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Conserved domains on  [gi|1442209697|gb|RDR80492|]
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hypothetical protein C3999_03470 [Escherichia marmotae]

Protein Classification

DUF1198 domain-containing protein( domain architecture ID 10535480)

DUF1198 domain-containing protein similar to Escherichia coli YicN

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1198 pfam06711
Protein of unknown function (DUF1198); This family consists of several bacterial proteins of ...
 1-142 4.29e-80

Protein of unknown function (DUF1198); This family consists of several bacterial proteins of around 150 residues in length which are specific to Escherichia coli, Salmonella species and Yersinia pestis. The function of this family is unknown.


:

Pssm-ID: 429081  Cd Length: 143  Bit Score: 232.77  E-value: 4.29e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1442209697   1 MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVESMVDQMGKLAGDEFLRYLHRPDESHLQNAAQVLLIWQ 80
Cdd:pfam06711   1 MIWIMLATLVVVFIVGFRVLTSDTRRAIRRLSERLKIKPVYIESMLDQMGKRAGQEFLRYLSRPNAEHLQNAAQVLLIWQ 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1442209697  81 IVIVDGSEQNLHQWHRILQKARLAAPITDAQVRLALGFLRETEPEMQEITAFQMRYNAFFQP 142
Cdd:pfam06711  81 TFIKDPSEENLQRWRRLLQKARLAPPLSDEHIRLALGFLRELDPDMFELAQFQRRYNETFNP 142
 
Name Accession Description Interval E-value
DUF1198 pfam06711
Protein of unknown function (DUF1198); This family consists of several bacterial proteins of ...
 1-142 4.29e-80

Protein of unknown function (DUF1198); This family consists of several bacterial proteins of around 150 residues in length which are specific to Escherichia coli, Salmonella species and Yersinia pestis. The function of this family is unknown.


Pssm-ID: 429081  Cd Length: 143  Bit Score: 232.77  E-value: 4.29e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1442209697   1 MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVESMVDQMGKLAGDEFLRYLHRPDESHLQNAAQVLLIWQ 80
Cdd:pfam06711   1 MIWIMLATLVVVFIVGFRVLTSDTRRAIRRLSERLKIKPVYIESMLDQMGKRAGQEFLRYLSRPNAEHLQNAAQVLLIWQ 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1442209697  81 IVIVDGSEQNLHQWHRILQKARLAAPITDAQVRLALGFLRETEPEMQEITAFQMRYNAFFQP 142
Cdd:pfam06711  81 TFIKDPSEENLQRWRRLLQKARLAPPLSDEHIRLALGFLRELDPDMFELAQFQRRYNETFNP 142
 
Name Accession Description Interval E-value
DUF1198 pfam06711
Protein of unknown function (DUF1198); This family consists of several bacterial proteins of ...
 1-142 4.29e-80

Protein of unknown function (DUF1198); This family consists of several bacterial proteins of around 150 residues in length which are specific to Escherichia coli, Salmonella species and Yersinia pestis. The function of this family is unknown.


Pssm-ID: 429081  Cd Length: 143  Bit Score: 232.77  E-value: 4.29e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1442209697   1 MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVESMVDQMGKLAGDEFLRYLHRPDESHLQNAAQVLLIWQ 80
Cdd:pfam06711   1 MIWIMLATLVVVFIVGFRVLTSDTRRAIRRLSERLKIKPVYIESMLDQMGKRAGQEFLRYLSRPNAEHLQNAAQVLLIWQ 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1442209697  81 IVIVDGSEQNLHQWHRILQKARLAAPITDAQVRLALGFLRETEPEMQEITAFQMRYNAFFQP 142
Cdd:pfam06711  81 TFIKDPSEENLQRWRRLLQKARLAPPLSDEHIRLALGFLRELDPDMFELAQFQRRYNETFNP 142
TPP_enzyme_M pfam00205
Thiamine pyrophosphate enzyme, central domain; The central domain of TPP enzymes contains a ...
 11-51 7.94e-03

Thiamine pyrophosphate enzyme, central domain; The central domain of TPP enzymes contains a 2-fold Rossman fold.


Pssm-ID: 425523 [Multi-domain]  Cd Length: 137  Bit Score: 34.46  E-value: 7.94e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1442209697  11 VVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVesmvdQMGK 51
Cdd:pfam00205  14 PVILAGGGVRRSGASEELRELAEKLGIPVVTT-----LMGK 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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