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Conserved domains on  [gi|1467101177|gb|RGO22790|]
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hypothetical protein DXB23_14055 [Dorea sp. OM02-2LB]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6128 super family cl45027
Family of unknown function (DUF6128); This presumed domain is functionally uncharacterized. ...
 191-298 3.06e-07

Family of unknown function (DUF6128); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 110 amino acids in length.


The actual alignment was detected with superfamily member pfam19623:

Pssm-ID: 437455  Cd Length: 113  Bit Score: 48.09  E-value: 3.06e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1467101177 191 STPAPAKSPASPCRKISRQDLKHLPRRYWALANNSFLLHGYYAYHHLI--YIDRNGKSFLGVPGIFSQKEQRAARLFGFP 268
Cdd:pfam19623  12 TLPLPDIYCLSPSIKIQIEDLPKIPDLPKDIKTNGFLLLNYGNFGHLClaWNSEHKRRYLGVPGIFDNEKSFISKLFGFQ 91

                          90       100       110
                  ....*....|....*....|....*....|
gi 1467101177 269 EFSreylnTLELDSDECSgcdHFGYWIRPV 298
Cdd:pfam19623  92 NFI-----TVPPKKHKTG---NFGYFILPV 113
 
Name Accession Description Interval E-value
DUF6128 pfam19623
Family of unknown function (DUF6128); This presumed domain is functionally uncharacterized. ...
 191-298 3.06e-07

Family of unknown function (DUF6128); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 110 amino acids in length.


Pssm-ID: 437455  Cd Length: 113  Bit Score: 48.09  E-value: 3.06e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1467101177 191 STPAPAKSPASPCRKISRQDLKHLPRRYWALANNSFLLHGYYAYHHLI--YIDRNGKSFLGVPGIFSQKEQRAARLFGFP 268
Cdd:pfam19623  12 TLPLPDIYCLSPSIKIQIEDLPKIPDLPKDIKTNGFLLLNYGNFGHLClaWNSEHKRRYLGVPGIFDNEKSFISKLFGFQ 91

                          90       100       110
                  ....*....|....*....|....*....|
gi 1467101177 269 EFSreylnTLELDSDECSgcdHFGYWIRPV 298
Cdd:pfam19623  92 NFI-----TVPPKKHKTG---NFGYFILPV 113
 
Name Accession Description Interval E-value
DUF6128 pfam19623
Family of unknown function (DUF6128); This presumed domain is functionally uncharacterized. ...
 191-298 3.06e-07

Family of unknown function (DUF6128); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 110 amino acids in length.


Pssm-ID: 437455  Cd Length: 113  Bit Score: 48.09  E-value: 3.06e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1467101177 191 STPAPAKSPASPCRKISRQDLKHLPRRYWALANNSFLLHGYYAYHHLI--YIDRNGKSFLGVPGIFSQKEQRAARLFGFP 268
Cdd:pfam19623  12 TLPLPDIYCLSPSIKIQIEDLPKIPDLPKDIKTNGFLLLNYGNFGHLClaWNSEHKRRYLGVPGIFDNEKSFISKLFGFQ 91

                          90       100       110
                  ....*....|....*....|....*....|
gi 1467101177 269 EFSreylnTLELDSDECSgcdHFGYWIRPV 298
Cdd:pfam19623  92 NFI-----TVPPKKHKTG---NFGYFILPV 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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