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Conserved domains on  [gi|1478544097|gb|RIO51748|]
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single-stranded DNA-binding protein [Staphylococcus pasteuri]

Protein Classification

single-stranded DNA-binding protein( domain architecture ID 11427956)

single-stranded DNA (ssDNA)-binding protein plays a key role in DNA replication, recombination, and repair

CATH:  2.40.50.140
Gene Ontology:  GO:0003697|GO:0006260
PubMed:  12598368|8458342|27838363
SCOP:  4000346

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
2-109 2.68e-36

Single-stranded DNA-binding protein [Replication, recombination and repair];


:

Pssm-ID: 440394  Cd Length: 116  Bit Score: 119.94  E-value: 2.68e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478544097   2 LNKIVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKDQNNEIA--CDYLYCKAFGKTASNIEKYTHQGSLVGITGQMRS 79
Cdd:COG0629     1 MNKVTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKDQDGEWKdeTDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRT 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1478544097  80 RKYE-KDNQTHFVTELYVETIKFMSSKAKES 109
Cdd:COG0629    81 RSWEdKDGQKRYTTEVVADEIQFLGSRPSGG 111
 
Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
2-109 2.68e-36

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 119.94  E-value: 2.68e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478544097   2 LNKIVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKDQNNEIA--CDYLYCKAFGKTASNIEKYTHQGSLVGITGQMRS 79
Cdd:COG0629     1 MNKVTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKDQDGEWKdeTDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRT 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1478544097  80 RKYE-KDNQTHFVTELYVETIKFMSSKAKES 109
Cdd:COG0629    81 RSWEdKDGQKRYTTEVVADEIQFLGSRPSGG 111
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 2-102 8.84e-33

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 110.79  E-value: 8.84e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478544097   2 LNKIVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKDQ-NNEIACDYLYCKAFGKTASNIEKYTHQGSLVGITGQMRSR 80
Cdd:pfam00436   1 MNKVILVGRLTRDPELRYTPNGNAVANFTLATNRRFKDRgEGDEETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQTR 80

                          90       100
                  ....*....|....*....|...
gi 1478544097  81 KYE-KDNQTHFVTELYVETIKFM 102
Cdd:pfam00436  81 KYEdQEGQKRYVTEIVADEVQFL 103
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 1-122 2.34e-27

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 99.03  E-value: 2.34e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478544097   1 MLNKIVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKDQNNEIA--CDYLYCKAFGKTASNIEKYTHQGSLVGITGQMR 78
Cdd:TIGR00621   3 MVNKVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDQDGEWKeeTEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLR 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1478544097  79 SRKYE-KDNQTHFVTELYVETIKFMSSKAKESNILSNEYDEESNE 122
Cdd:TIGR00621  83 TRKWEdQNGQKRSKTEIIADNVQLLDLLGARAQGGEFSGGGGSGN 127
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 5-101 7.65e-25

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 90.36  E-value: 7.65e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478544097   5 IVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKDQNNEI-ACDYLYCKAFGKTASNIEKYTHQGSLVGITGQMRSRKYE 83
Cdd:cd04496     1 VILIGRLGKDPELRYTPSGTPVARFSLAVNRRRKDRDEEEeETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSWE 80

                          90
                  ....*....|....*....
gi 1478544097  84 -KDNQTHFVTELYVETIKF 101
Cdd:cd04496    81 dKDGQKRYGTEVVADRIEF 99
PRK06752 PRK06752
single-stranded DNA-binding protein; Validated
 1-110 1.36e-24

single-stranded DNA-binding protein; Validated


Pssm-ID: 168660  Cd Length: 112  Bit Score: 90.48  E-value: 1.36e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478544097   1 MLNKIVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKDQNNEIACDYLYCKAFGKTASNIEKYTHQGSLVGITGQMRSR 80
Cdd:PRK06752    1 MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCTKGSLVGITGRIHTR 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1478544097  81 KYEKDNQTH-FVTELYVETIKFMSSKAKESN 110
Cdd:PRK06752   81 NYEDDQGKRiYITEVVIESITFLERRREGAS 111
 
Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
2-109 2.68e-36

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 119.94  E-value: 2.68e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478544097   2 LNKIVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKDQNNEIA--CDYLYCKAFGKTASNIEKYTHQGSLVGITGQMRS 79
Cdd:COG0629     1 MNKVTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKDQDGEWKdeTDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRT 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1478544097  80 RKYE-KDNQTHFVTELYVETIKFMSSKAKES 109
Cdd:COG0629    81 RSWEdKDGQKRYTTEVVADEIQFLGSRPSGG 111
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 2-102 8.84e-33

