|
Name |
Accession |
Description |
Interval |
E-value |
| PBP1_SBP-like |
cd06327 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
28-365 |
0e+00 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in gram-negative, gram-positive bacteria, and archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380550 [Multi-domain] Cd Length: 336 Bit Score: 527.91 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGGPGSVAAAQLAIDDcLAAECKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAVA 107
Cdd:cd06327 1 RIGVLTDLSGVYADLSGPGSVEAAKMAVED-FGGKVLGRPIEVVSADHQNKPDVASAIAREWYDRDGVDAIVDVPNSAVA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 108 LAVQGIAREKNKVVMFSGPATTALTNKDCSPVGFHWMFDTYSQSAGGAKATVKAGGKSWYFVTVDYAFGHSLEADTVKAV 187
Cdd:cd06327 80 LAVQKLAKEKKKIAIVTGAGSSDLTGKACSPYGVHWAYDTYALARGTVKALVKQGGKSWFFITADYAFGHSLEADATAAV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 188 KALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGIVEGGQRLVSLLIFLSDLRALGLDS 267
Cdd:cd06327 160 KAAGGKVVGSVRHPLGTTDFSSFLLQAQASGADVIALANAGADLVNAVKQAREFGLTDGGQKLAALLLFITDIHALGLDA 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 268 AQGLSYVDGFYWDHDDDTRAWSARFEKAfRGLKPTMTQAGVYSSVLHYLRAVAATGSTDGKVVADKMRELPIKDPIMRNA 347
Cdd:cd06327 240 AQGLYLTTAFYWDRDDATRAWAKRFFAR-TGKMPTMLQAGVYSAVLHYLKAVKAAGTDDADAVVAKMREMPVNDFFAKNG 318
|
330
....*....|....*...
gi 1478765494 348 AIRPDGRVIHDMYLYEVK 365
Cdd:cd06327 319 RIRADGRVVHDMYLVQVK 336
|
|
| Peripla_BP_6 |
pfam13458 |
Periplasmic binding protein; This family includes a diverse range of periplasmic binding ... |
26-366 |
5.81e-111 |
|
Periplasmic binding protein; This family includes a diverse range of periplasmic binding proteins.
Pssm-ID: 433225 [Multi-domain] Cd Length: 342 Bit Score: 328.85 E-value: 5.81e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 26 PVKIGVLTDMSGTYAgMGGPGSVAAAQLAIDDCLAA-ECKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNS 104
Cdd:pfam13458 1 PIKIGVLTPLSGPYA-SSGKSSRAGARAAIEEINAAgGVNGRKIELVVADDQGDPDVAAAAARRLVDQDGVDAIVGGVSS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 105 AVALAVQGIAREKNKVVMFsgpaTTALTNKDCSPVGFHWMFDTYSQSAGGAKATVKA-GGKSWYFVTVDYAFGHSLEADT 183
Cdd:pfam13458 80 AVALAVAEVLAKKGVPVIG----PAALTGEKCSPYVFSLGPTYSAQATALGRYLAKElGGKKVALIGADYAFGRALAAAA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 184 VKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGIVEGGQRLVSLLIFLSDLRAL 263
Cdd:pfam13458 156 KAAAKAAGGEVVGEVRYPLGTTDFSSQVLQIKASGADAVLLANAGADTVNLLKQAREAGLDAKGIKLVGLGGDEPDLKAL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 264 GLDSAQGLSYVDGFYWDHDDD-TRAWSARFEKAFRGLKPTMTQAGVYSSVLHYLRAVAATGSTDGKVVADKMRELPIKDP 342
Cdd:pfam13458 236 GGDAAEGVYATVPFFPDLDNPaTRAFVAAFAAKYGEAPPTQFAAGGYIAADLLLAALEAAGSPTREAVIAALRALPYDGP 315
|
330 340
....*....|....*....|....
gi 1478765494 343 IMRNAAIRPDGRVIHDMYLYEVKK 366
Cdd:pfam13458 316 FGPVGFRAEDHQAVHCMYLVQVKA 339
|
|
| LivK |
COG0683 |
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid ... |
26-366 |
1.21e-73 |
|
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid transport and metabolism];
Pssm-ID: 440447 [Multi-domain] Cd Length: 314 Bit Score: 232.13 E-value: 1.21e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 26 PVKIGVLTDMSGTYAGMGgPGSVAAAQLAIDDCLAA-ECKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNS 104
Cdd:COG0683 3 PIKIGVLLPLTGPYAALG-QPIKNGAELAVEEINAAgGVLGRKIELVVEDDASDPDTAVAAARKLIDQDKVDAIVGPLSS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 105 AVALAVQGIAREKNKVVMFSGPATTALTNKDCSPVGFHWMFDTYSQSAGGAKATVKA-GGKSWYFVTVDYAFGHSLEADT 183
Cdd:COG0683 82 GVALAVAPVAEEAGVPLISPSATAPALTGPECSPYVFRTAPSDAQQAEALADYLAKKlGAKKVALLYDDYAYGQGLAAAF 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 184 VKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGIvegGQRLVslliflsdlral 263
Cdd:COG0683 162 KAALKAAGGEVVGEEYYPPGTTDFSAQLTKIKAAGPDAVFLAGYGGDAALFIKQAREAGL---KGPLN------------ 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 264 gldsaqglsyvdgfywdhdddtRAWSARFEKAFrGLKPTMTQAGVYSSVLHYLRAVAATGSTDGKVVADKMRELPIKDPI 343
Cdd:COG0683 227 ----------------------KAFVKAYKAKY-GREPSSYAAAGYDAALLLAEAIEKAGSTDREAVRDALEGLKFDGVT 283
|
330 340
....*....|....*....|...
gi 1478765494 344 MRnAAIRPDGRVIHDMYLYEVKK 366
Cdd:COG0683 284 GP-ITFDPDGQGVQPVYIVQVKA 305
|
|
| PBP1_SBP-like |
cd19989 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
28-313 |
2.00e-55 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380644 [Multi-domain] Cd Length: 299 Bit Score: 184.79 E-value: 2.00e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGGPgSVAAAQLAIDDCLAAEC-KGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAV 106
Cdd:cd19989 1 KIGVLTPLSGPYAALGEE-ARRGAQLAVEEINAAGGiLGRPVELVVEDTEGKPATAVQKARKLVEQDGVDFLTGAVSSAV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 107 ALAVQGIAREKNKVVMFSGPATTALTNKDCSPVGFHWMFDTYSQSAGGAKATVKAGGKSWYFVTVDYAFGHSLEADTVKA 186
Cdd:cd19989 80 ALAVAPKAAELKVPYLVTVAADDELTGENCNRYTFRVNTSDRMIARALAPWLAENGGKKWYIVYADYAWGQSSAEAFKEA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 187 VKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGIVEGGQRLVSLLIFLSDLRALGLD 266
Cdd:cd19989 160 IEELGGEVVGTLFAPLGTTDFSSYITQISDSGADGLLLALAGSDAVNFLKQAGQFGLGKKYKIVGGILSIEPLALPALGD 239
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1478765494 267 SAQGLSYVDGFYWDHDDD-TRAWSARFEKAFrGLKPTMTQAGVYSSVL 313
Cdd:cd19989 240 AAEGVYGGVRYPPTLDTPaNRAFVEAYEKEY-GEAPDNFAGEAYEAMQ 286
|
|
| PBP1_ABC_transporter_LIVBP-like |
cd06268 |
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the ... |
28-312 |
1.85e-51 |
|
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily; Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.
