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Conserved domains on  [gi|1476853387|gb|RIF83352|]
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4-amino-4-deoxy-L-arabinose-phospho-UDP flippase [Shigella boydii]

Protein Classification

4-amino-4-deoxy-L-arabinose-phospho-UDP flippase( domain architecture ID 10011885)

4-amino-4-deoxy-L-arabinose-phospho-UDP flippase subunit ArnF, together with ArnE, may transport 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol from the cytoplasm to the periplasm

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK02971 PRK02971
4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
 1-128 9.35e-45

4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional


:

Pssm-ID: 235094  Cd Length: 129  Bit Score: 142.06  E-value: 9.35e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476853387   1 MGLIWGLFSVIIASVAQLSLGFAASHLPPMTHLWDFIAALLAFGLDARILLLGLLGYLLSVFCWYKTLHKLALSKAYALL 80
Cdd:PRK02971    2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLL 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1476853387  81 SMSYVLVWIASMVLPGWEGTFSLKALLGVACIMSGLMLIFLPTTKQRY 128
Cdd:PRK02971   82 SLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTKARY 129
 
Name Accession Description Interval E-value
PRK02971 PRK02971
4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
 1-128 9.35e-45

4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional


Pssm-ID: 235094  Cd Length: 129  Bit Score: 142.06  E-value: 9.35e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476853387   1 MGLIWGLFSVIIASVAQLSLGFAASHLPPMTHLWDFIAALLAFGLDARILLLGLLGYLLSVFCWYKTLHKLALSKAYALL 80
Cdd:PRK02971    2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLL 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1476853387  81 SMSYVLVWIASMVLPGWEGTFSLKALLGVACIMSGLMLIFLPTTKQRY 128
Cdd:PRK02971   82 SLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTKARY 129
 
Name Accession Description Interval E-value
PRK02971 PRK02971
4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
 1-128 9.35e-45

4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional


Pssm-ID: 235094  Cd Length: 129  Bit Score: 142.06  E-value: 9.35e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476853387   1 MGLIWGLFSVIIASVAQLSLGFAASHLPPMTHLWDFIAALLAFGLDARILLLGLLGYLLSVFCWYKTLHKLALSKAYALL 80
Cdd:PRK02971    2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLL 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1476853387  81 SMSYVLVWIASMVLPGWEGTFSLKALLGVACIMSGLMLIFLPTTKQRY 128
Cdd:PRK02971   82 SLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTKARY 129
PRK10535 PRK10535
macrolide ABC transporter ATP-binding protein/permease MacB;
80-122 6.76e-03

macrolide ABC transporter ATP-binding protein/permease MacB;


Pssm-ID: 182528 [Multi-domain]  Cd Length: 648  Bit Score: 35.08  E-value: 6.76e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1476853387  80 LSMSYVLVWIASMVLPGWEGTFSLKALL-GVAC-IMSGLMLIFLP 122
Cdd:PRK10535  588 ITLSLLIAFTLQLFLPGWEIGFSPLALLsAFLCsTVTGILFGWLP 632
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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