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 110.79  E-value: 8.84e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478544097   2 LNKIVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKDQ-NNEIACDYLYCKAFGKTASNIEKYTHQGSLVGITGQMRSR 80
Cdd:pfam00436   1 MNKVILVGRLTRDPELRYTPNGNAVANFTLATNRRFKDRgEGDEETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQTR 80

                          90       100
                  ....*....|....*....|...
gi 1478544097  81 KYE-KDNQTHFVTELYVETIKFM 102
Cdd:pfam00436  81 KYEdQEGQKRYVTEIVADEVQFL 103
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 1-122 2.34e-27

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 99.03  E-value: 2.34e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478544097   1 MLNKIVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKDQNNEIA--CDYLYCKAFGKTASNIEKYTHQGSLVGITGQMR 78
Cdd:TIGR00621   3 MVNKVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDQDGEWKeeTEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLR 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1478544097  79 SRKYE-KDNQTHFVTELYVETIKFMSSKAKESNILSNEYDEESNE 122
Cdd:TIGR00621  83 TRKWEdQNGQKRSKTEIIADNVQLLDLLGARAQGGEFSGGGGSGN 127
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 5-101 7.65e-25

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 90.36  E-value: 7.65e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478544097   5 IVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKDQNNEI-ACDYLYCKAFGKTASNIEKYTHQGSLVGITGQMRSRKYE 83
Cdd:cd04496     1 VILIGRLGKDPELRYTPSGTPVARFSLAVNRRRKDRDEEEeETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSWE 80

                          90
                  ....*....|....*....
gi 1478544097  84 -KDNQTHFVTELYVETIKF 101
Cdd:cd04496    81 dKDGQKRYGTEVVADRIEF 99
PRK06752 PRK06752
single-stranded DNA-binding protein; Validated
 1-110 1.36e-24

single-stranded DNA-binding protein; Validated


Pssm-ID: 168660  Cd Length: 112  Bit Score: 90.48  E-value: 1.36e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478544097   1 MLNKIVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKDQNNEIACDYLYCKAFGKTASNIEKYTHQGSLVGITGQMRSR 80
Cdd:PRK06752    1 MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCTKGSLVGITGRIHTR 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1478544097  81 KYEKDNQTH-FVTELYVETIKFMSSKAKESN 110
Cdd:PRK06752   81 NYEDDQGKRiYITEVVIESITFLERRREGAS 111
PRK07274 PRK07274
single-stranded DNA-binding protein; Provisional
 1-117 2.97e-24

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180914  Cd Length: 131  Bit Score: 89.82  E-value: 2.97e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478544097   1 MLNKIVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKDQNNEIACDYLYCKAFGKTASNIEKYTHQGSLVGITGQMRSR 80
Cdd:PRK07274    1 MYNKVILIGRLTATPELVKTANDKSVARVTLAVNRRFKNQNGEREADFINVVLWGKLAETLASYASKGSLISIDGELRTR 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1478544097  81 KYEKDNQTHFVTELYVETIKFMSSKA----KESNILSNEYD 117
Cdd:PRK07274   81 KYEKDGQTHYVTEVLCQSFQLLESRAqramRENNVGNDLAD 121
PRK07275 PRK07275
single-stranded DNA-binding protein; Provisional
 1-121 9.02e-24

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180915 [Multi-domain]  Cd Length: 162  Bit Score: 89.56  E-value: 9.02e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478544097   1 MLNKIVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKDQNNEIACDYLYCKAFGKTASNIEKYTHQGSLVGITGQMRSR 80
Cdd:PRK07275    1 MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1478544097  81 KYE-KDNQTHFVTELYVETIKFMSSKAKESNILSNEYDEESN 121
Cdd:PRK07275   81 NYEnQQGQRVYVTEVVADNFQMLESRATREGGSGGSYNGGFN 122
PRK06751 PRK06751
single-stranded DNA-binding protein; Provisional
 1-105 4.12e-22

single-stranded DNA-binding protein; Provisional


Pssm-ID: 168659 [Multi-domain]  Cd Length: 173  Bit Score: 85.62  E-value: 4.12e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478544097   1 MLNKIVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKDQNNEIACDYLYCKAFGKTASNIEKYTHQGSLVGITGQMRSR 80
Cdd:PRK06751    1 MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR 80

