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Conserved domains on  [gi|1470970957|gb|RHD69057|]
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hypothetical protein DW784_02430 [Parabacteroides merdae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DnaA super family cl33966
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
4-101 4.86e-03

Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];


The actual alignment was detected with superfamily member COG0593:

Pssm-ID: 440358 [Multi-domain]  Cd Length: 303  Bit Score: 37.86  E-value: 4.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1470970957   4 HIETNFRAIQRILDSCVAHdyktkvdALFLKREY---LTKAQIKDYLRQEIFRVT-ENIVAIQQKYRVVRdivqdmdipd 79
Cdd:COG0593   197 RIERNVRELEGALNRLDAY-------ALLTGRPItleLAREVLKDLLRAQKKEITiEDIQKAVAEYFGVS---------- 259

                          90       100
                  ....*....|....*....|..
gi 1470970957  80 flwesgyFEDLTSDERKKYIAF 101
Cdd:COG0593   260 -------VADLLSKSRTREIAR 274
 
Name Accession Description Interval E-value
DnaA COG0593
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
4-101 4.86e-03

Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];


Pssm-ID: 440358 [Multi-domain]  Cd Length: 303  Bit Score: 37.86  E-value: 4.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1470970957   4 HIETNFRAIQRILDSCVAHdyktkvdALFLKREY---LTKAQIKDYLRQEIFRVT-ENIVAIQQKYRVVRdivqdmdipd 79
Cdd:COG0593   197 RIERNVRELEGALNRLDAY-------ALLTGRPItleLAREVLKDLLRAQKKEITiEDIQKAVAEYFGVS---------- 259

                          90       100
                  ....*....|....*....|..
gi 1470970957  80 flwesgyFEDLTSDERKKYIAF 101
Cdd:COG0593   260 -------VADLLSKSRTREIAR 274
 
Name Accession Description Interval E-value
DnaA COG0593
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
4-101 4.86e-03

Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];


Pssm-ID: 440358 [Multi-domain]  Cd Length: 303  Bit Score: 37.86  E-value: 4.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1470970957   4 HIETNFRAIQRILDSCVAHdyktkvdALFLKREY---LTKAQIKDYLRQEIFRVT-ENIVAIQQKYRVVRdivqdmdipd 79
Cdd:COG0593   197 RIERNVRELEGALNRLDAY-------ALLTGRPItleLAREVLKDLLRAQKKEITiEDIQKAVAEYFGVS---------- 259

                          90       100
                  ....*....|....*....|..
gi 1470970957  80 flwesgyFEDLTSDERKKYIAF 101
Cdd:COG0593   260 -------VADLLSKSRTREIAR 274
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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