellar motor switch protein FliN; Validated |
234-304 |
4.12e-06 |
|
flagellar motor switch protein FliN; Validated
Pssm-ID: 181183 [Multi-domain] Cd Length: 137 Bit Score: 45.55 E-value: 4.12e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1425738724 234 QQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGVEI 304
Cdd:PRK07963 52 QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRI 122
|
|
| PRK08119 |
PRK08119 |
flagellar motor switch protein; Validated |
241-315 |
5.15e-05 |
|
flagellar motor switch protein; Validated
Pssm-ID: 236154 [Multi-domain] Cd Length: 382 Bit Score: 44.47 E-value: 5.15e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1425738724 241 DLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNVK 315
Cdd:PRK08119 305 DVPLQVTVELGRTKKSIKDILELGTGSIIELDKLAGEPVDILVNGKLIAKGEVVVIDENFGVRITDIVSQSERIK 379
|
|
| fliN |
PRK08983 |
flagellar motor switch protein FliN; |
211-315 |
4.22e-03 |
|
flagellar motor switch protein FliN;
Pssm-ID: 236360 [Multi-domain] Cd Length: 127 Bit Score: 36.65 E-value: 4.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 211 EDFETDDFDIKKSESEINDENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGY 290
Cdd:PRK08983 20 EEALAAELDELVDDSAPITEDEARKLDTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAH 99
|
90 100
....*....|....*....|....*
gi 1425738724 291 GELVEVDDKLGVEIHSWLSGNNNVK 315
Cdd:PRK08983 100 GEVVVVNDKFGIRLTDVISQTERIK 124
|
|
| PRK08035 |
PRK08035 |
YscQ/HrcQ family type III secretion apparatus protein; |
149-314 |
6.02e-03 |
|
YscQ/HrcQ family type III secretion apparatus protein;
Pssm-ID: 181204 [Multi-domain] Cd Length: 323 Bit Score: 37.87 E-value: 6.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 149 LYWPIHFVIGFSKTCYRTIVDIEVGDVLLIS-----NNFAYAVIYNTKICDLIYPEELKMVDHFEYEEDFETddfdIKKS 223
Cdd:PRK08035 158 LPWVVGLVAGWCHLTLIQLEQIEPGMGLRLHcagelRLGFCWLWLPGGIQAYILLTEGNTMTIDELNQDIDT----LLAS 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 224 ESEINDENDYQQInSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGVE 303
Cdd:PRK08035 234 GSPMSKSPGTSSV-ELEQLPQQVVMEIGRLSLPIGQLRQLAVGDVLPVGGCFYPEVTIRLNGRIIGQGELLACDNELMVR 312
|
170
....*....|.
gi 1425738724 304 IHSWLSGNNNV 314
Cdd:PRK08035 313 ITRWYLQKNTA 323
|
|
|