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Conserved domains on  [gi|1425738724|gb|RBV50930|]
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type III secretion system protein [Escherichia coli]

Protein Classification

PRK08158 family protein( domain architecture ID 11483113)

PRK08158 family protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK08158 PRK08158
YscQ/HrcQ family type III secretion apparatus protein;
1-315 0e+00

YscQ/HrcQ family type III secretion apparatus protein;


:

Pssm-ID: 181259 [Multi-domain]  Cd Length: 303  Bit Score: 526.36  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724   1 MFGLRKVNGNTHSFETTFQNWKEKGEDVALLMPEFSAKWLPIAEESGSWSGWVLLRELFPLISAELAGMALMPETERLIV 80
Cdd:PRK08158    2 SLRVRQIDRREWLLAQTATEWQRHGQDVTLEYPTRQGMWLRLADAEGSWSGWIQPGDWLEHVSPELAGAAVSAGAEHLVV 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724  81 EWLSLSSTPLNLKYPELKYNRLCVGKVFDGVLSPAQPLIRIWTGELNIWldkvtvcqYENAPTLD------KKSLYWPIH 154
Cdd:PRK08158   82 EWLAATERPLELPVPHLSCRRLCVGNPVPGSALPEGPLLRIMTDRGGLW--------FENAPELPavgggrPKMLRWPLR 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 155 FVIGFSKTCYRTIVDIEVGDVLLISNNFAYAVIYNTKIcdliypeelkmvDHFEY-EEDFETDDFDIKKSESEINDENDY 233
Cdd:PRK08158  154 FVIGSSDTQRSLLGRIGIGDVLLISTSRAEVYCYAKKI------------GHFNRvEEGIIVETLDIQHIEEENNTTETA 221
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 234 QQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGVEIHSWLSGNNN 313
Cdd:PRK08158  222 ETLPGLNQLPVKLEFVLYRKNVTLAELEELCQQQLLSLPTNAELNVEIRANGALLGNGELVQMDDTLGVEIHEWLSGSGN 301

                  ..
gi 1425738724 314 VK 315
Cdd:PRK08158  302 VE 303
 
Name Accession Description Interval E-value
PRK08158 PRK08158
YscQ/HrcQ family type III secretion apparatus protein;
1-315 0e+00

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181259 [Multi-domain]  Cd Length: 303  Bit Score: 526.36  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724   1 MFGLRKVNGNTHSFETTFQNWKEKGEDVALLMPEFSAKWLPIAEESGSWSGWVLLRELFPLISAELAGMALMPETERLIV 80
Cdd:PRK08158    2 SLRVRQIDRREWLLAQTATEWQRHGQDVTLEYPTRQGMWLRLADAEGSWSGWIQPGDWLEHVSPELAGAAVSAGAEHLVV 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724  81 EWLSLSSTPLNLKYPELKYNRLCVGKVFDGVLSPAQPLIRIWTGELNIWldkvtvcqYENAPTLD------KKSLYWPIH 154
Cdd:PRK08158   82 EWLAATERPLELPVPHLSCRRLCVGNPVPGSALPEGPLLRIMTDRGGLW--------FENAPELPavgggrPKMLRWPLR 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 155 FVIGFSKTCYRTIVDIEVGDVLLISNNFAYAVIYNTKIcdliypeelkmvDHFEY-EEDFETDDFDIKKSESEINDENDY 233
Cdd:PRK08158  154 FVIGSSDTQRSLLGRIGIGDVLLISTSRAEVYCYAKKI------------GHFNRvEEGIIVETLDIQHIEEENNTTETA 221
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 234 QQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGVEIHSWLSGNNN 313
Cdd:PRK08158  222 ETLPGLNQLPVKLEFVLYRKNVTLAELEELCQQQLLSLPTNAELNVEIRANGALLGNGELVQMDDTLGVEIHEWLSGSGN 301