                          90       100
                  ....*....|....*....|....*.
gi 1478544097  81 KYE-KDNQTHFVTELYVETIKFMSSK 105
Cdd:PRK06751   81 NYEgQDGKRVYVTEVLAESVQFLEPR 106
PRK13732 PRK13732
single-stranded DNA-binding protein; Provisional
 2-102 4.62e-17

single-stranded DNA-binding protein; Provisional


Pssm-ID: 184284 [Multi-domain]  Cd Length: 175  Bit Score: 72.84  E-value: 4.62e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478544097   2 LNKIVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKD-QNNEI--ACDYLYCKAFGKTASNIEKYTHQGSLVGITGQMR 78
Cdd:PRK13732    6 INKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDkQTGEMreQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLR 85

                          90       100
                  ....*....|....*....|....
gi 1478544097  79 SRKYEKDNQTHFVTELYVETIKFM 102
Cdd:PRK13732   86 TRSWEDNGITRYVTEILVKTTGTM 109
PRK08486 PRK08486
single-stranded DNA-binding protein; Provisional
 1-121 1.36e-11

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236275 [Multi-domain]  Cd Length: 182  Bit Score: 58.32  E-value: 1.36e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478544097   1 MLNKIVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKDQNNEIACD--YLYCKAFGKTASNIEKYTHQGSLVGITGQMR 78
Cdd:PRK08486    1 MFNKVILVGNLTRDVELRYLPSGSAIATIGLATSRRFKKQDGEKGEEvcFIDIRLFGRTAEIANQYLSKGSKVLIEGRLT 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1478544097  79 SRKYE----KDNQTHFVTelyVETIKFMSSKAkeSNILSNEYDEESN 121
Cdd:PRK08486   81 FESWMdqngQKRSKHTIT---AESMQMLDSKS--DNPQANAMQDNSF 122
PRK06958 PRK06958
single-stranded DNA-binding protein; Provisional
 2-109 6.55e-11

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180777 [Multi-domain]  Cd Length: 182  Bit Score: 56.73  E-value: 6.55e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478544097   2 LNKIVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKD-QNNEI--ACDYLYCKAFGKTASNIEKYTHQGSLVGITGQMR 78
Cdd:PRK06958    4 VNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDkASGEFkeATEWHRVAFFGRLAEIVGEYLKKGSSVYIEGRIR 83

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1478544097  79 SRKYE-KDNQTHFVTELYVETIKFMSSKAKES 109
Cdd:PRK06958   84 TRKWQgQDGQDRYSTEIVADQMQMLGGRGGSG 115
PRK05733 PRK05733
single-stranded DNA-binding protein; Provisional
 2-97 3.73e-10

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235585 [Multi-domain]  Cd Length: 172  Bit Score: 54.55  E-value: 3.73e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478544097   2 LNKIVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKD----QNNEiACDYLYCKAFGKTASNIEKYTHQGSLVGITGQM 77
Cdd:PRK05733    5 VNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDkqsgQKVE-RTEWHRVSLFGKVAEIAGEYLRKGSQVYIEGKL 83

                          90       100
                  ....*....|....*....|
gi 1478544097  78 RSRKYEKDNQTHFVTELYVE 97
Cdd:PRK05733   84 QTREWEKDGIKRYTTEIVVD 103
PRK08763 PRK08763
single-stranded DNA-binding protein; Provisional
 2-109 9.37e-09

single-stranded DNA-binding protein; Provisional


Pssm-ID: 181549 [Multi-domain]  Cd Length: 164  Bit Score: 50.71  E-value: 9.37e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478544097   2 LNKIVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKDQ--NNEIACDYLYCKAFGKTASNIEKYTHQGSLVGITGQMRS 79
Cdd:PRK08763    5 INKVILVGNLGNDPDIKYTQSGMTITRISLATTSVRKDRegNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEGSIRY 84

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1478544097  80 RKYE-KDNQTHFVTELYVETIKFMSSKAKES 109
Cdd:PRK08763   85 DKFTgQDGQERYVTEIVADEMQMLGGRGEGG 115
PRK06863 PRK06863
single-stranded DNA-binding protein; Provisional
 2-109 1.02e-08

single-stranded DNA-binding protein; Provisional


Pssm-ID: 136097 [Multi-domain]  Cd Length: 168  Bit Score: 50.74  E-value: 1.02e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478544097   2 LNKIVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKDQNN----EIAcDYLYCKAFGKTASNIEKYTHQGSLVGITGQM 77
Cdd:PRK06863    4 INKVIIVGHLGNDPEIRTMPNGEAVANISVATSESWTDKNTgerrEVT-EWHRIVFYRRQAEVAGEYLRKGSQVYVEGRL 82

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1478544097  78 RSRKYEKDN-QTHFVTELYVETIKFMSSKAKES 109
Cdd:PRK06863   83 KTRKWQDQNgQDRYTTEIQGDVLQMLGGRNQRN 115
PRK09010 PRK09010
single-stranded DNA-binding protein; Provisional
 2-96 2.49e-08

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236362 [Multi-domain]  Cd Length: 177  Bit Score: 49.85  E-value: 2.49e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478544097   2 LNKIVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKD-QNNEI--ACDYLYCKAFGKTASNIEKYTHQGSLVGITGQMR 78
Cdd:PRK09010    6 VNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDkQTGEMkeQTEWHRVVLFGKLAEVAGEYLRKGSQVYIEGQLR 85

                          90
                  ....*....|....*....
gi 1478544097  79 SRKYEKDN-QTHFVTELYV 96
Cdd:PRK09010   86 TRKWTDQSgQDRYTTEVVV 104
PRK07459 PRK07459
single-stranded DNA-binding protein; Provisional
 2-119 5.14e-07

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180986  Cd Length: 121  Bit Score: 45.06  E-value: 5.14e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478544097   2 LNKIVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKDQNNeiacDYLYCKAFGKTASNIEKYTHQGSLVGITGqmrSRK 81
Cdd:PRK07459    3 LNSVTLVGRAGRDPEVRYFESGSVVCNLTLAVNRRSRDDEP----DWFNLEIWGKTAQVAADYVKKGSLIGITG---SLK 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1478544097  82 YE--KDNQTHFVTE---LYVETIKFMSSKA--KESNILSNEYDEE 119
Cdd:PRK07459   76 FDrwTDRNTGEDRSkpvIRVDRLELLGSKRdsEGNANPSNSSEIP 120
PRK06341 PRK06341
single-stranded DNA-binding protein; Provisional
 2-94 9.41e-07

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235782 [Multi-domain]  Cd Length: 166  Bit Score: 45.18  E-value: 9.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478544097   2 LNKIVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKDQN----------------NEIACDYlyckafgktasnIEKYT 65
Cdd:PRK06341    5 VNKVILIGNLGADPEIRRTQDGRPIANLRIATSETWRDRNsgerkektewhrvvifNEGLCKV------------AEQYL 72

                          90       100       110
                  ....*....|....*....|....*....|
gi 1478544097  66 HQGSLVGITGQMRSRKYEKDN-QTHFVTEL 94
Cdd:PRK06341   73 KKGAKVYIEGQLQTRKWTDQSgVERYSTEV 102
PRK06642 PRK06642
single-stranded DNA-binding protein; Provisional
 2-97 5.32e-05

single-stranded DNA-binding protein; Provisional


Pssm-ID: 135984  Cd Length: 152  Bit Score: 40.47  E-value: 5.32e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478544097   2 LNKIVIVGRLTKDAQIYEKEDGNKVATFCVATERNYKDQ---NNEIACDYLYCKAFGK-TASNIEKYTHQGSLVGITGQM 77
Cdd:PRK06642    5 LNKVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDRitsERKERTEWHRVVIFSEgLVSVVERYVTKGSKLYIEGSL 84

                          90       100
                  ....*....|....*....|.
gi 1478544097  78 RSRKY-EKDNQTHFVTELYVE 97
Cdd:PRK06642   85 QTRKWnDNSGQEKYTTEVVLQ 105
PRK07772 PRK07772
single-stranded DNA-binding protein; Provisional
 5-99 9.10e-05

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236092 [Multi-domain]  Cd Length: 186  Bit Score: 40.02  E-value: 9.10e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478544097   5 IVIVGRLTKDAQIYEKEDGNKVATFCVA-TERNYKDQNNEIAcD----YLYCKAFGKTASNIEKYTHQGSLVGITGQMRS 79
Cdd:PRK07772    7 ITVVGNLTADPELRFTPSGAAVANFTVAsTPRTFDRQTNEWK-DgealFLRCSIWRQAAENVAESLTKGMRVIVTGRLKQ 85

                          90       100
                  ....*....|....*....|.
gi 1478544097  80 RKYE-KDNQTHFVTELYVETI 99
Cdd:PRK07772   86 RSYEtREGEKRTVVELEVDEI 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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