NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1476844055|gb|RIF75280|]
View 

lipoprotein YqhH [Shigella boydii]

Protein Classification

PRK09973 family protein( domain architecture ID 10013390)

PRK09973 family protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK09973 PRK09973
lipoprotein YqhH;
1-85 6.45e-54

lipoprotein YqhH;


:

Pssm-ID: 170188  Cd Length: 85  Bit Score: 162.09  E-value: 6.45e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476844055  1 MKTIFTVGAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLEQDIKALRPQIYAAKSEANRANTRLDAQDYFDCLRCL 80
Cdd:PRK09973   1 MKTIFTVGAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQDYFDCLRCL 80


                 ....*
gi 1476844055 81 RMYAE 85
Cdd:PRK09973  81 RMYAE 85
 
Name Accession Description Interval E-value
PRK09973 PRK09973
lipoprotein YqhH;
1-85 6.45e-54

lipoprotein YqhH;


Pssm-ID: 170188  Cd Length: 85  Bit Score: 162.09  E-value: 6.45e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476844055  1 MKTIFTVGAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLEQDIKALRPQIYAAKSEANRANTRLDAQDYFDCLRCL 80
Cdd:PRK09973   1 MKTIFTVGAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQDYFDCLRCL 80


                 ....*
gi 1476844055 81 RMYAE 85
Cdd:PRK09973  81 RMYAE 85
Lpp COG4238
Outer membrane murein-binding lipoprotein Lpp [Cell wall/membrane/envelope biogenesis];
1-74 2.27e-26

Outer membrane murein-binding lipoprotein Lpp [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443380 [Multi-domain]  Cd Length: 77  Bit Score: 91.95  E-value: 2.27e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1476844055  1 MKTIFTVGAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLEQDIKALRPQIYAAKSEANRANTRLDAQDYF 74
Cdd:COG4238    1 MNRKLLLGAAILSSLLLAGCSNNSKIDQLSSDVQSLNAKVDQLSNDVSALRADVQAAKEEAARANQRLDNQATS 74
LPP pfam04728
Lipoprotein leucine-zipper; This is leucine-zipper is found in the enterobacterial outer ...
 25-71 4.65e-11

Lipoprotein leucine-zipper; This is leucine-zipper is found in the enterobacterial outer membrane lipoprotein LPP. It is likely that this domain oligomerises and is involved in protein-protein interactions. As such it is a bundle of alpha-helical coiled-coils, which are known to play key roles in mediating specific protein-protein interactions for in molecular recognition and the assembly of multi-protein complexes.


Pssm-ID: 428092 [Multi-domain]  Cd Length: 53  Bit Score: 52.74  E-value: 4.65e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 1476844055 25 KVNQLASNVQTLNAKIARLEQDIKALRPQIYAAKSEANRANTRLDAQ 71
Cdd:pfam04728  1 KVDQLSSQVSSLKSKVDQLSSDVNSAKADVQAAKEEAARANQRLDNQ 47
Ala_zip_lipo NF040598
Lpp/OprI family alanine-zipper lipoprotein; This model derives from PF11839 but is more ...
 6-69 2.72e-04

Lpp/OprI family alanine-zipper lipoprotein; This model derives from PF11839 but is more narrowly focused. All member sequences of the seed alignment are bacterial lipoproteins between 78 and 103 amino acids in length. Members include OprI (major outer membrane lipoprotein I) from Pseudomonas aeruginosa, and Lpp (Braun's lipoprotein), called the most abundant protein in Escherichia coli. Lpp becomes covalently linked to the cell wall, while anchored in the inner leaflet of the outer membrane, providing structural stability to the cell envelope.