                  ..
gi 1425738724 314 VK 315
Cdd:PRK08158  302 VE 303
SpaO_YscQ TIGR02551
type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type ...
28-307 5.28e-73

type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type III secretion operons. The gene (YscQ) in Yersinia is essential for YOPs secretion, while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid, and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274196 [Multi-domain]  Cd Length: 298  Bit Score: 226.91  E-value: 5.28e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724  28 VALLMPEFSAKWLPIAEESGSWSGWVLLRELFPLISAELA---------------GMALMPETERLIVEWLSLSSTPLNL 92
Cdd:TIGR02551   1 ALAELPVSSGVWLALALAGQTLSLWLRGAELQLWLAPALAtaafaslplelllalLLAALAPAGLLLTELVALGESPASL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724  93 KYPELKYNRLCVGKVFDGVLSPAQPLIRIWTGELNIWLDKVTVCQYENAPTLDKKSLYWPIHFVIGFSKTCYRTIVDIEV 172
Cdd:TIGR02551  81 PAPQLSPLALRLGLTLEGLDGPEPVLLLATLALWLTWVAAALLAALPARPTVLLKALPLPVRLEIGSSRLALDELRSLEV 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 173 GDVLLISNNFAYAV-IYNTKICDLIYPEELKMVDHFEYEEDFETDDFDIKK----SESEINDENDYQqiNSFEDLPVKIE 247
Cdd:TIGR02551 161 GDVLLLDNPSAARAgLGALLLWGPPWARVLLADDRLELIDGITADNLDLSDltdtESPDEPAAPTPE--VDLDQLPVTLE 238
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 248 FVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGVEIHSW 307
Cdd:TIGR02551 239 FELGRLTLTLAELAALQPGSVLELNVPVDGPVRLRANGRLLGRGELVDVGGRLGVRILEL 298
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
214-309 8.75e-18

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 79.28  E-value: 8.75e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 214 ETDDFDIKKSESEINDENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGEL 293
Cdd:COG1886    77 DEEPAEFEPLEDAPEAEEEPENLDLLLDVPVEVTVELGRTRLTLRELLKLGPGSVIELDRLAGEPVDILVNGRLIARGEV 156
                          90
                  ....*....|....*.
gi 1425738724 294 VEVDDKLGVEIHSWLS 309
Cdd:COG1886   157 VVVDDRFGVRITEIVS 172
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
244-309 5.26e-08

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 48.87  E-value: 5.26e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1425738724 244 VKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGVEIHSWLS 309
Cdd:pfam01052   1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGGNLAVRITEIID 66
 
Name Accession Description Interval E-value
PRK08158 PRK08158
YscQ/HrcQ family type III secretion apparatus protein;
1-315 0e+00

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181259 [Multi-domain]  Cd Length: 303  Bit Score: 526.36  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724   1 MFGLRKVNGNTHSFETTFQNWKEKGEDVALLMPEFSAKWLPIAEESGSWSGWVLLRELFPLISAELAGMALMPETERLIV 80
Cdd:PRK08158    2 SLRVRQIDRREWLLAQTATEWQRHGQDVTLEYPTRQGMWLRLADAEGSWSGWIQPGDWLEHVSPELAGAAVSAGAEHLVV 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724  81 EWLSLSSTPLNLKYPELKYNRLCVGKVFDGVLSPAQPLIRIWTGELNIWldkvtvcqYENAPTLD------KKSLYWPIH 154
Cdd:PRK08158   82 EWLAATERPLELPVPHLSCRRLCVGNPVPGSALPEGPLLRIMTDRGGLW--------FENAPELPavgggrPKMLRWPLR 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 155 FVIGFSKTCYRTIVDIEVGDVLLISNNFAYAVIYNTKIcdliypeelkmvDHFEY-EEDFETDDFDIKKSESEINDENDY 233
Cdd:PRK08158  154 FVIGSSDTQRSLLGRIGIGDVLLISTSRAEVYCYAKKI------------GHFNRvEEGIIVETLDIQHIEEENNTTETA 221
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 234 QQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGVEIHSWLSGNNN 313
Cdd:PRK08158  222 ETLPGLNQLPVKLEFVLYRKNVTLAELEELCQQQLLSLPTNAELNVEIRANGALLGNGELVQMDDTLGVEIHEWLSGSGN 301

                  ..
gi 1425738724 314 VK 315
Cdd:PRK08158  302 VE 303
SpaO_YscQ TIGR02551
type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type ...
28-307 5.28e-73

type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type III secretion operons. The gene (YscQ) in Yersinia is essential for YOPs secretion, while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid, and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274196 [Multi-domain]  Cd Length: 298  Bit Score: 226.91  E-value: 5.28e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724  28 VALLMPEFSAKWLPIAEESGSWSGWVLLRELFPLISAELA---------------GMALMPETERLIVEWLSLSSTPLNL 92
Cdd:TIGR02551   1 ALAELPVSSGVWLALALAGQTLSLWLRGAELQLWLAPALAtaafaslplelllalLLAALAPAGLLLTELVALGESPASL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724  93 KYPELKYNRLCVGKVFDGVLSPAQPLIRIWTGELNIWLDKVTVCQYENAPTLDKKSLYWPIHFVIGFSKTCYRTIVDIEV 172
Cdd:TIGR02551  81 PAPQLSPLALRLGLTLEGLDGPEPVLLLATLALWLTWVAAALLAALPARPTVLLKALPLPVRLEIGSSRLALDELRSLEV 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 173 GDVLLISNNFAYAV-IYNTKICDLIYPEELKMVDHFEYEEDFETDDFDIKK----SESEINDENDYQqiNSFEDLPVKIE 247
Cdd:TIGR02551 161 GDVLLLDNPSAARAgLGALLLWGPPWARVLLADDRLELIDGITADNLDLSDltdtESPDEPAAPTPE--VDLDQLPVTLE 238
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 248 FVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGVEIHSW 307
Cdd:TIGR02551 239 FELGRLTLTLAELAALQPGSVLELNVPVDGPVRLRANGRLLGRGELVDVGGRLGVRILEL 298
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
214-309 8.75e-18

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 79.28  E-value: 8.75e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 214 ETDDFDIKKSESEINDENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGEL 293
Cdd:COG1886    77 DEEPAEFEPLEDAPEAEEEPENLDLLLDVPVEVTVELGRTRLTLRELLKLGPGSVIELDRLAGEPVDILVNGRLIARGEV 156
                          90
                  ....*....|....*.
gi 1425738724 294 VEVDDKLGVEIHSWLS 309
Cdd:COG1886   157 VVVDDRFGVRITEIVS 172
PRK06782 PRK06782
flagellar motor switch protein; Reviewed
170-304 1.88e-10

flagellar motor switch protein; Reviewed


Pssm-ID: 235861 [Multi-domain]  Cd Length: 528  Bit Score: 61.39  E-value: 1.88e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 170 IEVGDVLLISNNFAYAVIYNTKICDLIYPEELK-MVDHFEYEEDFETDDFDIKKSESEI---------------NDENDY 233
Cdd:PRK06782  374 IEVDELVQITFNLEVGDLLQTKMYQILPISEAKeMVRLLLYPMVKEEEEIATEEIEPEKvvepvvqpiefkevkQMEPVY 453
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1425738724 234 QQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGVEI 304
Cdd:PRK06782  454 MDTSILQDVPMNVKVVFGSTKKTIQDILSLQENEVVVLDEDIDEPIRIYVNGVLVAYGELVNVDGFFGVKV 524
fliN TIGR02480
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ...
236-304 8.36e-09

flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131533 [Multi-domain]  Cd Length: 77  Bit Score: 51.44  E-value: 8.36e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1425738724 236 INSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGVEI 304
Cdd:TIGR02480   2 IDLILDIPVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVEDKFGIRI 70
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
244-309 5.26e-08

