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Conserved domains on  [gi|1449613344|gb|RFB41804|]
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hypothetical protein DZB86_12075 [Bacillus sp. RC]

Protein Classification

copper resistance D family protein( domain architecture ID 10003365)

copper resistance D (CopD) family protein such as Pseudomonas fluorescens CopD, which is part of a gene cluster involved in copper resistance, together with CopR, CopS, and CopC, and is predicted to be an inner membrane protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PcoD COG1276
Putative copper export protein [Inorganic ion transport and metabolism];
69-269 8.21e-21

Putative copper export protein [Inorganic ion transport and metabolism];


:

Pssm-ID: 440887  Cd Length: 282  Bit Score: 90.50  E-value: 8.21e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1449613344  69 ETVRLVLLETRTGHAWIFVVLIAILCMVAVSIESHPHMYTLLTVALVGGIAYASHAA-----SASALSGMLSHSLHILAV 143
Cdd:COG1276     1 AALLAVLTQTSFGRAWLVRLLLAALLALLLLLAVRSRAGAALLLLLALLALLTLALTghaaaSEGHALAVLADALHLLAA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1449613344 144 GLWGG---VVLIVAAFSKETSNWKNFLSWFTPFAIACFVLLSLSGFISMVIIMGlsNYVNSWATDYGQSLLLKHITIIPL 220
Cdd:COG1276    81 AVWVGgllALLLLLRRLRRGAALAAALRRFSRLALVAVALLALSGVVNAWLRLG--SLSALLTTPYGRLLLAKLALVAVL 158

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1449613344 221 LAFAVINGFLMKKTIKHPEYKP---VMWIRAESIILLIIFLFTAIMVTQSPP 269
Cdd:COG1276   159 LALAALNRRRLVPRLEAGPRALrrlRRSIRAELVLGLLVLGLAAALATTPPP 210
 
Name Accession Description Interval E-value
PcoD COG1276
Putative copper export protein [Inorganic ion transport and metabolism];
69-269 8.21e-21

Putative copper export protein [Inorganic ion transport and metabolism];


Pssm-ID: 440887  Cd Length: 282  Bit Score: 90.50  E-value: 8.21e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1449613344  69 ETVRLVLLETRTGHAWIFVVLIAILCMVAVSIESHPHMYTLLTVALVGGIAYASHAA-----SASALSGMLSHSLHILAV 143
Cdd:COG1276     1 AALLAVLTQTSFGRAWLVRLLLAALLALLLLLAVRSRAGAALLLLLALLALLTLALTghaaaSEGHALAVLADALHLLAA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1449613344 144 GLWGG---VVLIVAAFSKETSNWKNFLSWFTPFAIACFVLLSLSGFISMVIIMGlsNYVNSWATDYGQSLLLKHITIIPL 220
Cdd:COG1276    81 AVWVGgllALLLLLRRLRRGAALAAALRRFSRLALVAVALLALSGVVNAWLRLG--SLSALLTTPYGRLLLAKLALVAVL 158

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1449613344 221 LAFAVINGFLMKKTIKHPEYKP---VMWIRAESIILLIIFLFTAIMVTQSPP 269
Cdd:COG1276   159 LALAALNRRRLVPRLEAGPRALrrlRRSIRAELVLGLLVLGLAAALATTPPP 210
CopD pfam05425
Copper resistance protein D; Copper sequestering activity displayed by some bacteria is ...
 174-263 5.31e-05

Copper resistance protein D; Copper sequestering activity displayed by some bacteria is determined by copper-binding protein products of the copper resistance operon (cop). CopD, together with CopC, perform copper uptake into the cytoplasm.


Pssm-ID: 428466 [Multi-domain]  Cd Length: 96  Bit Score: 41.45  E-value: 5.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1449613344 174 AIACFVLLSLSGFISMVIIMGLSNYvnsWATDYGQSLLLKHITIIPLLAFAVINGFLMKKTIKHPEYKPVM-------WI 246
Cdd:pfam05425   3 ALAAVAALLLTGVVNALLRVGLGGL---LTTAYGQLLLAKLALVLLLLALAALNRFRLVPRLRARGAGGRAlrrrlrrSV 79

                          90
                  ....*....|....*..
gi 1449613344 247 RAESIILLIIFLFTAIM 263
Cdd:pfam05425  80 RLELVLGLVVLGLAAVL 96
 
Name Accession Description Interval E-value
PcoD COG1276
Putative copper export protein [Inorganic ion transport and metabolism];
69-269 8.21e-21

Putative copper export protein [Inorganic ion transport and metabolism];


Pssm-ID: 440887  Cd Length: 282  Bit Score: 90.50  E-value: 8.21e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1449613344  69 ETVRLVLLETRTGHAWIFVVLIAILCMVAVSIESHPHMYTLLTVALVGGIAYASHAA-----SASALSGMLSHSLHILAV 143
Cdd:COG1276     1 AALLAVLTQTSFGRAWLVRLLLAALLALLLLLAVRSRAGAALLLLLALLALLTLALTghaaaSEGHALAVLADALHLLAA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1449613344 144 GLWGG---VVLIVAAFSKETSNWKNFLSWFTPFAIACFVLLSLSGFISMVIIMGlsNYVNSWATDYGQSLLLKHITIIPL 220
Cdd:COG1276    81 AVWVGgllALLLLLRRLRRGAALAAALRRFSRLALVAVALLALSGVVNAWLRLG--SLSALLTTPYGRLLLAKLALVAVL 158

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1449613344 221 LAFAVINGFLMKKTIKHPEYKP---VMWIRAESIILLIIFLFTAIMVTQSPP 269
Cdd:COG1276   159 LALAALNRRRLVPRLEAGPRALrrlRRSIRAELVLGLLVLGLAAALATTPPP 210
CopD pfam05425
Copper resistance protein D; Copper sequestering activity displayed by some bacteria is ...
 174-263 5.31e-05

Copper resistance protein D; Copper sequestering activity displayed by some bacteria is determined by copper-binding protein products of the copper resistance operon (cop). CopD, together with CopC, perform copper uptake into the cytoplasm.


Pssm-ID: 428466 [Multi-domain]  Cd Length: 96  Bit Score: 41.45  E-value: 5.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1449613344 174 AIACFVLLSLSGFISMVIIMGLSNYvnsWATDYGQSLLLKHITIIPLLAFAVINGFLMKKTIKHPEYKPVM-------WI 246
Cdd:pfam05425   3 ALAAVAALLLTGVVNALLRVGLGGL---LTTAYGQLLLAKLALVLLLLALAALNRFRLVPRLRARGAGGRAlrrrlrrSV 79

                          90
                  ....*....|....*..
gi 1449613344 247 RAESIILLIIFLFTAIM 263
Cdd:pfam05425  80 RLELVLGLVVLGLAAVL 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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