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Conserved domains on  [gi|1444851386|gb|RDV54576|]
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hypothetical protein DUD58_25410 (plasmid) [Bacillus anthracis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5513 super family cl38889
Family of unknown function (DUF5513); This is a family of unknown function found in Bacillus.
 1-91 1.69e-62

Family of unknown function (DUF5513); This is a family of unknown function found in Bacillus.


The actual alignment was detected with superfamily member pfam17632:

Pssm-ID: 340347  Cd Length: 91  Bit Score: 184.12  E-value: 1.69e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444851386  1 MLLSELNPNHDYAKEGKYLILSLRKKKGVRKDKFIEIPITWFDYNFGEKVEWLIVREYQPSVNGKEKYTNCKLENIHAQV 80
Cdd:pfam17632  1 MLLSELKPNHDYAKEGKYLILSLRKKKGVRKDKFIEIPITWFDYNFGEKVEWLIVREYQPSVNGKEKYTNCKLENIHAQV 80

                         90
                 ....*....|.
gi 1444851386 81 SVVNVKGERMK 91
Cdd:pfam17632 81 SVVNVKGERMK 91
 
Name Accession Description Interval E-value
DUF5513 pfam17632
Family of unknown function (DUF5513); This is a family of unknown function found in Bacillus.
 1-91 1.69e-62

Family of unknown function (DUF5513); This is a family of unknown function found in Bacillus.


Pssm-ID: 340347  Cd Length: 91  Bit Score: 184.12  E-value: 1.69e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444851386  1 MLLSELNPNHDYAKEGKYLILSLRKKKGVRKDKFIEIPITWFDYNFGEKVEWLIVREYQPSVNGKEKYTNCKLENIHAQV 80
Cdd:pfam17632  1 MLLSELKPNHDYAKEGKYLILSLRKKKGVRKDKFIEIPITWFDYNFGEKVEWLIVREYQPSVNGKEKYTNCKLENIHAQV 80

                         90
                 ....*....|.
gi 1444851386 81 SVVNVKGERMK 91
Cdd:pfam17632 81 SVVNVKGERMK 91
 
Name Accession Description Interval E-value
DUF5513 pfam17632
Family of unknown function (DUF5513); This is a family of unknown function found in Bacillus.
 1-91 1.69e-62

Family of unknown function (DUF5513); This is a family of unknown function found in Bacillus.


Pssm-ID: 340347  Cd Length: 91  Bit Score: 184.12  E-value: 1.69e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1444851386  1 MLLSELNPNHDYAKEGKYLILSLRKKKGVRKDKFIEIPITWFDYNFGEKVEWLIVREYQPSVNGKEKYTNCKLENIHAQV 80
Cdd:pfam17632  1 MLLSELKPNHDYAKEGKYLILSLRKKKGVRKDKFIEIPITWFDYNFGEKVEWLIVREYQPSVNGKEKYTNCKLENIHAQV 80

                         90
                 ....*....|.
gi 1444851386 81 SVVNVKGERMK 91
Cdd:pfam17632 81 SVVNVKGERMK 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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