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 48.87  E-value: 5.26e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1425738724 244 VKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGVEIHSWLS 309
Cdd:pfam01052   1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGGNLAVRITEIID 66
PRK06933 PRK06933
YscQ/HrcQ family type III secretion apparatus protein;
224-304 2.62e-07

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 235891 [Multi-domain]  Cd Length: 308  Bit Score: 51.28  E-value: 2.62e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 224 ESEINDENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGVE 303
Cdd:PRK06933  219 HTESNDLNPEPLLTDLNQLPVQVSFEVGRQTLDLHTLTSLQPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVR 298

                  .
gi 1425738724 304 I 304
Cdd:PRK06933  299 V 299
PRK08916 PRK08916
flagellar motor switch protein FliN;
241-302 8.60e-07

flagellar motor switch protein FliN;


Pssm-ID: 236350 [Multi-domain]  Cd Length: 116  Bit Score: 47.05  E-value: 8.60e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1425738724 241 DLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGV 302
Cdd:PRK08916   44 DVPVQVSAVLGRSKMDVGQLLKLGPGSVLELDRKVGEAIDIYVNNRLVARGEVVLVEDRLGV 105
fliN PRK07963
flagellar motor switch protein FliN; Validated
234-304 4.12e-06

flagellar motor switch protein FliN; Validated


Pssm-ID: 181183 [Multi-domain]  Cd Length: 137  Bit Score: 45.55  E-value: 4.12e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1425738724 234 QQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGVEI 304
Cdd:PRK07963   52 QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRI 122
PRK08119 PRK08119
flagellar motor switch protein; Validated
241-315 5.15e-05

flagellar motor switch protein; Validated


Pssm-ID: 236154 [Multi-domain]  Cd Length: 382  Bit Score: 44.47  E-value: 5.15e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1425738724 241 DLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNVK 315
Cdd:PRK08119  305 DVPLQVTVELGRTKKSIKDILELGTGSIIELDKLAGEPVDILVNGKLIAKGEVVVIDENFGVRITDIVSQSERIK 379
fliN PRK08983
flagellar motor switch protein FliN;
211-315 4.22e-03

flagellar motor switch protein FliN;


Pssm-ID: 236360 [Multi-domain]  Cd Length: 127  Bit Score: 36.65  E-value: 4.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 211 EDFETDDFDIKKSESEINDENDYQQINSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGY 290
Cdd:PRK08983   20 EEALAAELDELVDDSAPITEDEARKLDTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAH 99
                          90       100
                  ....*....|....*....|....*
gi 1425738724 291 GELVEVDDKLGVEIHSWLSGNNNVK 315
Cdd:PRK08983  100 GEVVVVNDKFGIRLTDVISQTERIK 124
PRK08035 PRK08035
YscQ/HrcQ family type III secretion apparatus protein;
149-314 6.02e-03

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181204 [Multi-domain]  Cd Length: 323  Bit Score: 37.87  E-value: 6.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 149 LYWPIHFVIGFSKTCYRTIVDIEVGDVLLIS-----NNFAYAVIYNTKICDLIYPEELKMVDHFEYEEDFETddfdIKKS 223
Cdd:PRK08035  158 LPWVVGLVAGWCHLTLIQLEQIEPGMGLRLHcagelRLGFCWLWLPGGIQAYILLTEGNTMTIDELNQDIDT----LLAS 233
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425738724 224 ESEINDENDYQQInSFEDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDKLGVE 303
Cdd:PRK08035  234 GSPMSKSPGTSSV-ELEQLPQQVVMEIGRLSLPIGQLRQLAVGDVLPVGGCFYPEVTIRLNGRIIGQGELLACDNELMVR 312
                         170
                  ....*....|.
gi 1425738724 304 IHSWLSGNNNV 314
Cdd:PRK08035  313 ITRWYLQKNTA 323
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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