Pssm-ID: 380492 [Multi-domain] Cd Length: 298 Bit Score: 174.44 E-value: 1.85e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGmGGPGSVAAAQLAIDDCLAAE-CKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAV 106
Cdd:cd06268 1 KIGVVVPLTGPYAD-YGEEILRGVALAVEEINAAGgINGRKLELVIADDQGDPETAVAVARKLVDDDKVLAVVGHYSSSV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 107 ALAVQGIArEKNKVVMFSGPATTALTNKDCSPVGFHWMFDTYSQSAGGAKATVKAG-GKSWYFVTVDYAFGHSLEADTVK 185
Cdd:cd06268 80 TLAAAPIY-QEAGIPLISPGSTAPELTEGGGPYVFRTVPSDAMQAAALADYLAKKLkGKKVAILYDDYDYGKSLADAFKK 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 186 AVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGIveGGQRLVSLLIFLSDLRALGL 265
Cdd:cd06268 159 ALKALGGEIVAEEDFPLGTTDFSAQLTKIKAAGPDVLFLAGYGADAANALKQARELGL--KLPILGGDGLYSPELLKLGG 236
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1478765494 266 DSAQGLSYVDGFYWDHDDDTRAWSARFEKAFRGLKPTMTQAGVYSSV 312
Cdd:cd06268 237 EAAEGVVVAVPWHPDSPDPPKQAFVKAYKKKYGGPPSWRAATAYDAT 283
|
|
| PBP1_SBP-like |
cd20378 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
28-382 |
5.11e-51 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380668 [Multi-domain] Cd Length: 357 Bit Score: 174.84 E-value: 5.11e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGGPGsVAAAQLAIDDclAAECKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAVA 107
Cdd:cd20378 1 TLGGLVSMSGAFAAAGKLA-DRGMRLAVEE--YGGALGRPLKYITRDTEGKPGTGVRKVQEAIAQDGARFFIGGTLSSVA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 108 LAVQGIArEKNKVVMFSGPATTALTNKDCSPVGFHWMFDTYsqsaGGAKATV--------KAggKSWYFVTVDYAFGHSL 179
Cdd:cd20378 78 LAVSEEA-EKAGGVYITSGGADEITGSRCNRSTFRWSVPTY----GAIRQTVrpvikampKA--KRWYTITPQYVFGESL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 180 EADTVKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGIVEGGQRLVSLLIFLSD 259
Cdd:cd20378 151 LKNAKEVLKEKGIEHVGNSYHSLGEREFSGYLTKAMAARPDVLLILNFGSQAVDALRQAVSFGLKRKMKILVAWSSGLDQ 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 260 LRALGLDSAQGLsYVDGFYWdHDDDT---RAWSARFEKAFrGLKPTMTQAGVYSSVLHYLRAVAATGSTDGKVVADKMRE 336
Cdd:cd20378 231 FQELGPDICEGV-YFGAQYW-HDVDTpanKALVKVYQAKF-KETPSYALAAGYACTRMLLDAIDKAGSTDPAAVIKALEG 307
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1478765494 337 LPIKDPIMRNAAIRPDGRVIHDMYLYEVKKPAESKGGWDYSRLIAT 382
Cdd:cd20378 308 LKYDGITGDEEVRAADHQVLKPYYLLRGKAKAAMKDKDDFADIVSS 353
|
|
| PBP1_As_SBP-like |
cd06330 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
28-360 |
9.78e-51 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic (As) and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Pssm-ID: 380553 [Multi-domain] Cd Length: 342 Bit Score: 173.90 E-value: 9.78e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGGPgSVAAAQLAIDDCLAAE-CKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAV 106
Cdd:cd06330 1 KIGVITPLSGAAAVYGEP-ARNGAELAVEEINAAGgILGRKIELVVRDDKGKPDEAVRAARELVLQEGVDFLIGTISSGV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 107 ALAVQGIAREKNKVVMFSGPATTALTNKDCSPVGFHWMFDTYSQSAGGAK--ATVKAGGKSWYFVTVDYAFGHSLEADTV 184
Cdd:cd06330 80 ALAVAPVAEELKVLFIATDAATDRLTEENFNPYVFRTSPNTYMDAVAAALyaAKKPPDVKRWAGIGPDYEYGRDSWAAFK 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 185 KAVKAL--DGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGIVEGGQRLVSLLIFLSDLRA 262
Cdd:cd06330 160 AALKKLkpDVEVVGELWPKLGATDYTAYITALLAAKPDGVFSSLWGGDLVTFVKQAKPYGLFDKTKVVSGLGGGSEVLQA 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 263 LGLDSAQGLsYVDGFYWDHDDDT---RAWSARFEKAFrGLKPTMTQAGVYSSVLHYLRAVAATGSTDGKVVADKMRELPI 339
Cdd:cd06330 240 LGKEMPEGL-IGGGRYPFGWPDTplnKAFVEAYRAKY-GEYPTYWAYEAYAAVMALKAAIEKAGSTDTDKVIAALEGLTF 317
|
330 340
....*....|....*....|....*
gi 1478765494 340 KDP----IMRnaaiRPDGRVIHDMY 360
Cdd:cd06330 318 DTPggkiTIR----AEDHQAVQPVV 338
|
|
| PBP1_aromatic_compounds-like |
cd06332 |
type 1 periplasmic binding proteins of active transport systems predicted to be involved in ... |
28-364 |
3.27e-43 |
|
type 1 periplasmic binding proteins of active transport systems predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; This group includes the type 1 periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Pssm-ID: 380555 [Multi-domain] Cd Length: 336 Bit Score: 153.91 E-value: 3.27e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGmGGPGSVAAAQLAIDDcLAAECKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAVA 107
Cdd:cd06332 1 KIGLLAPLTGPFAA-LGEDMVRGFELALEE-VGGEVAGRKVELVVEDDAGDPDTAVTKARKLVEQDKVDVLIGPLSGDEG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 108 LAVQGIAREKNKVVMFSGPATTALTNKDCSPVGFHWMFDTYSQSAGGAKATVKAGG-KSWYFVTVDYAFGHSLEADTVKA 186
Cdd:cd06332 79 LAVAPYAKEPGVPFINPVAGADDLTQRAKAPNFFRTSFTGSQWSAPLGDYAYKELGyKKVATIGSDYAFGYEQAAGFKRG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 187 VKALDGTVVGSVRHPLNAPDFASYLLQAQSSkAQVVALANGGQDTVNAVKQAREFGIvEGGQRLVSLLIF--LSDLRALG 264
Cdd:cd06332 159 FEAAGGEVVQEIWVPLGTTDFSPYIAQIPSA-DDAVFAFLGGADAVRFLKQYREFGL-KDKIPLIGGGTTvdESVLPAMG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 265 lDSAQGLSYVDGFYWDHDD-DTRAWSARFEKAFrGLKPTMTQAGVYSSVLHYLRAVAATG--STDGKVVADKMRELPIkD 341
Cdd:cd06332 237 -DAALGIISASHYAEGLDNpENKKFVAAYKKKF-GKLPSLYAAGGYDGAQAILEALEAVGgdVSDKQALAAALRKVKF-D 313
|
330 340
....*....|....*....|...
gi 1478765494 342 PIMRNAAIRPDGRVIHDMYLYEV 364
Cdd:cd06332 314 SPRGPFSFDENRNPVQNVYIREV 336
|
|
| PBP1_SBP-like |
cd19987 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
28-336 |
2.54e-42 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380642 [Multi-domain] Cd Length: 353 Bit Score: 151.71 E-value: 2.54e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGgPGSVAAAQLAID---------DCLAAECK----GMKIELVSADNQNKADVGAARAREWFDRDG 94
Cdd:cd19987 1 TIGLNVPLSGPYAPQG-EDQRRGFELAVDhlnnggglvDKDSRLSGdgilGKKVELVTADTETKADTAVDNAKRLIEQDG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 95 VSAIADLTNSAVALAVQGIArEKNKVVMFSGPAT-TALTNKDCSPVGFHWMFdtYSQSAGGAKATVKA----GGKSWYFV 169
Cdd:cd19987 80 AVMITGGSSSAVAVAAQKLA-QKEGVLYFAGLSHsNDTTGKDCHRYGFRECF--NAHMSAKALAPYLVekfgKDRKYFYL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 170 TVDYAFGHSLEADTVKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGIVEGGQR 249
Cdd:cd19987 157 TADYTWGHSTEQSMREYTEAHGWKTVGNPATPLGETDFSAALLNAADSGADVLVLVLFGRDMVNALKQAKQFGLLKKMDI 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 250 LVSLLIfLSDLRALGLDSAQGLSYVDGFYWDHDDD---TRAWSARFEKAFrGLKPTMTQAGVYSSVLHYLRAVAATGSTD 326
Cdd:cd19987 237 VVPLLT-AFMAESVGPEIMEGVLGTVNWHWSLPDDysyAFGKAEAFEKEY-GAYPSQAAASAYVQVLQYAAAVERAGSFD 314
|
330
....*....|
gi 1478765494 327 GKVVADKMRE 336
Cdd:cd19987 315 PPAVIRALEG 324
|
|
| PBP1_AmiC-like |
cd06331 |
type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system ... |
28-361 |
1.53e-39 |
|
type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF); This group includes the type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Pssm-ID: 380554 [Multi-domain] Cd Length: 333 Bit Score: 143.90 E-value: 1.53e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGgPGSVAAAQLAIDDCLAAE-CKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAV 106
Cdd:cd06331 1 KIGLLTPLSGPASVYG-RAIANGAELAVEEINAAGgVLGRPVELVVEDDASDPATAVAAARRLIQQDKVDAIVGPITSAT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 107 ALAVQGIArEKNKVVMFSgpaTTALTNKDCSPvgfhWMFDTYS----QSAGGAKATVKAGGKSWYFVTVDYAFGHSLEAD 182
Cdd:cd06331 80 RNAVAPVA-ERAKVPLLY---PTFYEGGECSP----YLFCFGEvpnqQLDPLIPWLMEEYGKKFYLIGSDYVWPRTMNDA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 183 TVKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGIVEGGqRLVSLLIFLSDLRA 262
Cdd:cd06331 152 ARRVIEAHGGEVVGEEYLPLGTTDFSSVIEKIKASGADVVLSTLVGADAVTFLKQFAAAGLRRKV-RIAALLFDENTLAG 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 263 LGLDSAQGLSYVDGFYWDHDDD-TRAWSARFEKAFRGLKPTMT--QAGVYSSVLHYLRAVAATGSTDGKVVADKMRELPI 339
Cdd:cd06331 231 LGAEAAEGIYSVLSYFQSLDTPeNKAFVAAYRKKFGEDAPPITslSEAAYEAVHLYAAAVEKAGSTDPEAVIAALPGVSF 310
|
330 340
....*....|....*....|..
gi 1478765494 340 KDPIMRNAAIRPDGRVIHDMYL 361
Cdd:cd06331 311 DGPQGPVTMDPDNHHVRLNLYI 332
|
|
| PBP1_RPA0668_benzoate-like |
cd20014 |
type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the ... |
28-366 |
2.67e-37 |
|
type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the active transport of lignin-derived benzoate derivative compounds, and its close homologs; This group includes RPA0668 from Rhodopseudomonas palustris and its close homologs in other bacteria. Rpa0668 is the periplasmic binding-protein component of an ABC system that is involved in the active transport of lignin-derived benzoate derivative compounds. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380667 [Multi-domain] Cd Length: 346 Bit Score: 138.14 E-value: 2.67e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGGpGSVAAAQLAIDDClAAECKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAVA 107
Cdd:cd20014 1 KIGLLLPYSGVYAALGE-DIRNGFQLYLDEH-GGKLGGRPIELVKEDDEADPDVALQKARKLIEQDKVDVLVGPVSSGVA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 108 LAVQGIAREKNKVVMFSGPATTALTNKDCSPVGFHWMFDTYSQSAGGAKATVKAGGKSWYFVTVDYAFGHSLEADTVKAV 187
Cdd:cd20014 79 LAIRDVVEQAKVPLIVANAGANALTRAACSPYIFRTSFSNWQLGYALGKYAAENVGKTVVTIASDYAAGREVVAGFKEGF 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 188 KALDGTVVGSVRHPL-NAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGIVEGgqrlVSLL--IFLSD---LR 261
Cdd:cd20014 159 EAAGGKVVGEIWTPLgTTTDFSPYLTQIAASGPDAVYAFFAGADAVRFVKQYAEFGLKGK----IPLYgpGFLTDedvLP 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 262 ALGlDSAQGLSYVDGFYWDHD-DDTRAWSARFEKAFRGLKPTMTQAGvYSSVLHYLRAVAATGS--TDGKVVADKMRELP 338
Cdd:cd20014 235 ALG-EAAEGIITVLHYAPTLDnPANRAFVAAYQAKYGRLPDVYAVQG-YDAAQVIDAALEAVGGdtSDKDILAAALELGS 312
|
330 340 350
....*....|....*....|....*....|.
gi 1478765494 339 IKDPimrNAAIRPDGR---VIHDMYLYEVKK 366
Cdd:cd20014 313 IDSP---RGPFRFDPTthnPIQNIYLREVVK 340
|
|
| PBP1_SBP-like |
cd06328 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
28-334 |
1.35e-33 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380551 [Multi-domain] Cd Length: 336 Bit Score: 127.80 E-value: 1.35e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGgPGSVAAAQLAIDDCLAA--ECKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSA 105
Cdd:cd06328 1 KIGVITSLTGPLAAYG-KQTERGFELGLEYATDGtmEVDGRKIEVIVKDDQGDPDTAKAAATELIGDDGVDILVGTVSSA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 106 VALAVQGIArEKNKVVMFSGPA-TTALTNKDCSPVGFHWMFDTYSQSAGGAKATVKAGGKSWYFVTVDYAFGHSLEADTV 184
Cdd:cd06328 80 VALALAPVA-EQNKKILIVGPAaADSITGENWNKYTFRTSRNSWQDAIAGAKALADPLGKSVAFLAQDYAFGQDGVAAFK 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 185 KAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGIVEgGQRLVSLLIFLSDLRALG 264
Cdd:cd06328 159 KALEAKGGKIVGEELVPVTTTDFTPYLQRILDAKPDVLFVAWAGTGALTLWQQLADQGVLD-DIKVVTGGPDIATLAALG 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1478765494 265 lDSAQGLSYVDGFYWD-HDDDTRAWSARFEKAFRGLKPTMTQAGVYSSVLHYLRAVAATGSTDGkvvADKM 334
Cdd:cd06328 238 -DALPGIEGLTYYYYGlPKNPVNDWLVKAHKERYNAPPDLFTAGGFAAAQAVVRALEKAGGDTD---VEKL 304
|
|
| PBP1_SBP-like |
cd06329 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
28-345 |
2.52e-33 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380552 [Multi-domain] Cd Length: 343 Bit Score: 127.39 E-value: 2.52e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGmGGPGSVAAAQLAIDDCLAA-ECKGMKIELVSADNQNKADVGAARAREWFDrDGVSAIADLTNSAV 106
Cdd:cd06329 1 KIAFIDPLSGPFAS-VGEIYLKGLQFAIEEINAGgGLLGRKIELVPFDNKGSPQEALIQLKKAID-QGIRFVLQGNSSAV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 107 ALAVQGIAREKN-----KVVMF--SGPATTALTNKDCSPVGFHWMFDTYSQSAGGAKATVKAG-GKSWYFVTVDYAFGHS 178
Cdd:cd06329 79 AGALIDAIEKHNqrnpdKRVLFlnYGAEAPELTGAKCSFWHFRFDANADMKMAALADYMKKDGsIKKVYLINQDYSFGRD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 179 LEADTVKAVKAL--DGTVVGSVRHPLNAP-DFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGIvegGQRLVSLLI 255
Cdd:cd06329 159 VAAAAKKNLKKKrpDIEIVGEDLHPLGKVkDFSPYIAKIKASGADTVITGNWGNDLTLLMKAARDSGL---KAPFYTYYA 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 256 FLSDLRALGLDSAQGLsYVDGFYWDHDDDTRAWSArFEKAFR---GLKPTMTQAGVYSSVLHYLRAVAATGSTDGKVVAD 332
Cdd:cd06329 236 DGPGAPAAIGEAGVGR-LVAVAYWHPNPKTPELEK-FAEAFRakyGRYPDFNIGRTYMGVEMLAAAIKKAGSTDPEKVAK 313
|
330
....*....|....*..
gi 1478765494 333 KM----RELPIKDPIMR 345
Cdd:cd06329 314 ALeglsFDTPGGPVTMR 330
|
|
| PBP1_alkylbenzenes-like |
cd06360 |
type 1 periplasmic binding component of active transport systems predicted be involved in ... |
28-367 |
1.63e-32 |
|
type 1 periplasmic binding component of active transport systems predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; This group includes the type 1 periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Pssm-ID: 380583 [Multi-domain] Cd Length: 357 Bit Score: 125.49 E-value: 1.63e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGgPGSVAAAQLAIDDcLAAECKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAVA 107
Cdd:cd06360 1 KIGVLLPLTGPLAVNG-EDVRDGFELYFDE-IGNQVAGRKIELIVEDDEGKPDVGLTKARKLVERDKVHVLAGIVSSAVA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 108 LAVQGIAREKNKVVMFSGPATTALTNKDCSPVGFHWMFDTYSQSAGGAKATVKAGG-KSWYFVTVDYAFGHSLEADTVKA 186
Cdd:cd06360 79 YAVRDYVVEQKIPLVISNAGAAPLTQELASPYIFRTSFSNGQYDAPFGQYAYEKLGyRRIAVMASDYAAGHEQAGAFART 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 187 VKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGiVEGGQRLV--SLLIFLSDLRALG 264
Cdd:cd06360 159 FKQAGGKVVQEIYPPLGTADFAPYLARIQQDAADAVWAFFAGADAIRFVKQYDEYG-LKGKLPLVgiGGLVDDAILPEQG 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 265 lDSAQGLsyVDGFYWDHDDDT---RAWSARFEKAFRGLkPTMTQAGVYSSVlhylRAVA-ATGSTDGKV-----VADKMR 335
Cdd:cd06360 238 -DAALGI--VSYLHYSAALDTpenKAFVQAYRKKYGRD-PGLYAEGGYVAA----RAIAeALEAVKGNVedkeaFLEALR 309
|
330 340 350
....*....|....*....|....*....|....
gi 1478765494 336 ELPIKDPImrnAAIR--PDGRVIHDMYLYEVKKP 367
Cdd:cd06360 310 KVRFEAPR---GPFRfdPYQQAVVTTYIRRVEKV 340
|
|
| PBP1_ABC_ligand_binding-like |
cd19980 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
28-336 |
1.12e-31 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380635 [Multi-domain] Cd Length: 334 Bit Score: 122.72 E-value: 1.12e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTyAGMGGPGSVAAAQLAIDDCLAAE-CKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAV 106
Cdd:cd19980 1 KIGVIAPLSGP-VAALGQQVLNGAKLAVEEINAKGgVLGRKLELVVEDDKCPPAEGVAAAKKLITDDKVPAIIGAWCSSV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 107 ALAVQGIArEKNKVVMFSGPATTA-LTNKdcspvGFHWMFDTYSQSAGGAKATVK-----AGGKSWYFVTVDYAFGHSLE 180
Cdd:cd19980 80 TLAVMPVA-ERAKVPLVVEISSAPkITEG-----GNPYVFRLNPTNSMLAKAFAKyladkGKPKKVAFLAENDDYGRGAA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 181 ADTVKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGIvegGQRLVSLLIFLS-D 259
Cdd:cd19980 154 EAFKKALKAKGVKVVATEYFDQGQTDFTTQLTKLKAANPDAIFVVAETEDGALILKQARELGL---KQQLVGTGGTTSpD 230
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1478765494 260 LRALGLDSAQGLSYVDGFYWDHDDDT-RAWSARFEKAFrGLKPTMTQAGVYSSVLHYLRAVAATGSTDGKVVADKMRE 336
Cdd:cd19980 231 LIKLAGDAAEGVYGASIYAPTADNPAnKAFVAAYKKKY-GEPPDKFAALGYDAVMVIAEAIKKAGSTDPEKIRAAALK 307
|
|
| PBP1_ABC_ligand_binding-like |
cd06340 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
28-333 |
2.97e-31 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380563 [Multi-domain] Cd Length: 352 Bit Score: 121.90 E-value: 2.97e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGGPgSVAAAQLAIDDCLAAE----CKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTN 103
Cdd:cd06340 1 KIGVLYPLSGPLALIGQE-AKRGAELAVDEINAAGgiksLGGAKIELVVADTQSDPEVAASEAERLITQEGVVAIIGAYS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 104 SAVALAVQGIArEKNKVVMFSGPAT-TALTNKdcspvGFHWMF------DTYSQSAGG-AKATVKAGGKSWYFVTV---D 172
Cdd:cd06340 80 SSVTLAASQVA-ERYGVPFVTASAVaDEITER-----GFKYVFrtaptaSQFAEDAVDfLKELAKKKGKKIKKVAIiyeD 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 173 YAFGHSLEADTVKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFG-----IVEGG 247
Cdd:cd06340 154 SAFGTSVAKGLKKAAKKAGLEVVLDEPYPAGATDLSSEVLKLKAAKPDVVFATSYTNDAILLLRTMKELGfkpkaIIGVG 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 248 QrlvslLIFLSDLRALGLDSAQGLSYVDGFYWDHDDDtRAWSARFEKAFR---GLKPTMTQAGVYSSVLHYLRAVAATGS 324
Cdd:cd06340 234 G-----GYSDPEFLKALGKDAEGVFSVVPWSPDLAKK-KPGAKEVNERYKkkyGEDMTGHAARAYTAAWVLADALERAGS 307
|
....*....
gi 1478765494 325 TDGKVVADK 333
Cdd:cd06340 308 TDPEAIRAA 316
|
|
| PBP1_ABC_LivK_ligand_binding-like |
cd06347 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
28-337 |
2.06e-30 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380570 [Multi-domain] Cd Length: 334 Bit Score: 119.18 E-value: 2.06e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGGPgSVAAAQLAIDDCLAA-ECKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAV 106
Cdd:cd06347 1 KIGVIGPLTGEAAAYGQP-ALNGAELAVDEINAAgGILGKKIELIVYDNKSDPTEAANAAQKLIDEDKVVAIIGPVTSSI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 107 ALAVQGIArEKNKVVMFSGPATTALTnkdcsPVGFHWMF-----DTYsQSAGGAKATVKAGGKS----WYFVTVDYAFGH 177
Cdd:cd06347 80 ALAAAPIA-QKAKIPMITPSATNPLV-----TKGGDYIFracftDPF-QGAALAKFAYEELGAKkaavLYDVSSDYSKGL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 178 sleADT-VKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGIVeggqrlvslLIF 256
Cdd:cd06347 153 ---AKAfKEAFEKLGGEIVAEETYTSGDTDFSAQLTKIKAANPDVIFLPGYYEEAALIIKQARELGIT---------API 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 257 LS-------DLRALGLDSAQGLSYVDGFywdHDDDTRAWSARFEKAFR---GLKPTMTQAGVYSSVLHYLRAVAATGSTD 326
Cdd:cd06347 221 LGgdgwdspELLELGGDAVEGVYFTTHF---SPDDPSPEVQEFVKAYKakyGEPPNAFAALGYDAVMLLADAIKRAGSTD 297
|
330
....*....|.
gi 1478765494 327 GKVVADKMREL 337
Cdd:cd06347 298 PEAIRDALAKT 308
|
|
| PBP1_ABC_ligand_binding-like |
cd06346 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
28-296 |
1.39e-28 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380569 [Multi-domain] Cd Length: 314 Bit Score: 113.81 E-value: 1.39e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGgPGSVAAAQLAIDDCLAA-ECKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAV 106
Cdd:cd06346 1 KIGALLPLTGPLASLG-PPMLAAAELAVEEINAAgGVLGKKVELVVEDSQTDPTAAVDAARKLVDVEGVPAIVGAASSGV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 107 ALAVQGIAREkNKVVMFSGPATT-ALTNKDcsPVGFHWMF---DTYsQSAGGAKATVKAGGKSWYFVTVDYAFGHSLEAD 182
Cdd:cd06346 80 TLAVASVAVP-NGVVQISPSSTSpALTTLE--DKGYVFRTapsDAL-QGVVLAQLAAERGFKKVAVIYVNNDYGQGLADA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 183 TVKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGiveggqrLVSLLIFLSD-LR 261
Cdd:cd06346 156 FKKAFEALGGTVTASVPYEPGQTSYRAELAQAAAGGPDALVLIGYPEDGATILREALELG-------LDFTPWIGTDgLK 228
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1478765494 262 ALGLDSAQGLSYVDGFYW-----DHDDDTRAWSARFEKAF 296
Cdd:cd06346 229 SDDLVEAAGAEALEGMLGtapgsPGSPAYEAFAAAYKAEY 268
|
|
| PBP1_ABC_ligand_binding-like |
cd06345 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
28-334 |
1.34e-27 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380568 [Multi-domain] Cd Length: 356 Bit Score: 111.97 E-value: 1.34e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYagmgGPGSVAAAQLAIDDCLAA-ECKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAV 106
Cdd:cd06345 1 KIGVLGPLSAPA----GEAMERGAELAVEEINAAgGILGRKVELVVADTQGKPEDGVAAAERLITEDKVDAIVGGFRSEV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 107 ALAVQGIAREKNKVVMFSGPATTALTNKDCS-PVGFHWMFDTY-------SQSAGGAKATV--KAGGKSWYFVTVDYAFG 176
Cdd:cd06345 77 VLAAMEVAAEYKVPFIVTGAASPAITKKVKKdYEKYKYVFRVGpnnsylgATVAEFLKDLLveKLGFKKVAILAEDAAWG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 177 HSLEADTVKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQARE-------FGIVEGGQR 249
Cdd:cd06345 157 RGIAEALKKLLPEAGLEVVGVERFPTGTTDFTPILSKIKASGADVIVTIFSGPGGILLVKQWAElgvpaplVGINVPAQD 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 250 LVslliFLSDLralgLDSAQGLSYVDgFYWDH---DDDTRAWSARFEKAFrGLKPTMTQAGVYSSVLHYLRAVAATGSTD 326
Cdd:cd06345 237 PE----FWENT----GGAGEYEITLA-FAAPKakvTPKTKPFVDAYKKKY-GEAPNYTAYTAYDAIYILAEAIERAGSTD 306
|
....*...
gi 1478765494 327 GKVVADKM 334
Cdd:cd06345 307 PDALVKAL 314
|
|
| PBP1_RPA0985_benzoate-like |
cd20013 |
type 1 periplasmic binding-protein component of an ABC system (RPA0985), involved in the ... |
28-385 |
4.51e-27 |
|
type 1 periplasmic binding-protein component of an ABC system (RPA0985), involved in the active transport of lignin-derived benzoate derivative compounds, and its close homologs; This group includes RPA0985 from Rhodopseudomonas palustris and its close homologs in other bacteria. Rpa0985 is the periplasmic binding-protein component of an ABC system that is involved in the active transport of lignin-derived benzoate derivative compounds. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380666 [Multi-domain] Cd Length: 356 Bit Score: 110.42 E-value: 4.51e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGgpgsvAAAQLAIDDCLA---AECKGMKIELVSADNQ-NKADVGAARAREWFDRDGVSAIADLTN 103
Cdd:cd20013 1 KVGVIGPFSGPFADYG-----KQFDRGIDLYLKlhgDKVGGRKVEVIYRDDGgPNPAVAKRLAQELIVRDKVQILIGFGF 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 104 SAVALAVQGIAREKNKVVMFSGPATTALTNKdcSP----VGFhwmfdTYSQSAG-GAKATVKAGGKSWYFVTVDYAFGHS 178
Cdd:cd20013 76 TPNALAVAPVATEAKTPTVIMNAATSSITRK--SPyfvrTSF-----TMWQVAYpMGKWAAKNGIKKAYTAVADYAPGHD 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 179 LEADTVKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVV-ALANGGQDTVNAVKQAREFGIVEGGQRLVSL--LI 255
Cdd:cd20013 149 AETAFKKAFEAAGGKIVGSIRVPLATPDFAPFMQRIKDAKPDAVfVFVPAGAPSIGFLKAYAERGLKEAGIKLLGTgdAT 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 256 FLSDLRALGlDSAQGLSYVDGFYWDHDDD-TRAWSARFEKAF-RGLKPTMTQAGVYSSVLHYLRAVAAT-GSTDGKVVAD 332
Cdd:cd20013 229 DDDDLPAMG-DAALGLITAGHYSAALDSPeNKAFVAAYQKAYgPDARPDFMAVAAYDGMALIYKMIKATgGKFDGDKAMA 307
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1478765494 333 KMRELPIKDPimRNA-AIRPDGR-VIHDMYLYEVKKpaesKGGWDYSRLIATIPA 385
Cdd:cd20013 308 AVKGLKWESP--RGPiSIDPETRdIVQNVYIRRVEK----VDGKLQNVEFDTFEA 356
|
|
| PBP1_ABC_ligand_binding-like |
cd06338 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
28-340 |
3.52e-26 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380561 [Multi-domain] Cd Length: 347 Bit Score: 107.67 E-value: 3.52e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGGPgSVAAAQLAIDD-----CLAAECKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLT 102
Cdd:cd06338 1 KIGASLSLTGPFAGEGKA-QKRGYELWVEDvnaagGVKGGGKKRPVELVYYDDQSDPATAVRLYEKLITEDKVDLLLGPY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 103 NSAVALAVQGIArEKNKVVMFSGPA-TTALTNKdcspvGFHWMFDTYSQSAGGAKATVK------AGGKSWYFVTVDYAF 175
Cdd:cd06338 80 SSGLTLAAAPVA-EKYGIPMIAGGAaSDSIFER-----GYKYVFGVLPPASDYAKGLLDllaelgPKPKTVAIVYEDDPF 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 176 GHSLEADTVKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGI---VEGGQRLVS 252
Cdd:cd06338 154 GKEVAEGAREAAKKAGLEVVYDESYPPGTTDFSPLLTKVKAANPDILLVGGYPPDAITLVRQMKELGYnpkAFFLTVGPA 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 253 LLIFlsdLRALGlDSAQGL----SYVDGFYWDHDDDTRAWSARFEKAFrGLKPTMTQAGVYSSVLHYLRAVAATGSTDGK 328
Cdd:cd06338 234 FPAF---REALG-KDAEGVlgpsQWEPSLPYKVFPGAKEFVKAYKEKF-GEEPSYHAAAAYAAGQVLQQAIEKAGSLDPE 308
|
330
....*....|..
gi 1478765494 329 VVADKMRELPIK 340
Cdd:cd06338 309 KVRDALASLDFD 320
|
|
| PBP1_ABC_HAAT-like |
cd06349 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
28-365 |
1.58e-23 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380572 [Multi-domain] Cd Length: 338 Bit Score: 100.34 E-value: 1.58e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGgPGSVAAAQLAIDDCLAA-ECKGMKIELVSADNQNKADVGAARAREWFDRDGVSA-IADLTnSA 105
Cdd:cd06349 1 KIGVSGPLTGDNAEYG-QQFKNGVELAVDEINAAgGVNGRKLELVVYDDQGDPKEAVNIAQKFVSDDKVVAvIGDFS-SS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 106 VALAVQGIArEKNKVVMFSGPATTALTNKdcspvGFHWMF-DTYSQSAGG---AKATVKA-GGKSWYFVTVDYAFGHSLE 180
Cdd:cd06349 79 CSMAAAPIY-EEAGLVQISPTASHPDFTK-----GGDYVFrNSPTQAVEApflADYAVKKlGAKKIAIIYLNTDWGVSAA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 181 ADTVKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGIveGGQRLVSLLIFLSDL 260
Cdd:cd06349 153 DAFKKAAKALGGEIVATEAYLPGTKDFSAQITKIKNANPDAIYLAAYYNDAALIAKQARQLGW--DVQIFGSSSLYSPEF 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 261 RALGLDSAQGLSYVDGFYWDHDD-DTRAWSARFEKAFrGLKPTMTQAGVYSSVlHYLRAVAATGSTDGKVVADKMRELPI 339
Cdd:cd06349 231 IELAGDAAEGVYLSSPFFPESPDpEVKEFVKAYKAKY-GEDPDDFAARAYDAV-NILAEAIEKAGTDREAIRDALANIKD 308
|
330 340
....*....|....*....|....*.
gi 1478765494 340 KDPIMRNAAIRPDGRVIHDMYLYEVK 365
Cdd:cd06349 309 FSGLTGTITFDENGDVLKSLTILVVK 334
|
|
| PBP1_ABC_ligand_binding-like |
cd06336 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
28-344 |
1.64e-22 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380559 [Multi-domain] Cd Length: 345 Bit Score: 97.30 E-value: 1.64e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGGPGsVAAAQLAIDDCLAA---ECKG--MKIELVSADNQNKADVGAARAREWFDRDGVSAIADLT 102
Cdd:cd06336 1 KIGFLGPLSGPAAAWGLPM-LRGLELAADEINAAggiKVGGkkYKVEVVSYDDKYTPAEAVAAARRLVSQDGVKFIFGPG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 103 NSAVALAVQGIArEKNKVVMFSGPATTALTNKDcSPVGFHwMFDTYSQSAGG--AKATVKAGGKSWYFVTVDYAFGHSLE 180
Cdd:cd06336 80 GSAIAAAVQPVT-ERNKVLLLTAAFSDPILGPD-NPLLFR-IPPTPYEYAPPfiKWLKKNGPIKTVALIAPNDATGKDWA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 181 ADTVKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALanGGQDTVNA---VKQAREFG-----IVEGGQRLVS 252
Cdd:cd06336 157 AAFVAAWKAAGGEVVAEEFYDRGTTDFYPVLTKILALKPDALDL--GGSSPGPAgliIKQARELGfkgpfVSEGGAKADE 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 253 LLIflsdlrALGLDSAQGlsYVDGFYWDHD----DDTRAWSARFEKAFrGLKPTMTQAGVYSSVLHYLRAVAATGSTDG- 327
Cdd:cd06336 235 ILK------EVGGEAAEG--FIGVLPADDDpiasPGAKAFVERYKKKY-GEPPNSESALFYDAAYILVKAMEKAGTVDDt 305
|
330
....*....|....*..
gi 1478765494 328 KVVADKMRELPIKDPIM 344
Cdd:cd06336 306 KKIRAALAMLSPDETLF 322
|
|
| PBP1_Nba-like |
cd06359 |
type 1 periplasmic binding component of active transport systems predicted to be involved in ... |
28-364 |
5.68e-22 |
|
type 1 periplasmic binding component of active transport systems predicted to be involved in 2-nitrobenzoic acid degradation pathway; This group includes the type 1 periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Pssm-ID: 380582 [Multi-domain] Cd Length: 333 Bit Score: 95.78 E-value: 5.68e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTyAGMGGPGSVAAAQLAIDDcLAAECKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAVA 107
Cdd:cd06359 1 KIGFITTLSGP-AAVLGQDMRDGFNLALEQ-LGGKLGGLPVEVVVEDDQLKPDVAKQAAERLIERDKVDFVTGIIFSNVM 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 108 LAVQGIAREKNKVVMFSGPATTALTNKDCSPVGF--HWMFDTYSQSAGgaKATVKAGGKSWYFVTVDYAFGHsleaDTVK 185
Cdd:cd06359 79 LAVVKPVVDSKVFYISANAGPSDLAGKGCNPNFFvtSWQNDQLHEAAG--KYANDKGYKRVYLLAPNYQAGK----DALA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 186 AVK-ALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGIVEGGQRLVSLLIFLSDLRALG 264
Cdd:cd06359 153 GFKrTYKGEVVGEIYTPLGQLDFSAELAQIRAAKPDAVFAFYPGGMGVNFVKQYAQAGLKKKIPLYTVGTLDDEDLLPAM 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 265 LDSAQGLSYVDgfYWDHDDDT---RAWSARFEKAFrGLKPTMTQAGVYSSVLHYLRAVAATGS--TDGKVVADKMRELPI 339
Cdd:cd06359 233 GDAALGVLSVS--QWSPDLDNpenKRFVAAFRKKY-GRPPSNYAAQGYDAALLIDAAVKAVGGdlSDKDALRAALRKADF 309
|
330 340
....*....|....*....|....*.
gi 1478765494 340 KDPimRNA-AIRPDGRVIHDMYLYEV 364
Cdd:cd06359 310 KSV--RGAfRFNNNQFPIQDFYLREV 333
|
|
| PBP1_ABC_ligand_binding-like |
cd06343 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
27-303 |
1.72e-21 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Pssm-ID: 380566 [Multi-domain] Cd Length: 355 Bit Score: 94.56 E-value: 1.72e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 27 VKIGVLTDMSGTYAGMGGPGsVAAAQLAIDDCLAA-ECKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSA 105
Cdd:cd06343 7 IKIGTSLPLSGPAAAYGKPV-RAGAAAYFDEVNAAgGINGRKIELIVEDDGYDPARAVAAVRKLVEQDKVFAIVGGLGTP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 106 VALAVQGIAREKNKVVMFSGPATTALTNKDcSPVGFHWMFDTYSQSAGGAKATVK-AGGKSWYFVTVDYAFGHSLEADTV 184
Cdd:cd06343 86 TNLAVRPYLNEAGVPQLFPATGASALSPPP-KPYTFGVQPSYEDEGRILADYIVEtLPAAKVAVLYQNDDFGKDGLEGLK 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 185 KAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFG----IVeggqrLVSLLIFLSDL 260
Cdd:cd06343 165 EALKAYGLEVVAEETYEPGDTDFSSQVLKLKAAGADVVVLGTLPKEAAAALKEAAKLGwkptFL-----GSSVSADPTTL 239
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1478765494 261 RALGLDSAQGL---SYVDGFYWDHDDDTRAWSARFEKAFRGLKPTM 303
Cdd:cd06343 240 AKAGGDAAEGVysaSYLKDPTDADDPAVKEFREAYKKYFPDDPPNA 285
|
|
| PBP1_ABC_ligand_binding-like |
cd19984 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
28-312 |
7.74e-21 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380639 [Multi-domain] Cd Length: 296 Bit Score: 91.90 E-value: 7.74e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGGPgSVAAAQLAIDDCLAA-ECKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAV 106
Cdd:cd19984 1 KIGVILPLTGDAASYGED-MKNGIELAVEEINAAgGINGKKIELIYEDSKCDPKKAVSAANKLINVDKVKAIIGGVCSSE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 107 ALAVQGIArEKNKVVMFSgPATTALTNKDCSPVGF-HWMFDTYsQSAGGAKATVKAGGKSWYFVTVDYAFGHSLEADTVK 185
Cdd:cd19984 80 TLAIAPIA-EQNKVVLIS-PGASSPEITKAGDYIFrNYPSDAY-QGKVLAEFAYNKLYKKVAILYENNDYGVGLKDVFKK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 186 AVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGIVegGQRLVSLLIFLSDLRALGL 265
Cdd:cd19984 157 EFEELGGKIVASESFEQGETDFRTQLTKIKAANPDAIFLPGYPKEGGLILKQAKELGIK--APILGSDGFEDPELLEIAG 234
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1478765494 266 DSAQGLSYVDGFYwDHDDDTRAWSARFEKAFR-GLKPTMTQAGVYSSV 312
Cdd:cd19984 235 EAAEGVIFTYPAF-DDSSEKKQKFFFYRYKEKyGKEPDIYAALAYDAV 281
|
|
| PBP1_ABC_ligand_binding-like |
cd06335 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
28-332 |
2.19e-20 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380558 [Multi-domain] Cd Length: 348 Bit Score: 91.52 E-value: 2.19e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGgPGSVAAAQLAIDDCLAAE-CKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAV 106
Cdd:cd06335 1 KIGVIGPLTGPSAELG-ESARRGVELAVEEINAAGgILGRKIELVERDDEANPTKAVQNAQELIDKEKVVAIIGPTNSGV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 107 ALAVQGIAREKNKVVMFSGPATTALTNKDcsPVGFHWMF-----DTYsQSAGGAKATVKAGGKSWYFVTVDYAFGHSLEA 181
Cdd:cd06335 80 ALATIPILQEAKIPLIIPVATGTAITKPP--AKPRNYIFrvaasDTL-QADFLVDYAVKKGFKKIAILHDTTGYGQGGLK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 182 DTVKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKqARE---FGIVEGGQRLVSLLIFLS 258
Cdd:cd06335 157 DVEAALKKRGITPVATESFKIGDTDMTPQLLKAKDAGADVILVYGLGPDLAQILK-AMEklgWKVPLVGSWGLSMPNFIE 235
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1478765494 259 dlraLGLDSAQGLSYVDGFYWDH-DDDTRAWSARFEKAFRGLKPTM--TQAGVYSSVLHYLRAVAATGSTDGKVVAD 332
Cdd:cd06335 236 ----LAGPLAEGTIMTQTFIEDYlTPRAKKFIDAYKKKYGTDRIPSpvSAAQGYDAVYLLAAAIKQAGSTDGKKIRA 308
|
|
| PBP1_ABC_HAAT-like |
cd19988 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
28-312 |
2.10e-19 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380643 [Multi-domain] Cd Length: 302 Bit Score: 87.72 E-value: 2.10e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGGpGSVAAAQLAIDDCLAAE-CKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAV 106
Cdd:cd19988 1 KIGVFGPLSGDAAPYGQ-AMLQGAELAVEEINAAGgILGIPIELVVEDDEGLPAASVSAAKKLIYQDKVWAIIGSINSSC 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 107 ALAVQGIArEKNKVVMFsgpaTTALTNKDCSPVGFHWMFDTYSQSAGGAKATV-----KAGGKSWYFVTVDYAFGHSLEA 181
Cdd:cd19988 80 TLAAIRVA-LKAGVPQI----NPGSSAPTITESGNPWVFRCTPDDRQQAYALVdyafeKLKVTKIAVLYVNDDYGRGGID 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 182 DTVKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGI---VEGGQRLVSLLIFls 258
Cdd:cd19988 155 AFKDAAKKYGIEVVVEESYNRGDKDFSPQLEKIKDSGAQAIVMWGQYTEGALIAKQARELGLkqpLFGSDGLVTPKFI-- 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1478765494 259 dlrALGLDSAQGLSYVDGFYWDHDDDTR-AWSARFEKAFrGLKPTMTQAGVYSSV 312
Cdd:cd19988 233 ---ELAGDAAEGAIATTPFLPDSDDPKVsAFVEKYKKRY-GEEPDVFAAQAYDAM 283
|
|
| PBP1_ABC_HAAT-like |
cd19981 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
28-312 |
2.28e-19 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380636 [Multi-domain] Cd Length: 297 Bit Score: 87.73 E-value: 2.28e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGmGGPGSVAAAQLAIDDCLAAE-CKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAV 106
Cdd:cd19981 1 KIGFFAPLTGPAAA-DGKSALHGAELAVEQINAAGgINGKKVELVVYDDQASPKQAVNIAQKLIEQDKVVAVVSGSYSGP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 107 ALAVQGIAREKnKVVMFSGPATTALTNKDCSPVgFHWMFDTYSQSAGGAKATVKAGG-KSWYFVTVDYAFGHSLEADTVK 185
Cdd:cd19981 80 TRAAAPIFQEA-KVPMVSAYAVHPDITKAGDYV-FRVAFLGPVQGRAGAEYAVKDLGaKKVAILTIDNDFGKSLAAGFKE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 186 AVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGI---VEGGQRLVSlliflSDLRA 262
Cdd:cd19981 158 EAKKLGAEIVSEYAYALGDRDFRPILTKIKSANPDAIYASGYYAEAAPIVKQARELGIkvpIIGQEGYDS-----PKFIE 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1478765494 263 LGLDSAQGLSYVDGFYWDHDD-DTRAWSARFEKAFrGLKPTMTQAGVYSSV 312
Cdd:cd19981 233 IAGSAAEGVIITTSLNRDSDRpITQKFIKEYRKRY-GIDPDMVAASTYDAV 282
|
|
| PBP1_ABC_HAAT-like |
cd19986 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
28-312 |
2.41e-19 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380641 [Multi-domain] Cd Length: 297 Bit Score: 87.68 E-value: 2.41e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGGPgSVAAAQLAIDDCLAAE-CKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAV 106
Cdd:cd19986 1 KIGVVAPLTGPAALNGEY-QKNGAQLALEEINAAGgVLGRPLELVVEDDQGTNTGAVNAVNKLISDDKVVAVIGPHYSTQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 107 ALAVQGIAREkNKVVMFSGPATTALTNKDCSpvgfhWMFDTYSQSAGGAKATVKA-----GGKSWYFVTVDYAFGHSLEA 181
Cdd:cd19986 80 VLAVSPLVKE-AKIPVITGGTSPKLTEQGNP-----YMFRIRPSDSVSAKALAKYaveelGAKKIAILYDNDDFGTGGAD 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 182 DTVKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGI---VEGgqrlvSLLIFLS 258
Cdd:cd19986 154 VVTAALKALGLEPVAVESYNTGDKDFTAQLLKLKNSGADVIIAWGHDAEAALIARQIRQLGLdvpVIG-----SSSFATP 228
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1478765494 259 DLRALGLDSAQGLSYVDGFYWDHDDDTR-AWSARFEKAFrGLKPTMTQAGVYSSV 312
Cdd:cd19986 229 TVLLLAGEALEGIYSVTDFVPSDPDPKVqAFVKKYKAKY-GEDPDLYSAWYYDAM 282
|
|
| PBP1_ABC_HAAT-like |
cd06348 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
28-366 |
2.34e-18 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380571 [Multi-domain] Cd Length: 342 Bit Score: 85.36 E-value: 2.34e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGgPGSVAAAQLAIDDCLAA-ECKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAV 106
Cdd:cd06348 1 KIGVALSLTGPGALYG-QSQKNGAQLAVEEINAAgGVGGVKIELIVEDTAGDPEQAINAFQKLINQDKVLAILGPTLSSE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 107 ALAVQGIAREKNKVVMfsGPATTAltnKDCSPVGfHWMFDTYSQSAGGAKATVKA-----GGKSwyfVTVDYAFGHSLEA 181
Cdd:cd06348 80 AFAADPIAQQAKVPVV--GISNTA---PGITDIG-PYIFRNSLPEDKVIPPTVKAakkkyGIKK---VAVLYDQDDAFTV 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 182 DTVK----AVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGI---VEGGQRLVSll 254
Cdd:cd06348 151 SGTKvfpaALKKNGVEVLDTETFQTGDTDFSAQLTKIKALNPDAIVISALAQEGALIVKQARELGLkgpIVGGNGFNS-- 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 255 iflSDLRALGLDSAQGLSYVDGFYWDHDDD-TRAWSARFEKAFrGLKPTMTQAGVYSSVLHYLRAVAATGSTDG--KVVA 331
Cdd:cd06348 229 ---PDLIKLAGKAAEGVIVGSAWSPDNPDPkNQAFVAAYKEKY-GKEPDQFAAQAYDAAYILAEAIKKAGSTTDraDLRD 304
|
330 340 350
....*....|....*....|....*....|....*..
gi 1478765494 332 DKMRELPIKDP--IMRNAAIRPDGRVIHDMYLYEVKK 366
Cdd:cd06348 305 ALARILIAKDFegPLGPFSFDADRDGIQPPVVLIVKD 341
|
|
| PBP1_ABC_LIVBP-like |
cd06342 |
type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active ... |
28-340 |
1.32e-17 |
|
type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); This subgroup includes the type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Pssm-ID: 380565 [Multi-domain] Cd Length: 334 Bit Score: 82.96 E-value: 1.32e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGGPGsVAAAQLAIDDCLAAEC-KGMKIELVSADNQNKADVGAARAREwFDRDGVSAIADLTNSAV 106
Cdd:cd06342 1 KIGVAGPLTGPNAALGQDI-RNGAELAVDEINAKGGgLGFKIELVAQDDACDPAQAVAAAQK-LVADGVVAVIGHYNSGA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 107 ALAVQGIArEKNKVVMFSgPATTA--LTNKdcspvGFHWMF-----DTYsQSAGGAKATVK-AGGKSWYFVTVDYAFGHS 178
Cdd:cd06342 79 AIAAAPIY-AEAGIPMIS-PSATNpkLTEQ-----GYKNFFrvvgtDDQ-QGPAAADYAAKtLKAKRVAVIHDGTAYGKG 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 179 LEADTVKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGIveGGQRLVSLLIFLS 258
Cdd:cd06342 151 LADAFKKALKALGGTVVGREGITPGTTDFSALLTKIKAANPDAVYFGGYYPEAGLLLRQLREAGL--KAPFMGGDGIVSP 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 259 DLRALGLDSAQG-LSYVDGFYWDHDDDTRAWSARFEKAFRglkptmTQAGVYSsVLHY------LRAVAATGSTDGKVVA 331
Cdd:cd06342 229 DFIKAAGDAAEGvYATTPGAPPEKLPAAKAFLKAYKAKFG------EPPGAYA-AYAYdaaqvlLAAIEKAGSTDRAAVA 301
|
....*....
gi 1478765494 332 DKMRELPIK 340
Cdd:cd06342 302 AALRATDFD 310
|
|
| PBP1_NHase |
cd06358 |
type 1 periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively ... |
28-361 |
4.41e-16 |
|
type 1 periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides; This group includes the type 1 periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified into two subgroups: ferric NHases and cobalt NHases.
Pssm-ID: 380581 [Multi-domain] Cd Length: 333 Bit Score: 78.40 E-value: 4.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTyAGMGGPGSVAAAQLAIDDCLAAE-CKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAV 106
Cdd:cd06358 1 RIGLLIPLSGP-AGLWGPSCEACAELAAAEINAAGgILGREVELVLIDAGGPPAEVAAAARRLVDDGAVDAIVGMHTSAV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 107 ALAVQGIAreKNKVVMF-----------SGPATTALTNKDCSPVGFHWMFDTYsqsaggakatvkaGGKSWYFVTVDYAF 175
Cdd:cd06358 80 RQALANAV--GGRVPYVytplyeggertPGVYAIGETPEEQLRPALRWLADER-------------RVRRWFLVGNDYVW 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 176 GHSLEADTVKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGIVEGGQRLvSLLI 255
Cdd:cd06358 145 PRASHAAARRYIARLGGEVVGERFVPLGEDDFERVLARIRASRPDAVLISLVGQDAVDFNRAFAAAGLAGRILRL-SPAI 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 256 FLSDLRALGLDSAQGLsYVDGFYWD--HDDDTRAWSARFEKAFRGLKPTMTQAG--VYSSVLHYLRAVAATGSTDGKVVA 331
Cdd:cd06358 224 DENVLLAIGADATENL-YSASGYFAslRTAANLAFLERYHAAFGDRAPPLNALGesCYEGVHFLAALARRAGSLDVRALA 302
|
330 340 350
....*....|....*....|....*....|
gi 1478765494 332 DKMRELPIKDPimRNAAIRPDGRVIHDMYL 361
Cdd:cd06358 303 AAAEGLTYESP--RGAVTLRGRHARQPVYL 330
|
|
| PBP1_ABC_RPA1789-like |
cd06333 |
type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, ... |
28-243 |
1.27e-14 |
|
type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, RPA1791-1793), involved in active transport of lignin-derived aromatic substrates, and its close homologs; This group includes RPA1789 (CouP) from Rhodopseudomonas palustris and its close homologs in other bacteria. RPA1789 (CouP) is the periplasmic binding-protein component of an ABC system (CouPSTU; RPA1789, RPA1791-1793) that is involved in the active transport of lignin-derived aromatic substrates. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380556 [Multi-domain] Cd Length: 342 Bit Score: 74.51 E-value: 1.27e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGGPgSVAAAQLAIDDCLAA-ECKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAV 106
Cdd:cd06333 1 KIGAILSLTGPAASLGIP-ERNAVELLVEQINAAgGINGRKLELIVYDDESDPTKAVTNARKLIEEDKVDAIIGPSTTGE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 107 ALAVQGIArEKNKVVMFSGPATTALTNKDcspvgFHWMFDT---YSQSAGGAKATVKA-GGKSWYFVTVDYAFGHSLEAD 182
Cdd:cd06333 80 SLAVAPIA-EEAKVPLISLAGAAAIVEPV-----RKWVFKTpqsDSLVAEAILDYMKKkGIKKVALLGDSDAYGQSGRAA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1478765494 183 TVKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGI 243
Cdd:cd06333 154 LKKLAPEYGIEIVADERFARTDTDMTAQLTKIRAAKPDAVLVWASGPPAALVAKNLRQLGY 214
|
|
| PBP1_ABC_ligand_binding-like |
cd19982 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
28-243 |
8.37e-14 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380637 [Multi-domain] Cd Length: 302 Bit Score: 71.54 E-value: 8.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGgPGSVAAAQLAIDDCLAA-ECKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAV 106
Cdd:cd19982 1 KIGAILSLTGPFAPFG-EMFKNGYEMALEEINAAgGIKGKKLELVIEDDQSKPQTALAAAEKLVSQDKVPLIVGGYSSGI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 107 ALAVQGIArEKNKVVMF-SGPATTALTNKdcspvGFHWMFDTYSQSAGGAKATVKA-----GGKSWYFVTVDYAFGHSLE 180
Cdd:cd19982 80 TLPVAAVA-ERQKIPLLvPTAADDDITKP-----GYKYVFRLNPPASIYAKALFDFfkelvKPKTIAILYENTAFGTSVA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1478765494 181 ADTVKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGI 243
Cdd:cd19982 154 KAARRFAKKRGIEVVADESYDKGATDFKPLLNKVKAANPDVVYMVSYLNDAILLMRQAKELGL 216
|
|
| PBP1_AmiC |
cd06357 |
periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding ... |
28-342 |
1.42e-13 |
|
periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding fold protein family; This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Pssm-ID: 380580 [Multi-domain] Cd Length: 357 Bit Score: 71.46 E-value: 1.42e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGgPGSVAAAQLAIDDCLAA-ECKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAV 106
Cdd:cd06357 1 RVGLLFSQTGVTAIIE-QSMLNGALLAIEEINAAgGVNGRPIEPVVYDPASDPDRYRELAERLLLEDGVRHIFGCYTSAS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 107 ALAVQGI---------------AREKNKVVMFSGPAttalTNKDCSPVGfHWMFDTYsqsaggakatvkagGKSWYFVTV 171
Cdd:cd06357 80 RKAVLPVverhnallwyptpyeGFEYSPNVIYTGAV----PNQHLLPLA-RYLLAHF--------------GKRVFLVGS 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 172 DYAFGHSLEADTVKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGIVEGGQRLV 251
Cdd:cd06357 141 NYVYPWESNRVARELIEASGGEVVGERYVPLGDTDFAEIIEEIKSLKPDVVFSTLVGDSIYAFYRAYAEAGLDPADMPIA 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 252 SLLIFLSDLRALGLDSAQGLsYVDGFYWDHDDDT--RAWSARFEKAFRGLKPTMTQA-GVYSSVLHYLRAVAATGSTDGK 328
Cdd:cd06357 221 SLTTSEAEVAAIGAEAAAGH-YTSAPYFQSIDTPenRAFVEAYRARFGDDAVTSAVAeAAYFQVHLLARAIERAGSDDPE 299
|
330
....*....|....
gi 1478765494 329 VVADKMRELPIKDP 342
Cdd:cd06357 300 AIRAALYGQEFDAP 313
|
|
| PBP1_FmdD-like |
cd06355 |
periplasmic component (FmdD) of an active transport system for short-chain amides and urea ... |
28-336 |
2.52e-12 |
|
periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF); This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type 1 periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Pssm-ID: 380578 [Multi-domain] Cd Length: 347 Bit Score: 67.60 E-value: 2.52e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGGPgSVAAAQLAIDDCLAAE-CKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAV 106
Cdd:cd06355 1 KVGILHSLSGTMAISERP-LVDATLLAIDEINAAGgLLGRKIEPVIEDGASDWPTFAEKAEKLITQDKVAVIFGCWTSAS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 107 ALAVQGIAREKNKVVMFsgPA-------------TTALTNKDCSPvGFHWMFDTysqsaggakatvkaGGKSWYFVTVDY 173
Cdd:cd06355 80 RKAVLPVIEKYNGLLFY--PVqyegleqspnivyTGATPNQQILP-AIDWLLEN--------------LGKRFFLVGSDY 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 174 AFGHSLEADTVKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGIVEGGQRLVSL 253
Cdd:cd06355 143 VFPRTANKIIRDQLKALGGEVVGEEYVPLGGTDFDAIVAKIKAFKPDVIVNTLNGDSNIAFFKQLAAAGITASDLPVLSF 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 254 LIFLSDLRALGLDSAQGlSYVD-GFYWDHDD-DTRAWSARFeKAFRGLKPTMTQAGV--YSSVLHYLRAVAATGSTDgkv 329
Cdd:cd06355 223 SVSEAELRAIGPEELAG-HYAAwNYFQSLDTpENQAFVEAF-KAKYGADRVTSDPMEaaYLGVYLWAQAVEKAGSFD--- 297
|
....*..
gi 1478765494 330 vADKMRE 336
Cdd:cd06355 298 -PDAVRA 303
|
|
| PBP1_amide_urea_BP-like |
cd06356 |
periplasmic component (FmdD) of an active transport system for short-chain amides and urea ... |
28-331 |
3.56e-12 |
|
periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF); This group includes the type 1 periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Pssm-ID: 380579 [Multi-domain] Cd Length: 334 Bit Score: 66.94 E-value: 3.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGGPgSVAAAQLAIDDCLAA-ECKGMKIELVSADNQNKADVGAARAREWFDRDGVSAI-ADLTnSA 105
Cdd:cd06356 1 KIGSIFDLSGGLNIYGKP-MVHAMKLAVEEINAAgGLLGRQIELVAYDTQSDMQKYTQYAQQLILRDKVDVVfGGIT-SA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 106 VALAVQGIAReKNKVVMFSGpattaltNKDCSPVGFHWMFDTYS----QSAGGAKATVKAGGKSWYFVTVDYAFGHSLEA 181
Cdd:cd06356 79 SREAIRPILR-RNKILYFYN-------TQYEGGVCDKNTFCTGStpeqQVSPLIEWAIKKYGKKVYIIAADYNFGQISAD 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 182 DTVKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQ-VVALANGGQDTvNAVKQAREFGIVegGQRLVSLLIFLSDL 260
Cdd:cd06356 151 WVKKYAKKNGGEVVGEEFFPLDVTDFGPTIQKIQAAKPDfVVSLLVGGNHI-SFYRQWAAAGLK--KKIPIVSTVFGAGN 227
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1478765494 261 --RALGLDSAQGLsYVDGFYWDHDD--DTRAWSARFEKAFrGLKPTMTQ--AGVYSSVLHYLRAVAATGSTD-GKVVA 331
Cdd:cd06356 228 ehKVLSPPELEGM-YVSYSYFEELDtpANKAFVAKWRAKY-GDEPYINQeaVGVYNAVYLWAEAVEKAGSTErEAVIA 303
|
|
| PBP1_ABC_ligand_binding-like |
cd06326 |
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to ... |
27-271 |
5.71e-11 |
|
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally, however.
Pssm-ID: 380549 [Multi-domain] Cd Length: 339 Bit Score: 63.33 E-value: 5.71e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 27 VKIGVLTDMSGTYAGMGgPGSVAAAQLAIDDCLAAE-CKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSA 105
Cdd:cd06326 1 IVIGQSAPLSGPLAELG-REYLAGAKAYFDQVNAAGgINGRKIRLVTLDDGYDPARTVENTRQLIEQDKVVALFGYVGTA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 106 VALAVQGIAREkNKVVMFsGPATTA-LTNKDCSPVGFHWMfDTYSQSAGGAKATVKA-GGKSWYFVTVDYAFGHSLEADT 183
Cdd:cd06326 80 NVEAVLPLLEE-AGVPLV-GPLTGAdSLREPGNPYVFHVR-ASYADEVEKIVRHLATlGLKRIAVVYQDDPFGKEGLAAA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 184 VKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGiveGGQRLVSL-LIFLSDLRA 262
Cdd:cd06326 157 EAALAARGLEPVATAAVARNAADVAAAAAALAAAKPQAVVLIAAGKAAAAFIKALRAAG---GAAQFYGLsVVGAAALAK 233
|
....*....
gi 1478765494 263 LGLDSAQGL 271
Cdd:cd06326 234 ALGDAARGV 242
|
|
| PBP1_ABC_HAAT-like |
cd19983 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
28-313 |
1.05e-10 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380638 [Multi-domain] Cd Length: 303 Bit Score: 62.22 E-value: 1.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGGPGSvAAAQLAIDDCLAAE-CKGMKIELVSADNQNKADVgAARAREWFDRDGVSAIADLTNSAV 106
Cdd:cd19983 1 RIGFVGGLTGRYSDLGVQGR-NGAQLAVEEINAAGgINGRPVELIIRDDQQDPEA-AKAADRELIAGGVVAIIGHMTSAM 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 107 ALAVQGIArEKNKVVMFSGPATT-ALTNKDcspvgfHWMFDTYS----QSAGGAKATVKAGGKSwyFVTVDY-----AFG 176
Cdd:cd19983 79 TVAVLPVI-NEAKVLMISPTVSTpELSGKD------DYFFRVTPttreSAQALARYAYNRGGLR--RVAVIYdlsnrAYS 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 177 HSLEADTVKAVKALDGTVVGSVrhPLNA---PDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGiveggqrlVSL 253
Cdd:cd19983 150 ESWLDNFRSEFEALGGRIVAEI--PFSSgadVDFSDLARRLLASKPDGLLLVASAVDTAMLAQQIRKLG--------SKI 219
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1478765494 254 LIFLS------DLRALGLDSAQGLSYVDGFywDHDDDTRAWSArFEKAFR---GLKPTMTQAGVYSSVL 313
Cdd:cd19983 220 PLFSSawaateELLELGGKAVEGMLFSQAY--DRNSSNPRYLA-FKEAYEerfGREPSFAAAYAYEAAM 285
|
|
| Peripla_BP_5 |
pfam13433 |
Periplasmic binding protein domain; This domain is found in a variety of bacterial periplasmic ... |
27-336 |
2.79e-09 |
|
Periplasmic binding protein domain; This domain is found in a variety of bacterial periplasmic binding proteins.
Pssm-ID: 463875 [Multi-domain] Cd Length: 363 Bit Score: 58.37 E-value: 2.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 27 VKIGVLTDMSGTYAGMGGPgSVAAAQLAIDDCLAA-ECKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSA 105
Cdd:pfam13433 1 IKVGVLHSLTGTMAISERS-LKDATLMAIEEINAAgGVLGRKIEPVVVDPASDWPLFAEKARKLIDQDKVRVVFGCWTSA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 106 VALAVQGIAREKNKV----VMFSGPA-------TTALTNKDCSPVgFHWMFDTYsqsaggakatvkagGKSWYFVTVDYA 174
Cdd:pfam13433 80 SRKAVLPVFERHNGLlfypVQYEGFEssrnifyTGAAPNQQAIPA-VDYLLSEL--------------GKRFFLVGSDYV 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 175 FGHSLEADTVKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGIVEGGQRLVSLL 254
Cdd:pfam13433 145 YPRTTNRILRAYLKAKGGEVVGERYLPLGSSDWQSIVAKIKAAGPDVVFSTINGDSNVAFYRALRAAGITAEDIPVMSFS 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 255 IFLSDLRALGLDSAQG----LSY---VDGfywdhdDDTRAWSARFEKAFRGLKPT---MTQAgvYSSVLHYLRAVAATGS 324
Cdd:pfam13433 225 VAEEELAGMGPEPLVGhlaaWNYfqsLDT------PENKAFVAAFKARYGDDRVTndpMEAA--YIGVHLWAQAVEKAGT 296
|
330
....*....|..
gi 1478765494 325 TDgkvvADKMRE 336
Cdd:pfam13433 297 DD----PDAVRQ 304
|
|
| PBP1_ABC_HAAT-like |
cd06344 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
48-337 |
7.65e-08 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380567 [Multi-domain] Cd Length: 332 Bit Score: 53.77 E-value: 7.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 48 VAAAQLAIDDCLAAECK-GMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAVALAVQGIArEKNKVVMFSgP 126
Cdd:cd06344 18 LEGVELAVEEINAAGGVlGRKIRLVEYDDEASVDKGLAIAQRFADNPDVVAVIGHRSSYVAIPASIIY-ERAGLLMLS-P 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 127 ATTA--LTNKdcspvGFHWMF------DTYSQSAggAKATVKAGGKSWYFVTVDYAFGHSLEADTVKAVKALDGTVVGSV 198
Cdd:cd06344 96 GATApkLTQH-----GFKYIFrnipsdEDIARQL--ARYAARQGYKRIVIYYDDDSYGKGLANAFEEEARELGITIVDRR 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 199 RHPLNAPDFASYLLQAQS-SKAQVVALANGGQDTVNAVKQAREFGIVeggqrlvsLLIFLSDlralGLDS---------- 267
Cdd:cd06344 169 SYSSDEEDFRRLLSKWKAlDFFDAIFLAGSMPEGAEFIKQARELGIK--------VPIIGGD----GLDSpelieiagka 236
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1478765494 268 AQGLsYVDGFYWDHDDD--TRAWSARFEKAFrGLKPTMTQAGVYSSVLHYLRAVAATGSTDGKVVADKMREL 337
Cdd:cd06344 237 AEGV-VVATVFDPDDPRpeVRAFVEAFRKKY-GREPDVWAAQGYDAVKLLAEAIEKAGSTVPAKIASALRFL 306
|
|
| PBP1_ABC_ligand_binding-like |
cd06341 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
28-323 |
2.05e-07 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380564 [Multi-domain] Cd Length: 340 Bit Score: 52.31 E-value: 2.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTyagmgGPGSVAAAQLAID---DCLAAE--CKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLT 102
Cdd:cd06341 1 KIGLIYPDTGP-----GAASFSAARAGAEarfGLANAAggINGRKVEYVWCDDQSDPATNLQAARQLVEDEKVFALVGSS 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 103 NSAVALAVQGIAREKNKVVMFSGPATTALTNkdcsPVGFHWMFDTYSQSAGGAKATVKAGGKSWYFVTVDYAFGhSLEAD 182
Cdd:cd06341 76 SAASGSANDYLAQAGIPVVGGAGVSVWCFRN----MFSNFFSLGGGGSTTTYGQYAAALGGTKAAVVVTDIPAA-SQQLA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 183 T--VKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGiVEGGQRLVSLLIFLSDL 260
Cdd:cd06341 151 QqlAASLRAAGVEVVGTAPYAAAAPDYTAVAQAAKAAGADAVVGVLDPDVAARVLKAARAQG-LDLKVALSPSGYDPSVL 229
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1478765494 261 RALGlDSAQGLSYVDGFYWDHDD--DTRAWSARFEKAFRGLKPTMTQAGVYS--SVLHYLRAVAATG 323
Cdd:cd06341 230 AAYG-AALAGVSVASTFLPFEADtpAVKAYRAAMAKYAPELQDPLQQFALSGyiAADLFVRGLEAAG 295
|
|
| PBP1_ABC_ligand_binding-like |
cd06334 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
28-243 |
5.86e-07 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380557 [Multi-domain] Cd Length: 360 Bit Score: 51.09 E-value: 5.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGGPGSvAAAQLAIDdcLAAECKGM---KIELVSADNQNKADVGAARAREWFDRDGVSAI-ADLTN 103
Cdd:cd06334 1 KIGLLTDLTGPTADVGKPYA-QGVRDYLN--YVNEEGGIngvKIELEECDTGYKVPRAVACYKRLKAQDGVVAIlGWGTG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 104 SAVALAVQgIAreKNKVVMFSGPATTALTNkdcSPVGFHWMF---DTYSQSAGGA------KATVKAGGKSWYFVTVDYA 174
Cdd:cd06334 78 DTEALAPR-VA--KDKIPYISASYGRSLAD---DGKVFPYNFfvgATYSSQARALlkyiaqEWGGKLKGPKVAFVYHDSP 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1478765494 175 FGHSLEADTVKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQAREFGI 243
Cdd:cd06334 152 FGREPIPALKAYAKELGFEVVAEQVPSPGALDATAQWLRIRRAGPDYVIIQGTGGSVAVIIKDAKRLGL 220
|
|
| PBP1_ABC_ligand_binding-like |
cd19979 |
amino acid amide ABC transporter substrate binding protein haat family; This subgroup includes ... |
28-234 |
9.38e-07 |
|
amino acid amide ABC transporter substrate binding protein haat family; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380634 [Multi-domain] Cd Length: 350 Bit Score: 50.30 E-value: 9.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAgMGGPGSVAAAQLAIDDCLAAEC-KGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTNSAV 106
Cdd:cd19979 1 VIGLDADLSGGSA-ASGEAIKRGIQLAIDEINAAGGlLGRKLELVAKDHRGNPARGVDNLREFAADPDVLAVFGGLHSPV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 107 ALAVQGIAREkNKVVMFsGP--ATTALTNKDCSPvgfHWMF-----DTYsqsAGGA--KATVKAGGKSWYFVTVDYAFGH 177
Cdd:cd19979 80 LLAELDFIHE-LKIPYL-VPwaAATPITRNGYSP---NYIFrlsvdDSL---AGPFlvEYALKKGCKRPALLLENTGWGR 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 178 SLEADTVKAVKALDGTVVGSVRHPLNAPDFASYLLQAQSSKAQV---VALANGGQDTVNA 234
Cdd:cd19979 152 SNLKAMTKALAKKGLQPVGVEWFNWGDTDAKPQLRALKAAGADAillVANAPEGAAIVKA 211
|
|
| ANF_receptor |
pfam01094 |
Receptor family ligand binding region; This family includes extracellular ligand binding ... |
50-331 |
6.46e-06 |
|
Receptor family ligand binding region; This family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure.
Pssm-ID: 460062 [Multi-domain] Cd Length: 347 Bit Score: 47.77 E-value: 6.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 50 AAQLAIDDcLAAE---CKGMKIELVSADNQNKADVGAARAREwFDRDGVSAIADLTNSAVALAVQGIAREkNKVVMFSGP 126
Cdd:pfam01094 5 AVRLAVED-INADpglLPGTKLEYIILDTCCDPSLALAAALD-LLKGEVVAIIGPSCSSVASAVASLANE-WKVPLISYG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 127 ATT-ALTNKDCSPVGFHWMFDTYSQSAGGAKATVKAGGKSWYFVTVDYAFGHSLEADTVKAVKALDGTVVGSVRHPLNAP 205
Cdd:pfam01094 82 STSpALSDLNRYPTFLRTTPSDTSQADAIVDILKHFGWKRVALIYSDDDYGESGLQALEDALRERGIRVAYKAVIPPAQD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 206 DFASY--LLQAQSSKAQVVALANGGQDTVNAVKQAREFGIVEGGQRLV---SLLIFLSDLRALGLDSAQGLSYV------ 274
Cdd:pfam01094 162 DDEIArkLLKEVKSRARVIVVCCSSETARRLLKAARELGMMGEGYVWIatdGLTTSLVILNPSTLEAAGGVLGFrlhppd 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1478765494 275 ----DGFYWDHDDDTRAWsarfeKAFRGLKPTMTQAGVYSSVLHYLRAVAATGSTDGKVVA 331
Cdd:pfam01094 242 spefSEFFWEKLSDEKEL-----YENLGGLPVSYGALAYDAVYLLAHALHNLLRDDKPGRA 297
|
|
| PBP1_ABC_HAAT-like |
cd19985 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
28-277 |
8.60e-03 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380640 [Multi-domain] Cd Length: 321 Bit Score: 38.03 E-value: 8.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 28 KIGVLTDMSGTYAGMGGPgSVAAAQLAIDDCLAA-ECKGMKIELVSADNQNKADVGAARAREWFDRDGVSAIADLTnSAV 106
Cdd:cd19985 1 HIAVVGPMSGKSASKGKS-MLRGAELYIDQINAAgGINGKKVKLDVFDDQNDPDAARKAAQIIVSDKALAVIGHYY-SSA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 107 ALAVQGIaREKNKVVMFSGPATTALTNKDcSPVGFHWMFDTYSQSAGGAKATVKAGGKSwyFVTVDY---AFGHSLEADT 183
Cdd:cd19985 79 SIAAGKI-YKKAGIPAITPSATADAVTRD-NPWYFRVIFNDSLQGRFLANYAKKVLKKD--KVSIIYeedSYGKSLASVF 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478765494 184 VKAVKALDGTVVGSVRHPLNAPDFASYL------LQAQSSKAQVVALANGGQDTVNAVKQAREFGIveggqrlvsllifl 257
Cdd:cd19985 155 EATARALGLKVLKKWSFDTDSSQLDQNLdqivdeLKKAPDEPGVIFLATHADEGAKLIKKLRDAGL-------------- 220
|
250 260
....*....|....*....|
gi 1478765494 258 sDLRALGLDSAQGLSYVDGF 277
Cdd:cd19985 221 -KAPIIGPDSLASESFAQGF 239
|
|
| |