Pssm-ID: 468572 [Multi-domain]  Cd Length: 90  Bit Score: 36.12  E-value: 2.72e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1476844055  6 TVGAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLEQDIKALRPQ--------------IYAAKSEANRANTRLD 69
Cdd:NF040598   4 KLSALALSLALLAGCATTSDLENLQSQVQELDAKVDQASSDAAAAQSRadeaaakaeqaeaaANAAQQEADEANERAD 81
 
Name Accession Description Interval E-value
PRK09973 PRK09973
lipoprotein YqhH;
1-85 6.45e-54

lipoprotein YqhH;


Pssm-ID: 170188  Cd Length: 85  Bit Score: 162.09  E-value: 6.45e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476844055  1 MKTIFTVGAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLEQDIKALRPQIYAAKSEANRANTRLDAQDYFDCLRCL 80
Cdd:PRK09973   1 MKTIFTVGAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQDYFDCLRCL 80


                 ....*
gi 1476844055 81 RMYAE 85
Cdd:PRK09973  81 RMYAE 85
Lpp COG4238
Outer membrane murein-binding lipoprotein Lpp [Cell wall/membrane/envelope biogenesis];
1-74 2.27e-26

Outer membrane murein-binding lipoprotein Lpp [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443380 [Multi-domain]  Cd Length: 77  Bit Score: 91.95  E-value: 2.27e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1476844055  1 MKTIFTVGAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLEQDIKALRPQIYAAKSEANRANTRLDAQDYF 74
Cdd:COG4238    1 MNRKLLLGAAILSSLLLAGCSNNSKIDQLSSDVQSLNAKVDQLSNDVSALRADVQAAKEEAARANQRLDNQATS 74
PRK15396 PRK15396
major outer membrane lipoprotein;
2-71 4.63e-19

major outer membrane lipoprotein;


Pssm-ID: 185294  Cd Length: 78  Bit Score: 73.39  E-value: 4.63e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476844055  2 KTIFTVGAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLEQDIKALRPQIYAAKSEANRANTRLDAQ 71
Cdd:PRK15396   3 RTKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72
LPP pfam04728
Lipoprotein leucine-zipper; This is leucine-zipper is found in the enterobacterial outer ...
 25-71 4.65e-11

Lipoprotein leucine-zipper; This is leucine-zipper is found in the enterobacterial outer membrane lipoprotein LPP. It is likely that this domain oligomerises and is involved in protein-protein interactions. As such it is a bundle of alpha-helical coiled-coils, which are known to play key roles in mediating specific protein-protein interactions for in molecular recognition and the assembly of multi-protein complexes.


Pssm-ID: 428092 [Multi-domain]  Cd Length: 53  Bit Score: 52.74  E-value: 4.65e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 1476844055 25 KVNQLASNVQTLNAKIARLEQDIKALRPQIYAAKSEANRANTRLDAQ 71
Cdd:pfam04728  1 KVDQLSSQVSSLKSKVDQLSSDVNSAKADVQAAKEEAARANQRLDNQ 47
Ala_zip_lipo NF040598
Lpp/OprI family alanine-zipper lipoprotein; This model derives from PF11839 but is more ...
 6-69 2.72e-04

Lpp/OprI family alanine-zipper lipoprotein; This model derives from PF11839 but is more narrowly focused. All member sequences of the seed alignment are bacterial lipoproteins between 78 and 103 amino acids in length. Members include OprI (major outer membrane lipoprotein I) from Pseudomonas aeruginosa, and Lpp (Braun's lipoprotein), called the most abundant protein in Escherichia coli. Lpp becomes covalently linked to the cell wall, while anchored in the inner leaflet of the outer membrane, providing structural stability to the cell envelope.


Pssm-ID: 468572 [Multi-domain]  Cd Length: 90  Bit Score: 36.12  E-value: 2.72e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1476844055  6 TVGAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLEQDIKALRPQ--------------IYAAKSEANRANTRLD 69
Cdd:NF040598   4 KLSALALSLALLAGCATTSDLENLQSQVQELDAKVDQASSDAAAAQSRadeaaakaeqaeaaANAAQQEADEANERAD 81
PRK11530 PRK11530
hypothetical protein; Provisional
 1-53 1.14e-03

hypothetical protein; Provisional


Pssm-ID: 236923  Cd Length: 183  Bit Score: 35.38  E-value: 1.14e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1476844055   1 MKTIFTVGAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLEQDIKALRPQ 53
Cdd:PRK11530    1 MTTRYLRLLLLGSLLLLAGCAQQSEVRQMHNSVSTLNQEMTQLTQQAVAIEQQ 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH