|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15404 |
PRK15404 |
high-affinity branched-chain amino acid ABC transporter substrate-binding protein; |
19-360 |
4.80e-178 |
|
high-affinity branched-chain amino acid ABC transporter substrate-binding protein;
Pssm-ID: 237959 [Multi-domain] Cd Length: 369 Bit Score: 498.78 E-value: 4.80e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 19 DTITIALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIVNDGVKFVIGHLCSS 98
Cdd:PRK15404 24 DDIKIAIVGPMSGPVAQYGDMEFTGARQAIEDINAKGGIKGDKLEGVEYDDACDPKQAVAVANKVVNDGIKYVIGHLCSS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 99 STMPAAEIYDENGIVMITAASTSPELSQKGYSTILRTIGTDLQSAPVSAAYIADVIKPKHIALLHDKQAYGQGLVDAVAA 178
Cdd:PRK15404 104 STQPASDIYEDEGILMITPAATAPELTARGYQLIFRTIGLDSDQGPTAAKYILEKVKPKRIAVLHDKQQYGEGLARSVKD 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 179 DLKARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKPVFMGADGVDNADLFAIAGSA 258
Cdd:PRK15404 184 GLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDFVYYGGYHPEMGQILRQAREAGLKTQFMGPEGVGNKSLSNIAGPA 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 259 AEGVLATVPMDFSAAPENAAIVEAIKAKKQDPNGPFVMPSYAAVQVLGEAAKRAGSDDPETIAKTLREGEYDTAIGKISF 338
Cdd:PRK15404 264 SEGMLVTLPKRYDQDPANKAIVDAFKAKKQDPSGPFVWTTYAAVQSLAAGINRAGSDDPAKVAKYLKANTFDTVIGPLSW 343
|
330 340
....*....|....*....|..
gi 1489639363 339 EKNGDLKDFHSVVYELHADGKK 360
Cdd:PRK15404 344 DEKGDLKGFEFGVFEWHADGTK 365
|
|
| PBP1_ABC_LIVBP-like |
cd06342 |
type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active ... |
22-353 |
2.88e-127 |
|
type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); This subgroup includes the type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Pssm-ID: 380565 [Multi-domain] Cd Length: 334 Bit Score: 368.39 E-value: 2.88e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 22 TIALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIVNDGVKFVIGHLCSSSTM 101
Cdd:cd06342 1 KIGVAGPLTGPNAALGQDIRNGAELAVDEINAKGGGLGFKIELVAQDDACDPAQAVAAAQKLVADGVVAVIGHYNSGAAI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 102 PAAEIYDENGIVMITAASTSPELSQKGYSTILRTIGTDLQSAPVSAAYIADVIKPKHIALLHDKQAYGQGLVDAVAADLK 181
Cdd:cd06342 81 AAAPIYAEAGIPMISPSATNPKLTEQGYKNFFRVVGTDDQQGPAAADYAAKTLKAKRVAVIHDGTAYGKGLADAFKKALK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 182 ARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKPVFMGADGVDNADLFAIAGSAAEG 261
Cdd:cd06342 161 ALGGTVVGREGITPGTTDFSALLTKIKAANPDAVYFGGYYPEAGLLLRQLREAGLKAPFMGGDGIVSPDFIKAAGDAAEG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 262 VLATVPM-DFSAAPENAAIVEAIKAKKQDPNGPFVMPSYAAVQVLGEAAKRAGSDDPETIAKTLREGEYDTAIGKISFEK 340
Cdd:cd06342 241 VYATTPGaPPEKLPAAKAFLKAYKAKFGEPPGAYAAYAYDAAQVLLAAIEKAGSTDRAAVAAALRATDFDGVTGTISFDA 320
|
330
....*....|...
gi 1489639363 341 NGDLKDFHSVVYE 353
Cdd:cd06342 321 KGDLTGPAFTVYQ 333
|
|
| LivK |
COG0683 |
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid ... |
18-362 |
2.63e-84 |
|
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid transport and metabolism];
Pssm-ID: 440447 [Multi-domain] Cd Length: 314 Bit Score: 258.32 E-value: 2.63e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 18 EDTITIALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIVN-DGVKFVIGHLC 96
Cdd:COG0683 1 ADPIKIGVLLPLTGPYAALGQPIKNGAELAVEEINAAGGVLGRKIELVVEDDASDPDTAVAAARKLIDqDKVDAIVGPLS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 97 SSSTMPAAEIYDENGIVMITAASTSPELS-QKGYSTILRTIGTDLQSAPVSAAYIADVIKPKHIALLHDKQAYGQGLVDA 175
Cdd:COG0683 81 SGVALAVAPVAEEAGVPLISPSATAPALTgPECSPYVFRTAPSDAQQAEALADYLAKKLGAKKVALLYDDYAYGQGLAAA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 176 VAADLKARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKPVFmgadgvdnadlfaia 255
Cdd:COG0683 161 FKAALKAAGGEVVGEEYYPPGTTDFSAQLTKIKAAGPDAVFLAGYGGDAALFIKQAREAGLKGPL--------------- 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 256 gsaaegvlatvpmdfsaapeNAAIVEAIKAKKQDPNGPFVMPSYAAVQVLGEAAKRAGSDDPETIAKTLREGEYDTAIGK 335
Cdd:COG0683 226 --------------------NKAFVKAYKAKYGREPSSYAAAGYDAALLLAEAIEKAGSTDREAVRDALEGLKFDGVTGP 285
|
330 340
....*....|....*....|....*..
gi 1489639363 336 ISFEKNGDLKDFhSVVYELHADGKKVL 362
Cdd:COG0683 286 ITFDPDGQGVQP-VYIVQVKADGKFVV 311
|
|
| PBP1_ABC_HAAT-like |
cd06349 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
22-343 |
3.53e-76 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380572 [Multi-domain] Cd Length: 338 Bit Score: 238.24 E-value: 3.53e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 22 TIALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIV-NDGVKFVIGHLCSSST 100
Cdd:cd06349 1 KIGVSGPLTGDNAEYGQQFKNGVELAVDEINAAGGVNGRKLELVVYDDQGDPKEAVNIAQKFVsDDKVVAVIGDFSSSCS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 101 MPAAEIYDENGIVMITAASTSPELSqKGYSTILRTIGTDLQSAPVSAAYIADVIKPKHIALLHDKQAYGQGLVDAVAADL 180
Cdd:cd06349 81 MAAAPIYEEAGLVQISPTASHPDFT-KGGDYVFRNSPTQAVEAPFLADYAVKKLGAKKIAIIYLNTDWGVSAADAFKKAA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 181 KARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKPVFMGADGVDNADLFAIAGSAAE 260
Cdd:cd06349 160 KALGGEIVATEAYLPGTKDFSAQITKIKNANPDAIYLAAYYNDAALIAKQARQLGWDVQIFGSSSLYSPEFIELAGDAAE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 261 GV-LATVPMDFSAAPENAAIVEAIKAKKQDPNGPFVMPSYAAVQVLGEAAKRAGSdDPETIAKTLREGEYDTAI-GKISF 338
Cdd:cd06349 240 GVyLSSPFFPESPDPEVKEFVKAYKAKYGEDPDDFAARAYDAVNILAEAIEKAGT-DREAIRDALANIKDFSGLtGTITF 318
|
....*
gi 1489639363 339 EKNGD 343
Cdd:cd06349 319 DENGD 323
|
|
| PBP1_ABC_ligand_binding-like |
cd19980 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
23-343 |
7.08e-74 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380635 [Multi-domain] Cd Length: 334 Bit Score: 232.11 E-value: 7.08e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 23 IALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIVN-DGVKFVIGHLCSSSTM 101
Cdd:cd19980 2 IGVIAPLSGPVAALGQQVLNGAKLAVEEINAKGGVLGRKLELVVEDDKCPPAEGVAAAKKLITdDKVPAIIGAWCSSVTL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 102 PAAEIYDENGIVMITAASTSPELSQKGYSTILRTIGTDLQSAPVSAAYIADVIKPKHIALLHDKQAYGQGLVDAVAADLK 181
Cdd:cd19980 82 AVMPVAERAKVPLVVEISSAPKITEGGNPYVFRLNPTNSMLAKAFAKYLADKGKPKKVAFLAENDDYGRGAAEAFKKALK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 182 ARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKPVFMGADGVDNADLFAIAGSAAEG 261
Cdd:cd19980 162 AKGVKVVATEYFDQGQTDFTTQLTKLKAANPDAIFVVAETEDGALILKQARELGLKQQLVGTGGTTSPDLIKLAGDAAEG 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 262 VLATVPMDFSAA-PENAAIVEAIKAKKQDPNGPFVMPSYAAVQVLGEAAKRAGSDDPETIAKTLREG-EYDTAIGKISFE 339
Cdd:cd19980 242 VYGASIYAPTADnPANKAFVAAYKKKYGEPPDKFAALGYDAVMVIAEAIKKAGSTDPEKIRAAALKKvDYKGPGGTIKFD 321
|
....
gi 1489639363 340 KNGD 343
Cdd:cd19980 322 EKGQ 325
|
|
| PBP1_ABC_transporter_LIVBP-like |
cd06268 |
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the ... |
22-306 |
2.47e-71 |
|
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily; Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.
Pssm-ID: 380492 [Multi-domain] Cd Length: 298 Bit Score: 224.51 E-value: 2.47e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 22 TIALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIV-NDGVKFVIGHLCSSST 100
Cdd:cd06268 1 KIGVVVPLTGPYADYGEEILRGVALAVEEINAAGGINGRKLELVIADDQGDPETAVAVARKLVdDDKVLAVVGHYSSSVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 101 MPAAEIYDENGIVMITAASTSPELSQKGYSTILRTIGTDLQSAPVSAAYIADVIKPKHIALLHDKQAYGQGLVDAVAADL 180
Cdd:cd06268 81 LAAAPIYQEAGIPLISPGSTAPELTEGGGPYVFRTVPSDAMQAAALADYLAKKLKGKKVAILYDDYDYGKSLADAFKKAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 181 KARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKPVFMGADGVDNADLFAIAGSAAE 260
Cdd:cd06268 161 KALGGEIVAEEDFPLGTTDFSAQLTKIKAAGPDVLFLAGYGADAANALKQARELGLKLPILGGDGLYSPELLKLGGEAAE 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1489639363 261 GVLATVPMDFSAAPE-NAAIVEAIKAKKQDPNGPFVMPSYAAVQVLG 306
Cdd:cd06268 241 GVVVAVPWHPDSPDPpKQAFVKAYKKKYGGPPSWRAATAYDATQALA 287
|
|
| PBP1_ABC_LivK_ligand_binding-like |
cd06347 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
23-343 |
5.78e-71 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380570 [Multi-domain] Cd Length: 334 Bit Score: 224.73 E-value: 5.78e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 23 IALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIVN-DGVKFVIGHLCSSSTM 101
Cdd:cd06347 2 IGVIGPLTGEAAAYGQPALNGAELAVDEINAAGGILGKKIELIVYDNKSDPTEAANAAQKLIDeDKVVAIIGPVTSSIAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 102 PAAEIYDENGIVMITAASTSPELSQKGYStILRTIGTDLQSAPVSAAYIADVIKPKHIALLHDK-QAYGQGLVDAVAADL 180
Cdd:cd06347 82 AAAPIAQKAKIPMITPSATNPLVTKGGDY-IFRACFTDPFQGAALAKFAYEELGAKKAAVLYDVsSDYSKGLAKAFKEAF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 181 KARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKPVFMGADGVDNADLFAIAGSAAE 260
Cdd:cd06347 161 EKLGGEIVAEETYTSGDTDFSAQLTKIKAANPDVIFLPGYYEEAALIIKQARELGITAPILGGDGWDSPELLELGGDAVE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 261 GVLATVPMDFSAA-PENAAIVEAIKAKKQDPNGPFVMPSYAAVQVLGEAAKRAGSDDPETIAKTLREG-EYDTAIGKISF 338
Cdd:cd06347 241 GVYFTTHFSPDDPsPEVQEFVKAYKAKYGEPPNAFAALGYDAVMLLADAIKRAGSTDPEAIRDALAKTkDFEGVTGTITF 320
|
....*
gi 1489639363 339 EKNGD 343
Cdd:cd06347 321 DPNGN 325
|
|
| PBP1_ABC_HAAT-like |
cd06344 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
21-346 |
3.18e-65 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380567 [Multi-domain] Cd Length: 332 Bit Score: 209.77 E-value: 3.18e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 21 ITIALAGPETGPVTQYgtiqKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIV-NDGVKFVIGHLCSSS 99
Cdd:cd06344 2 IVIGVAWPFAPDGDLF----LEGVELAVEEINAAGGVLGRKIRLVEYDDEASVDKGLAIAQRFAdNPDVVAVIGHRSSYV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 100 TMPAAEIYDENGIVMITAASTSPELSQKGYSTILRTIGTDLQSAPVSAAYIADViKPKHIALLHDKQAYGQGLVDAVAAD 179
Cdd:cd06344 78 AIPASIIYERAGLLMLSPGATAPKLTQHGFKYIFRNIPSDEDIARQLARYAARQ-GYKRIVIYYDDDSYGKGLANAFEEE 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 180 LKARGIEPVIVEGVNKGQSDFSALITKLK-NANVDFVYWGGFHPEAGAILRQGADQGFKPVFMGADGVDNADLFAIAGSA 258
Cdd:cd06344 157 ARELGITIVDRRSYSSDEEDFRRLLSKWKaLDFFDAIFLAGSMPEGAEFIKQARELGIKVPIIGGDGLDSPELIEIAGKA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 259 AEGVlaTVPMDFS---AAPENAAIVEAIKAK-KQDPNGPFVMpSYAAVQVLGEAAKRAGSDDPETIAKTLREGEY-DTAI 333
Cdd:cd06344 237 AEGV--VVATVFDpddPRPEVRAFVEAFRKKyGREPDVWAAQ-GYDAVKLLAEAIEKAGSTVPAKIASALRFLENwEGVT 313
|
330
....*....|...
gi 1489639363 334 GKISFEKNGDLKD 346
Cdd:cd06344 314 GTYSFDANGDVVG 326
|
|
| PBP1_ABC_ligand_binding-like |
cd19984 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
22-311 |
5.94e-64 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380639 [Multi-domain] Cd Length: 296 Bit Score: 205.53 E-value: 5.94e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 22 TIALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQ-IVNDGVKFVIGHLCSSST 100
Cdd:cd19984 1 KIGVILPLTGDAASYGEDMKNGIELAVEEINAAGGINGKKIELIYEDSKCDPKKAVSAANKlINVDKVKAIIGGVCSSET 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 101 MPAAEIYDENGIVMITAASTSPELSQKG-YstILRTIGTDLQSAPVSAAYIADVIKpKHIALLHDKQAYGQGLVDAVAAD 179
Cdd:cd19984 81 LAIAPIAEQNKVVLISPGASSPEITKAGdY--IFRNYPSDAYQGKVLAEFAYNKLY-KKVAILYENNDYGVGLKDVFKKE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 180 LKARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKPVFMGADGVDNADLFAIAGSAA 259
Cdd:cd19984 158 FEELGGKIVASESFEQGETDFRTQLTKIKAANPDAIFLPGYPKEGGLILKQAKELGIKAPILGSDGFEDPELLEIAGEAA 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1489639363 260 EGVLATVP-MDFSAAPENAAIVEAIKAKKQDPNGPFVMPSYAAVQVL-GEAAKR 311
Cdd:cd19984 238 EGVIFTYPaFDDSSEKKQKFFFYRYKEKYGKEPDIYAALAYDAVMILaGDVVKP 291
|
|
| PBP1_ABC_ligand_binding-like |
cd06335 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
23-324 |
5.69e-61 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380558 [Multi-domain] Cd Length: 348 Bit Score: 199.37 E-value: 5.69e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 23 IALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIV-NDGVKFVIGHLCSSSTM 101
Cdd:cd06335 2 IGVIGPLTGPSAELGESARRGVELAVEEINAAGGILGRKIELVERDDEANPTKAVQNAQELIdKEKVVAIIGPTNSGVAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 102 PAAEIYDENGIVMITAASTSPEL---SQKGYSTILRTIGTDLQSAPVSAAYIADvIKPKHIALLHDKQAYGQGLVDAVAA 178
Cdd:cd06335 82 ATIPILQEAKIPLIIPVATGTAItkpPAKPRNYIFRVAASDTLQADFLVDYAVK-KGFKKIAILHDTTGYGQGGLKDVEA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 179 DLKARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKPVFMGADGVDNADLFAIAGSA 258
Cdd:cd06335 161 ALKKRGITPVATESFKIGDTDMTPQLLKAKDAGADVILVYGLGPDLAQILKAMEKLGWKVPLVGSWGLSMPNFIELAGPL 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 259 AEGVLATVPMDFSAA-PENAAIVEAIKAK---KQDPNGPFVMPSYAAVQVLGEAAKRAGSDDPETIAKTL 324
Cdd:cd06335 241 AEGTIMTQTFIEDYLtPRAKKFIDAYKKKygtDRIPSPVSAAQGYDAVYLLAAAIKQAGSTDGKKIRAAL 310
|
|
| PBP1_ABC_ligand_binding-like |
cd06338 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
28-343 |
6.81e-60 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380561 [Multi-domain] Cd Length: 347 Bit Score: 196.65 E-value: 6.81e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 28 PETGPVTQYGTIQKIGAEAAIDFLNANGGF--NGKKLVVK--SYDDACEPKQAVTVANQ-IVNDGVKFVIGHLCSSSTMP 102
Cdd:cd06338 7 SLTGPFAGEGKAQKRGYELWVEDVNAAGGVkgGGKKRPVElvYYDDQSDPATAVRLYEKlITEDKVDLLLGPYSSGLTLA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 103 AAEIYDENGIVMITAASTSPELSQKGYSTILRTIGT-DLQSAPVSAAYIADVIKPKHIALLHDKQAYGQGLVDAVAADLK 181
Cdd:cd06338 87 AAPVAEKYGIPMIAGGAASDSIFERGYKYVFGVLPPaSDYAKGLLDLLAELGPKPKTVAIVYEDDPFGKEVAEGAREAAK 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 182 ARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKP-VFMGADGVDNADLFAIAGSAAE 260
Cdd:cd06338 167 KAGLEVVYDESYPPGTTDFSPLLTKVKAANPDILLVGGYPPDAITLVRQMKELGYNPkAFFLTVGPAFPAFREALGKDAE 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 261 GVLATVP----MDFSAAPENAAIVEAIKAKKQDPNGPFVMPSYAAVQVLGEAAKRAGSDDPETIAKTLREGEYDTAIGKI 336
Cdd:cd06338 247 GVLGPSQwepsLPYKVFPGAKEFVKAYKEKFGEEPSYHAAAAYAAGQVLQQAIEKAGSLDPEKVRDALASLDFDTVYGPI 326
|
....*..
gi 1489639363 337 SFEKNGD 343
Cdd:cd06338 327 KFDETGL 333
|
|
| PBP1_ABC_HAAT-like |
cd19988 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
23-305 |
2.14e-57 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380643 [Multi-domain] Cd Length: 302 Bit Score: 188.64 E-value: 2.14e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 23 IALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIVN-DGVKFVIGHLCSSSTM 101
Cdd:cd19988 2 IGVFGPLSGDAAPYGQAMLQGAELAVEEINAAGGILGIPIELVVEDDEGLPAASVSAAKKLIYqDKVWAIIGSINSSCTL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 102 PAAEIYDENGIVMITAASTSPELSQKGYSTILRTIGTDLQSAPVSAAYIADVIKPKHIALLHDKQAYGQGLVDAVAADLK 181
Cdd:cd19988 82 AAIRVALKAGVPQINPGSSAPTITESGNPWVFRCTPDDRQQAYALVDYAFEKLKVTKIAVLYVNDDYGRGGIDAFKDAAK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 182 ARGIEPVIVEGVNKGQSDFSALITKLKNANVD-FVYWGgFHPEAGAILRQGADQGFKPVFMGADGVDNADLFAIAGSAAE 260
Cdd:cd19988 162 KYGIEVVVEESYNRGDKDFSPQLEKIKDSGAQaIVMWG-QYTEGALIAKQARELGLKQPLFGSDGLVTPKFIELAGDAAE 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1489639363 261 GVLATVPM-DFSAAPENAAIVEAIKAKKQDPNGPFVMPSYAAVQVL 305
Cdd:cd19988 241 GAIATTPFlPDSDDPKVSAFVEKYKKRYGEEPDVFAAQAYDAMNIL 286
|
|
| Peripla_BP_6 |
pfam13458 |
Periplasmic binding protein; This family includes a diverse range of periplasmic binding ... |
20-338 |
1.95e-55 |
|
Periplasmic binding protein; This family includes a diverse range of periplasmic binding proteins.
Pssm-ID: 433225 [Multi-domain] Cd Length: 342 Bit Score: 184.78 E-value: 1.95e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 20 TITIALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIV-NDGVKFVIGHLCSS 98
Cdd:pfam13458 1 PIKIGVLTPLSGPYASSGKSSRAGARAAIEEINAAGGVNGRKIELVVADDQGDPDVAAAAARRLVdQDGVDAIVGGVSSA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 99 STMPAAEIYDENGIVMITAASTSPElsqKGYSTILRTIGTDLQSAPVSAAYIADVIKPKHIALLHDKQAYGQGLVDAVAA 178
Cdd:pfam13458 81 VALAVAEVLAKKGVPVIGPAALTGE---KCSPYVFSLGPTYSAQATALGRYLAKELGGKKVALIGADYAFGRALAAAAKA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 179 DLKARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKP--VFMGADGVDNADLFAIAG 256
Cdd:pfam13458 158 AAKAAGGEVVGEVRYPLGTTDFSSQVLQIKASGADAVLLANAGADTVNLLKQAREAGLDAkgIKLVGLGGDEPDLKALGG 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 257 SAAEGVLATVP-MDFSAAPENAAIVEAIKAK-KQDPNGPFVMPSYAAVQVLGEAAKRAGSDDPETIAKTLREGEYDTAIG 334
Cdd:pfam13458 238 DAAEGVYATVPfFPDLDNPATRAFVAAFAAKyGEAPPTQFAAGGYIAADLLLAALEAAGSPTREAVIAALRALPYDGPFG 317
|
....
gi 1489639363 335 KISF 338
Cdd:pfam13458 318 PVGF 321
|
|
| PBP1_ABC_ligand_binding-like |
cd06343 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
19-338 |
3.20e-55 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Pssm-ID: 380566 [Multi-domain] Cd Length: 355 Bit Score: 184.69 E-value: 3.20e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 19 DTITIALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIVN-DGVKFVIGHLCS 97
Cdd:cd06343 5 DEIKIGTSLPLSGPAAAYGKPVRAGAAAYFDEVNAAGGINGRKIELIVEDDGYDPARAVAAVRKLVEqDKVFAIVGGLGT 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 98 SSTMPAAEIYDENGIVMITAASTSPELSQKGYSTILRTIGTDLQSAPVSAAYIADVIKPKHIALLHDKQAYGQGLVDAVA 177
Cdd:cd06343 85 PTNLAVRPYLNEAGVPQLFPATGASALSPPPKPYTFGVQPSYEDEGRILADYIVETLPAAKVAVLYQNDDFGKDGLEGLK 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 178 ADLKARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKPVFMGADGVDNAD-LFAIAG 256
Cdd:cd06343 165 EALKAYGLEVVAEETYEPGDTDFSSQVLKLKAAGADVVVLGTLPKEAAAALKEAAKLGWKPTFLGSSVSADPTtLAKAGG 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 257 SAAEGVLATVPMDFSAAPENAAIVEAIKAKKQ----DPNGPFVMPSYAAVQVLGEAAKRAGSD-DPETIAKTLR--EGEY 329
Cdd:cd06343 245 DAAEGVYSASYLKDPTDADDPAVKEFREAYKKyfpdDPPNAYALYGYAAAQVFVEALKRAGKDlTREGLIKALEslKDFD 324
|
330
....*....|
gi 1489639363 330 DTAIG-KISF 338
Cdd:cd06343 325 DGGPGpPVTF 334
|
|
| PBP1_ABC_ligand_binding-like |
cd06340 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
23-352 |
1.86e-54 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380563 [Multi-domain] Cd Length: 352 Bit Score: 182.76 E-value: 1.86e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 23 IALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGF---NGKKLVVKSYDDACEPKQAVTVANQIVN-DGVKFVIGHLCSS 98
Cdd:cd06340 2 IGVLYPLSGPLALIGQEAKRGAELAVDEINAAGGIkslGGAKIELVVADTQSDPEVAASEAERLITqEGVVAIIGAYSSS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 99 STMPAAEIYDENGIVMITAASTSPELSQKGYSTILRTIGTDLQSAPVSAAYIADVIKPKH-----IALLHDKQAYGQGLV 173
Cdd:cd06340 82 VTLAASQVAERYGVPFVTASAVADEITERGFKYVFRTAPTASQFAEDAVDFLKELAKKKGkkikkVAIIYEDSAFGTSVA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 174 DAVAADLKARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKP-VFMGAD-GVDNADL 251
Cdd:cd06340 162 KGLKKAAKKAGLEVVLDEPYPAGATDLSSEVLKLKAAKPDVVFATSYTNDAILLLRTMKELGFKPkAIIGVGgGYSDPEF 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 252 FAIAGSAAEGVLATV---PMDFSAAPENAAIVEAIKAK-KQDPNGpFVMPSYAAVQVLGEAAKRAGSDDPETI----AKT 323
Cdd:cd06340 242 LKALGKDAEGVFSVVpwsPDLAKKKPGAKEVNERYKKKyGEDMTG-HAARAYTAAWVLADALERAGSTDPEAIraaaALT 320
|
330 340 350
....*....|....*....|....*....|
gi 1489639363 324 LREGEYDTAIG-KISFEKNGDLKDFHSVVY 352
Cdd:cd06340 321 LDIPEGLIMPGgGVKFDEKGQNVLARPVVV 350
|
|
| PBP1_ABC_HAAT-like |
cd06348 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
23-343 |
3.18e-53 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380571 [Multi-domain] Cd Length: 342 Bit Score: 178.97 E-value: 3.18e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 23 IALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQ-IVNDGVKFVIGHLCSSSTM 101
Cdd:cd06348 2 IGVALSLTGPGALYGQSQKNGAQLAVEEINAAGGVGGVKIELIVEDTAGDPEQAINAFQKlINQDKVLAILGPTLSSEAF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 102 PAAEIYDENGIVMITAASTSPELSQKGySTILRTIGTDLQSAPVSAAYIADVIKPKHIALLHD-KQAYGQGLVDAVAADL 180
Cdd:cd06348 82 AADPIAQQAKVPVVGISNTAPGITDIG-PYIFRNSLPEDKVIPPTVKAAKKKYGIKKVAVLYDqDDAFTVSGTKVFPAAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 181 KARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKPVFMGADGVDNADLFAIAGSAAE 260
Cdd:cd06348 161 KKNGVEVLDTETFQTGDTDFSAQLTKIKALNPDAIVISALAQEGALIVKQARELGLKGPIVGGNGFNSPDLIKLAGKAAE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 261 GVLATVPmdFSAA---PENAAIVEAIKAKKQDPNGPFVMPSYAAVQVLGEAAKRAGS-DDPETI----AKTLREGEYDTA 332
Cdd:cd06348 241 GVIVGSA--WSPDnpdPKNQAFVAAYKEKYGKEPDQFAAQAYDAAYILAEAIKKAGStTDRADLrdalARILIAKDFEGP 318
|
330
....*....|.
gi 1489639363 333 IGKISFEKNGD 343
Cdd:cd06348 319 LGPFSFDADRD 329
|
|
| PBP1_ABC_ligand_binding-like |
cd06346 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
22-343 |
3.85e-53 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380569 [Multi-domain] Cd Length: 314 Bit Score: 178.14 E-value: 3.85e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 22 TIALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIVN-DGVKFVIGHLCSSST 100
Cdd:cd06346 1 KIGALLPLTGPLASLGPPMLAAAELAVEEINAAGGVLGKKVELVVEDSQTDPTAAVDAARKLVDvEGVPAIVGAASSGVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 101 MPAAEIYDENGIVMITAASTSPELSQ---KGYstILRTIGTDLQSAPVSAAYIAD--VikpKHIALLHDKQAYGQGLVDA 175
Cdd:cd06346 81 LAVASVAVPNGVVQISPSSTSPALTTledKGY--VFRTAPSDALQGVVLAQLAAErgF---KKVAVIYVNNDYGQGLADA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 176 VAADLKARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKPV-FMGADGVDNADLF-A 253
Cdd:cd06346 156 FKKAFEALGGTVTASVPYEPGQTSYRAELAQAAAGGPDALVLIGYPEDGATILREALELGLDFTpWIGTDGLKSDDLVeA 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 254 IAGSAAEGVLATVPmDFSAAPENAAIVEAIKAKKQDPNGPFVMPSYAAVQVLGEAakragsddpetiaktlregeYDTAI 333
Cdd:cd06346 236 AGAEALEGMLGTAP-GSPGSPAYEAFAAAYKAEYGDDPGPFAANAYDAVMLLALA--------------------YEGAS 294
|
330
....*....|
gi 1489639363 334 GKISFEKNGD 343
Cdd:cd06346 295 GPIDFDENGD 304
|
|
| PBP1_ABC_transporter_GPCR_C-like |
cd04509 |
Family C of G-protein coupled receptors and their close homologs, the type 1 ... |
28-267 |
4.59e-52 |
|
Family C of G-protein coupled receptors and their close homologs, the type 1 periplasmic-binding proteins of ATP-binding cassette transporter-like systems; This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type 1 periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, pheromone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts through either mGluRs or iGluRs. mGluRs subunits possess seven transmembrane segments and a large N-terminal extracellular domain. ABC-type leucine-isoleucine-valine binding protein (LIVBP) is a bacterial periplasmic binding protein that has homology with the amino-terminal domain of the glutamate-receptor ion channels (iGluRs). The extracellular regions of iGluRs are made of two PBP-like domains in tandem, a LIVBP-like domain that constitutes the N terminus (included in this model) followed by a domain related to lysine-arginine-ornithine-binding protein (LAOBP) that belongs to the type 2 periplasmic binding fold protein superfamily. The uncharacterized periplasmic components of various ABC-type transport systems are also included in this family.
Pssm-ID: 380490 Cd Length: 306 Bit Score: 175.19 E-value: 4.59e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 28 PETGPVTQYGTIQKIGAEAAIDFLNANG-GFNGKKLVVKSYDDACEPKQAVTVANQIVND-------------------- 86
Cdd:cd04509 17 PCGDIVAQYGIQRFEAMEQALDDINADPnLLPNNTLGIVIYDDCCDPKQALEQSNKFVNDliqkdtsdvrctngeppvfv 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 87 ---GVKFVIGHLCSSSTMPAAEIYDENGIVMITAASTSPELSQK-GYSTILRTIGTDLQSAPVSAAYIADVIkPKHIALL 162
Cdd:cd04509 97 kpeGIKGVIGHLCSSVTIPVSNILELFGIPQITYAATAPELSDDrGYQLFLRVVPLDSDQAPAMADIVKEKV-WQYVSIV 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 163 HDKQAYGQGLVDAVAADLKARGIEPVIVEGV--NKGQSDFSALITKLKNAN-VDFVYWGGFHPEAGAILRQG--ADQGFK 237
Cdd:cd04509 176 HDEGQYGEGGARAFQDGLKKGGLCIAFSDGItaGEKTKDFDRLVARLKKENnIRFVVYFGYHPEMGQILRAArrAGLVGK 255
|
250 260 270
....*....|....*....|....*....|.
gi 1489639363 238 PVFMGADGVDNADL-FAIAGSAAEGVLATVP 267
Cdd:cd04509 256 FQFMGSDGWANVSLsLNIAEESAEGLITIKP 286
|
|
| PBP1_ABC_ligand_binding-like |
cd06345 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
22-352 |
5.79e-50 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380568 [Multi-domain] Cd Length: 356 Bit Score: 170.91 E-value: 5.79e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 22 TIALAGPETgpvTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVA-NQIVNDGVKFVIGHLCSSST 100
Cdd:cd06345 1 KIGVLGPLS---APAGEAMERGAELAVEEINAAGGILGRKVELVVADTQGKPEDGVAAAeRLITEDKVDAIVGGFRSEVV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 101 MPAAEIYDENGIVMITAASTSPELSQK------GYSTILRTIGTDLQSAPVSAAYIADVIKPKH----IALLHDKQAYGQ 170
Cdd:cd06345 78 LAAMEVAAEYKVPFIVTGAASPAITKKvkkdyeKYKYVFRVGPNNSYLGATVAEFLKDLLVEKLgfkkVAILAEDAAWGR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 171 GLVDAVAADLKARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKPVFMGADGVDNAD 250
Cdd:cd06345 158 GIAEALKKLLPEAGLEVVGVERFPTGTTDFTPILSKIKASGADVIVTIFSGPGGILLVKQWAELGVPAPLVGINVPAQDP 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 251 LF-AIAGSAAEGVLAtvpMDFSAAPENA-----AIVEAIKAKKQDPNGPFVMPSYAAVQVLGEAAKRAGSDDPETIAKTL 324
Cdd:cd06345 238 EFwENTGGAGEYEIT---LAFAAPKAKVtpktkPFVDAYKKKYGEAPNYTAYTAYDAIYILAEAIERAGSTDPDALVKAL 314
|
330 340
....*....|....*....|....*...
gi 1489639363 325 REGEYDTAIGKISFekNGDLKDFHSVVY 352
Cdd:cd06345 315 EKTDYEGVRGRIKF--DKKDEYPHDVKY 340
|
|
| PBP1_ABC_ligand_binding-like |
cd06336 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
23-338 |
6.01e-50 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380559 [Multi-domain] Cd Length: 345 Bit Score: 170.49 E-value: 6.01e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 23 IALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGF--NGKKLVVK--SYDDACEPKQAVTVANQIVN-DGVKFVIGHLCS 97
Cdd:cd06336 2 IGFLGPLSGPAAAWGLPMLRGLELAADEINAAGGIkvGGKKYKVEvvSYDDKYTPAEAVAAARRLVSqDGVKFIFGPGGS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 98 SSTMPAAEIYDENGIVMITAASTSPELSQKGYSTIlRTIGTDLQSAPVSAAYIADVIKPKHIALLHDKQAYGQGLVDAVA 177
Cdd:cd06336 82 AIAAAVQPVTERNKVLLLTAAFSDPILGPDNPLLF-RIPPTPYEYAPPFIKWLKKNGPIKTVALIAPNDATGKDWAAAFV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 178 ADLKARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHP-EAGAILRQGADQGFKPVFMGADGVD-NADLFAIA 255
Cdd:cd06336 161 AAWKAAGGEVVAEEFYDRGTTDFYPVLTKILALKPDALDLGGSSPgPAGLIIKQARELGFKGPFVSEGGAKaDEILKEVG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 256 GSAAEGVLATVPMDFSAAPENA--AIVEAIKAKKQDPNGPFVMPSYAAVQVLGEAAKRAGSDDPETIAKTLRE--GEYDT 331
Cdd:cd06336 241 GEAAEGFIGVLPADDDPIASPGakAFVERYKKKYGEPPNSESALFYDAAYILVKAMEKAGTVDDTKKIRAALAmlSPDET 320
|
....*..
gi 1489639363 332 AIGKISF 338
Cdd:cd06336 321 LFGKLKW 327
|
|
| PBP1_As_SBP-like |
cd06330 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
22-338 |
1.69e-49 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic (As) and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Pssm-ID: 380553 [Multi-domain] Cd Length: 342 Bit Score: 169.28 E-value: 1.69e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 22 TIALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIVN-DGVKFVIGHLCSSST 100
Cdd:cd06330 1 KIGVITPLSGAAAVYGEPARNGAELAVEEINAAGGILGRKIELVVRDDKGKPDEAVRAARELVLqEGVDFLIGTISSGVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 101 MPAAEIYDENGIVMITAASTSPELSQKGYST-ILRTIGTDLQSAPVSAAYIADV-IKPKHIALLHDKQAYGQGLVDAVAA 178
Cdd:cd06330 81 LAVAPVAEELKVLFIATDAATDRLTEENFNPyVFRTSPNTYMDAVAAALYAAKKpPDVKRWAGIGPDYEYGRDSWAAFKA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 179 DLKARGIEPVIVEGV--NKGQSDFSALITKLKNANVDFVY---WGGfhpEAGAILRQGADQGF--KPVFMGADGVDNADL 251
Cdd:cd06330 161 ALKKLKPDVEVVGELwpKLGATDYTAYITALLAAKPDGVFsslWGG---DLVTFVKQAKPYGLfdKTKVVSGLGGGSEVL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 252 FAIAGSAAEGVLATV--PMDFSAAPENAAIVEAIKAK-KQDPNGPfVMPSYAAVQVLGEAAKRAGSDDPETIAKTLREGE 328
Cdd:cd06330 238 QALGKEMPEGLIGGGryPFGWPDTPLNKAFVEAYRAKyGEYPTYW-AYEAYAAVMALKAAIEKAGSTDTDKVIAALEGLT 316
|
330
....*....|
gi 1489639363 329 YDTAIGKISF 338
Cdd:cd06330 317 FDTPGGKITI 326
|
|
| PBP1_ABC_HAAT-like |
cd19981 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
23-311 |
3.44e-49 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380636 [Multi-domain] Cd Length: 297 Bit Score: 167.47 E-value: 3.44e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 23 IALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIVN-DGVKFVIGHLCSSSTM 101
Cdd:cd19981 2 IGFFAPLTGPAAADGKSALHGAELAVEQINAAGGINGKKVELVVYDDQASPKQAVNIAQKLIEqDKVVAVVSGSYSGPTR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 102 PAAEIYDENGIVMITAASTSPELSqKGYSTILRTIgtdlQSAPV----SAAYIADVIKPKHIALLHDKQAYGQGLVDAVA 177
Cdd:cd19981 82 AAAPIFQEAKVPMVSAYAVHPDIT-KAGDYVFRVA----FLGPVqgraGAEYAVKDLGAKKVAILTIDNDFGKSLAAGFK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 178 ADLKARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKPVFMGADGVDNADLFAIAGS 257
Cdd:cd19981 157 EEAKKLGAEIVSEYAYALGDRDFRPILTKIKSANPDAIYASGYYAEAAPIVKQARELGIKVPIIGQEGYDSPKFIEIAGS 236
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1489639363 258 AAEGVLATVPMDF-SAAPENAAIVEAIKAK-KQDPNGPFVMpSYAAVQVLGEAAKR 311
Cdd:cd19981 237 AAEGVIITTSLNRdSDRPITQKFIKEYRKRyGIDPDMVAAS-TYDAVMVLAGEVQK 291
|
|
| PBP1_ABC_HAAT-like |
cd19986 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
23-305 |
1.26e-44 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380641 [Multi-domain] Cd Length: 297 Bit Score: 155.48 E-value: 1.26e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 23 IALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIVNDG-VKFVIGHLCSSSTM 101
Cdd:cd19986 2 IGVVAPLTGPAALNGEYQKNGAQLALEEINAAGGVLGRPLELVVEDDQGTNTGAVNAVNKLISDDkVVAVIGPHYSTQVL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 102 PAAEIYDENGIVMITAAsTSPELSQKGYSTILRTIGTDLQSAPVSAAYIADVIKPKHIALLHDKQAYGQGLVDAVAADLK 181
Cdd:cd19986 82 AVSPLVKEAKIPVITGG-TSPKLTEQGNPYMFRIRPSDSVSAKALAKYAVEELGAKKIAILYDNDDFGTGGADVVTAALK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 182 ARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKPVFMGADGVDNADLFAIAGSAAEG 261
Cdd:cd19986 161 ALGLEPVAVESYNTGDKDFTAQLLKLKNSGADVIIAWGHDAEAALIARQIRQLGLDVPVIGSSSFATPTVLLLAGEALEG 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1489639363 262 VLATVpmDFSAA---PENAAIVEAIKAKKQDPNGPFVMPSYAAVQVL 305
Cdd:cd19986 241 IYSVT--DFVPSdpdPKVQAFVKKYKAKYGEDPDLYSAWYYDAMYLL 285
|
|
| PBP1_ABC_RPA1789-like |
cd06333 |
type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, ... |
28-338 |
1.43e-39 |
|
type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, RPA1791-1793), involved in active transport of lignin-derived aromatic substrates, and its close homologs; This group includes RPA1789 (CouP) from Rhodopseudomonas palustris and its close homologs in other bacteria. RPA1789 (CouP) is the periplasmic binding-protein component of an ABC system (CouPSTU; RPA1789, RPA1791-1793) that is involved in the active transport of lignin-derived aromatic substrates. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380556 [Multi-domain] Cd Length: 342 Bit Score: 143.07 E-value: 1.43e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 28 PETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIVN-DGVKFVIGHLCSSSTMPAAEI 106
Cdd:cd06333 7 SLTGPAASLGIPERNAVELLVEQINAAGGINGRKLELIVYDDESDPTKAVTNARKLIEeDKVDAIIGPSTTGESLAVAPI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 107 YDENGIVMIT-AASTSPELSQKGYstILRTIGTDLQSAPVSAAYIADvIKPKHIALLHDKQAYGQGLVDAVAADLKARGI 185
Cdd:cd06333 87 AEEAKVPLISlAGAAAIVEPVRKW--VFKTPQSDSLVAEAILDYMKK-KGIKKVALLGDSDAYGQSGRAALKKLAPEYGI 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 186 EPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFK-PVFMGAdGVDNADLFAIAGSAAEGVLA 264
Cdd:cd06333 164 EIVADERFARTDTDMTAQLTKIRAAKPDAVLVWASGPPAALVAKNLRQLGYKgPIYQSH-GAANQDFIKLAGKAAEGVIL 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 265 TVP--MDFSAAPEN-------AAIVEAIKAKKQDPNGPFVMPSYAAVQVLGEAAKRAGSDDPETIAKTLRE-GEYDTAIG 334
Cdd:cd06333 243 PAGklLVADQLPDSdpqkkvlLEFVKAYEAKYGEGPSTFAGHAYDALLLLVEAIEPAGGTDRAALRDALENtKGLVGVTG 322
|
....
gi 1489639363 335 KISF 338
Cdd:cd06333 323 VYNF 326
|
|
| PBP1_ABC_HAAT-like |
cd19985 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
23-343 |
1.76e-36 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380640 [Multi-domain] Cd Length: 321 Bit Score: 134.33 E-value: 1.76e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 23 IALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIVNDGVKFVIGHLCSSSTMP 102
Cdd:cd19985 2 IAVVGPMSGKSASKGKSMLRGAELYIDQINAAGGINGKKVKLDVFDDQNDPDAARKAAQIIVSDKALAVIGHYYSSASIA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 103 AAEIYDENGIVMITAASTSPELSQ--KGYstiLRTIGTD-LQSAPVsAAYIADVIKPKHIALLHDKQAYGQGLVDAVAAD 179
Cdd:cd19985 82 AGKIYKKAGIPAITPSATADAVTRdnPWY---FRVIFNDsLQGRFL-ANYAKKVLKKDKVSIIYEEDSYGKSLASVFEAT 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 180 LKARGIEPVIVEGVNKGQSDFSA----LITKLKNA--NVDFVYWGGFHPEAGAILRQGADQGFKPVFMGADGVDN---AD 250
Cdd:cd19985 158 ARALGLKVLKKWSFDTDSSQLDQnldqIVDELKKApdEPGVIFLATHADEGAKLIKKLRDAGLKAPIIGPDSLASesfAQ 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 251 LFA-------IAGSAAEGVLATVPMDFSAAPENA-AIVEAIKAKKQDPngpfvmPSYAAVqvlgeaakragsddpetiak 322
Cdd:cd19985 238 GFAeypeekeEPGYYTDGIYATSPFIFDIANEKAqKFRDTYQKRYGEE------PSWIAA-------------------- 291
|
330 340
....*....|....*....|....
gi 1489639363 323 tlreGEYDTA---IGKISFEKNGD 343
Cdd:cd19985 292 ----FAYDAAmlaIGNIYFDSNGD 311
|
|
| PBP1_ABC_ligand_binding-like |
cd19982 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
28-305 |
4.98e-36 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380637 [Multi-domain] Cd Length: 302 Bit Score: 132.79 E-value: 4.98e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 28 PETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIVN-DGVKFVIGHLCSSSTMPAAEI 106
Cdd:cd19982 7 SLTGPFAPFGEMFKNGYEMALEEINAAGGIKGKKLELVIEDDQSKPQTALAAAEKLVSqDKVPLIVGGYSSGITLPVAAV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 107 YDENGIVMITAASTSPELSQKGYSTILRTIGTDLQSAPVSAAYIADVIKPKHIALLHDKQAYGQGLVDAVAADLKARGIE 186
Cdd:cd19982 87 AERQKIPLLVPTAADDDITKPGYKYVFRLNPPASIYAKALFDFFKELVKPKTIAILYENTAFGTSVAKAARRFAKKRGIE 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 187 PVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKP-VFMGAD-GVDNADLFAIAGSAAEGVLA 264
Cdd:cd19982 167 VVADESYDKGATDFKPLLNKVKAANPDVVYMVSYLNDAILLMRQAKELGLNPkLFAGGGaGFTIPEFLKQAGPLAEYVVT 246
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1489639363 265 TVPMDFSAA-PENAAIVEAIKAKKQDPNGPFVMPSYAAVQVL 305
Cdd:cd19982 247 ATLWSPDVKyPGAKEFYEKYKAKYGVEPSYHEAEAYAALYVA 288
|
|
| PBP1_SBP-like |
cd19989 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
22-305 |
4.52e-34 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380644 [Multi-domain] Cd Length: 299 Bit Score: 127.39 E-value: 4.52e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 22 TIALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIV-NDGVKFVIGHLCSSST 100
Cdd:cd19989 1 KIGVLTPLSGPYAALGEEARRGAQLAVEEINAAGGILGRPVELVVEDTEGKPATAVQKARKLVeQDGVDFLTGAVSSAVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 101 MPAAEIYDENGIVMITAASTSPELSQKGYS-TILRTIGTDLQSAPVSAAYIADvIKPKHIALLHDKQAYGQGLVDAVAAD 179
Cdd:cd19989 81 LAVAPKAAELKVPYLVTVAADDELTGENCNrYTFRVNTSDRMIARALAPWLAE-NGGKKWYIVYADYAWGQSSAEAFKEA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 180 LKARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFK---PVFMGADGVDNADLFAIaG 256
Cdd:cd19989 160 IEELGGEVVGTLFAPLGTTDFSSYITQISDSGADGLLLALAGSDAVNFLKQAGQFGLGkkyKIVGGILSIEPLALPAL-G 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1489639363 257 SAAEGVLATVPMDFSA-APENAAIVEAIKAKKQDPNGPFVMPSYAAVQVL 305
Cdd:cd19989 239 DAAEGVYGGVRYPPTLdTPANRAFVEAYEKEYGEAPDNFAGEAYEAMQAL 288
|
|
| PBP1_ABC_ligand_binding-like |
cd19978 |
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to ... |
21-341 |
9.34e-34 |
|
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in the uptake of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally, however.
Pssm-ID: 380633 [Multi-domain] Cd Length: 341 Bit Score: 127.69 E-value: 9.34e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 21 ITIALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIVN-DGVKFVIGHLCSSS 99
Cdd:cd19978 1 IRLGMSAALSGPAAELGNEMKRGIEAAFNEVNAQGGVNGRKIKLIALDDGYEPDRTVKNTKKLIEeDKVFALIGYVGTPT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 100 TMPAAEIYDENGIVMITAASTSPELSQKGYSTILRTIGTDLQSAPVSAAYIADVIKPKHIALLHDKQAYGQGLVDAVAAD 179
Cdd:cd19978 81 ALAALPLANEKKIPLFGPFTGAEFLRTPFLPYVFNLRASYADETEALVDYLVKTLGPKRIAIFYQNDAFGLAGLEGAKKA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 180 LKARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKPVFMGADGVDNADLFAIAGSAA 259
Cdd:cd19978 161 LKKRGLTPVAEGSYTRNTLDVEEALAKILKAKPEAIILVGTYAPAAEFIRLARAAGLNPLFANVSFVGSEALALELGDYG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 260 EGVLAT--VPMDFSaapENAAIVEAIKA--KKQDPNGP--FV-MPSYAAVQVLGEAAKRAGSD-DPETIAKTLREGEYDT 331
Cdd:cd19978 241 EGVIVSqvVPDPND---SSLPIVKEYREamKKYGPNAPpdFVsLEGYLAARLLVEALKKAGPPlTREKLLALEESLKNDL 317
|
330
....*....|.
gi 1489639363 332 AIG-KISFEKN 341
Cdd:cd19978 318 GKGlTLTFSPN 328
|
|
| ANF_receptor |
pfam01094 |
Receptor family ligand binding region; This family includes extracellular ligand binding ... |
41-357 |
3.81e-31 |
|
Receptor family ligand binding region; This family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure.
Pssm-ID: 460062 [Multi-domain] Cd Length: 347 Bit Score: 120.57 E-value: 3.81e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 41 KIGAEAAIDFLNANGGFNGK-KLVVKSYDDACEPKQAVTVANQIVNDGVKFVIGHLCSSSTMPAAEIYDENGIVMITAAS 119
Cdd:pfam01094 3 LLAVRLAVEDINADPGLLPGtKLEYIILDTCCDPSLALAAALDLLKGEVVAIIGPSCSSVASAVASLANEWKVPLISYGS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 120 TSPELSQKG-YSTILRTIGTDLQSAPVsaayIADVIKP---KHIALLHDKQAYGQGLVDAVAADLKARGIEPVIVEGVNK 195
Cdd:pfam01094 83 TSPALSDLNrYPTFLRTTPSDTSQADA----IVDILKHfgwKRVALIYSDDDYGESGLQALEDALRERGIRVAYKAVIPP 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 196 GQ--SDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKP---VFMGADGVDNADLFAIAGS--AAEGVLATVPM 268
Cdd:pfam01094 159 AQddDEIARKLLKEVKSRARVIVVCCSSETARRLLKAARELGMMGegyVWIATDGLTTSLVILNPSTleAAGGVLGFRLH 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 269 DfsaaPENAAIVEAIKAKKQDPNGPFVMPS----------YAAVQVLGEAAKRAGSDDP--------------ETIAKTL 324
Cdd:pfam01094 239 P----PDSPEFSEFFWEKLSDEKELYENLGglpvsygalaYDAVYLLAHALHNLLRDDKpgracgalgpwnggQKLLRYL 314
|
330 340 350
....*....|....*....|....*....|...
gi 1489639363 325 REGEYDTAIGKISFEKNGDLKDFHSVVYELHAD 357
Cdd:pfam01094 315 KNVNFTGLTGNVQFDENGDRINPDYDILNLNGS 347
|
|
| PBP1_AmiC-like |
cd06331 |
type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system ... |
23-340 |
8.13e-31 |
|
type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF); This group includes the type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Pssm-ID: 380554 [Multi-domain] Cd Length: 333 Bit Score: 119.63 E-value: 8.13e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 23 IALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIVN-DGVKFVIGHLCSSSTM 101
Cdd:cd06331 2 IGLLTPLSGPASVYGRAIANGAELAVEEINAAGGVLGRPVELVVEDDASDPATAVAAARRLIQqDKVDAIVGPITSATRN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 102 PAAEIYDENGIVMITAAS-----TSPELsqkgystilrtigtdLQSAPVSAAYIADVIKP------KHIALLHDKQAYGQ 170
Cdd:cd06331 82 AVAPVAERAKVPLLYPTFyeggeCSPYL---------------FCFGEVPNQQLDPLIPWlmeeygKKFYLIGSDYVWPR 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 171 GLVDAVAADLKARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKPVF-MGADGVDNA 249
Cdd:cd06331 147 TMNDAARRVIEAHGGEVVGEEYLPLGTTDFSSVIEKIKASGADVVLSTLVGADAVTFLKQFAAAGLRRKVrIAALLFDEN 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 250 DLFAIAGSAAEGVLATVPMdFSA--APENAAIVEAIKAK---KQDPNGPFVMPSYAAVQVLGEAAKRAGSDDPETIAKTL 324
Cdd:cd06331 227 TLAGLGAEAAEGIYSVLSY-FQSldTPENKAFVAAYRKKfgeDAPPITSLSEAAYEAVHLYAAAVEKAGSTDPEAVIAAL 305
|
330
....*....|....*.
gi 1489639363 325 REGEYDTAIGKISFEK 340
Cdd:cd06331 306 PGVSFDGPQGPVTMDP 321
|
|
| PBP1_SBP-like |
cd06328 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
23-340 |
8.23e-29 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380551 [Multi-domain] Cd Length: 336 Bit Score: 114.32 E-value: 8.23e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 23 IALAGPETGPVTQYGTIQKIGAEAAIDF-LNANGGFNGKKLVVKSYDDACEPKQAVTVANQIV-NDGVKFVIGHLCSSST 100
Cdd:cd06328 2 IGVITSLTGPLAAYGKQTERGFELGLEYaTDGTMEVDGRKIEVIVKDDQGDPDTAKAAATELIgDDGVDILVGTVSSAVA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 101 MPAAEIYDENGIVMITAASTSPELSQKGYST-ILRTIGTDLQSAPVSAAYIADVIKpKHIALLHDKQAYGQGLVDAVAAD 179
Cdd:cd06328 82 LALAPVAEQNKKILIVGPAAADSITGENWNKyTFRTSRNSWQDAIAGAKALADPLG-KSVAFLAQDYAFGQDGVAAFKKA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 180 LKARGIEPVIVEGVNKGQSDFSALITKLKNANVD--FVYWGGfhPEAGAILRQGADQGFKPVFMGADGVDNADLFAIAGS 257
Cdd:cd06328 161 LEAKGGKIVGEELVPVTTTDFTPYLQRILDAKPDvlFVAWAG--TGALTLWQQLADQGVLDDIKVVTGGPDIATLAALGD 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 258 AAEGV--LATVPMDFSAAPENAAIVEAIKAKKQDPNGPFVMPSYAAVQVLGEAAKRAGSD-DPETIAKTLREGEYDTAIG 334
Cdd:cd06328 239 ALPGIegLTYYYYGLPKNPVNDWLVKAHKERYNAPPDLFTAGGFAAAQAVVRALEKAGGDtDVEKLIAALEGLTFETPKG 318
|
....*.
gi 1489639363 335 KISFEK 340
Cdd:cd06328 319 KMTIRA 324
|
|
| PBP1_aromatic_compounds-like |
cd06332 |
type 1 periplasmic binding proteins of active transport systems predicted to be involved in ... |
22-343 |
1.25e-28 |
|
type 1 periplasmic binding proteins of active transport systems predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; This group includes the type 1 periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Pssm-ID: 380555 [Multi-domain] Cd Length: 336 Bit Score: 113.46 E-value: 1.25e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 22 TIALAGPETGPVTQYGTIQKIGAEAAIDflNANGGFNGKKLVVKSYDDACEPKQAVTVANQ-IVNDGVKFVIGHLCSSST 100
Cdd:cd06332 1 KIGLLAPLTGPFAALGEDMVRGFELALE--EVGGEVAGRKVELVVEDDAGDPDTAVTKARKlVEQDKVDVLIGPLSGDEG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 101 MPAAEIYDENGIVMITAASTSPELSQKGYS-TILRTIGTDLQ-SAPVsAAYIADVIKPKHIALLHDKQAYGQGLVDAVAA 178
Cdd:cd06332 79 LAVAPYAKEPGVPFINPVAGADDLTQRAKApNFFRTSFTGSQwSAPL-GDYAYKELGYKKVATIGSDYAFGYEQAAGFKR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 179 DLKARGIEPVIVEGVNKGQSDFSALITKLKNAnVDFVYWGGFHPEAGAILRQGADQGFK---PVFMGADGVDNADLFAIa 255
Cdd:cd06332 158 GFEAAGGEVVQEIWVPLGTTDFSPYIAQIPSA-DDAVFAFLGGADAVRFLKQYREFGLKdkiPLIGGGTTVDESVLPAM- 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 256 GSAAEGVLATVPmdFSAA---PENAAIVEAIKAK-KQDPNGpFVMPSYAAVQVLGEAAKRAGSD--DPETIAKTLREGEY 329
Cdd:cd06332 236 GDAALGIISASH--YAEGldnPENKKFVAAYKKKfGKLPSL-YAAGGYDGAQAILEALEAVGGDvsDKQALAAALRKVKF 312
|
330
....*....|....
gi 1489639363 330 DTAIGKISFEKNGD 343
Cdd:cd06332 313 DSPRGPFSFDENRN 326
|
|
| PBP1_SBP-like |
cd06329 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
23-337 |
2.06e-28 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380552 [Multi-domain] Cd Length: 343 Bit Score: 113.14 E-value: 2.06e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 23 IALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIVNDGVKFVIGHLCSSST-- 100
Cdd:cd06329 2 IAFIDPLSGPFASVGEIYLKGLQFAIEEINAGGGLLGRKIELVPFDNKGSPQEALIQLKKAIDQGIRFVLQGNSSAVAga 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 101 -MPAAEIYDE----NGIVMITAASTSPELSQKGYStiLRTIGTDLQSAPVSAAyIADVIKP----KHIALLHDKQAYGQG 171
Cdd:cd06329 82 lIDAIEKHNQrnpdKRVLFLNYGAEAPELTGAKCS--FWHFRFDANADMKMAA-LADYMKKdgsiKKVYLINQDYSFGRD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 172 LVDAVAADLKARGIEPVIVeG-----VNKGQsDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKPVFMGADGv 246
Cdd:cd06329 159 VAAAAKKNLKKKRPDIEIV-GedlhpLGKVK-DFSPYIAKIKASGADTVITGNWGNDLTLLMKAARDSGLKAPFYTYYA- 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 247 DNADLFAIAGSAAEGVLATVPMDFSAA--PENAAIVEAIKAKKQDPNGPFVMPSYAAVQVLGEAAKRAGSDDPETIAKTL 324
Cdd:cd06329 236 DGPGAPAAIGEAGVGRLVAVAYWHPNPktPELEKFAEAFRAKYGRYPDFNIGRTYMGVEMLAAAIKKAGSTDPEKVAKAL 315
|
330
....*....|...
gi 1489639363 325 REGEYDTAIGKIS 337
Cdd:cd06329 316 EGLSFDTPGGPVT 328
|
|
| PBP1_ABC_ligand_binding-like |
cd06334 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
22-319 |
3.45e-27 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380557 [Multi-domain] Cd Length: 360 Bit Score: 110.02 E-value: 3.45e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 22 TIALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIVN-DGVKFVIGhLCSSST 100
Cdd:cd06334 1 KIGLLTDLTGPTADVGKPYAQGVRDYLNYVNEEGGINGVKIELEECDTGYKVPRAVACYKRLKAqDGVVAILG-WGTGDT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 101 MPAAEIYDENGIVMITAASTSPELSQKGYSTILRTIGTDLQS-APVSAAYIAD----VIKPKHIALLHDKQAYGQGLVDA 175
Cdd:cd06334 80 EALAPRVAKDKIPYISASYGRSLADDGKVFPYNFFVGATYSSqARALLKYIAQewggKLKGPKVAFVYHDSPFGREPIPA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 176 VAADLKARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKPVFMGADGVDNADLFAIA 255
Cdd:cd06334 160 LKAYAKELGFEVVAEQVPSPGALDATAQWLRIRRAGPDYVIIQGTGGSVAVIIKDAKRLGLKTKFIGNIWGGDEDLIKLA 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 256 GSAAEGVLATVPMDF-SAAPENAAIVEAIKAKKQDPNGPFVMPSY-----AAVQVLGEAAKRAGSDDPET 319
Cdd:cd06334 240 GDAAEGYVGVSPFAFgTDDPPGKEIVEEVAKKGKGDGPEEVGTVYynrgwATAMLAVEAIRRADKAGGGT 309
|
|
| PBP1_ABC_ligand_binding-like |
cd06326 |
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to ... |
21-315 |
3.48e-26 |
|
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally, however.
Pssm-ID: 380549 [Multi-domain] Cd Length: 339 Bit Score: 106.86 E-value: 3.48e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 21 ITIALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIV-NDGVKFVIGHLCSSS 99
Cdd:cd06326 1 IVIGQSAPLSGPLAELGREYLAGAKAYFDQVNAAGGINGRKIRLVTLDDGYDPARTVENTRQLIeQDKVVALFGYVGTAN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 100 TMPAAEIYDENGIVMITAASTSPELSQKGYSTILrtigtdlqsaPVSAAYIADV---------IKPKHIALLHDKQAYGQ 170
Cdd:cd06326 81 VEAVLPLLEEAGVPLVGPLTGADSLREPGNPYVF----------HVRASYADEVekivrhlatLGLKRIAVVYQDDPFGK 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 171 GLVDAVAADLKARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKPVFMGADGVDNAD 250
Cdd:cd06326 151 EGLAAAEAALAARGLEPVATAAVARNAADVAAAAAALAAAKPQAVVLIAAGKAAAAFIKALRAAGGAAQFYGLSVVGAAA 230
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1489639363 251 LFAIAGSAAEGVLAT--VPMDFSAApenAAIV----EAIKAKKQDPNGPFVMPSYAAVQVLGEAAKRAGSD 315
Cdd:cd06326 231 LAKALGDAARGVVVSqvVPNPWSTT---LPLVreyqAAMKAAGPKEPSYASLEGYIAARVLVEALRRAGRN 298
|
|
| PBP1_ABC_HAAT-like |
cd19983 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
23-305 |
1.19e-25 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380638 [Multi-domain] Cd Length: 303 Bit Score: 104.59 E-value: 1.19e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 23 IALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIVNDGVKFVIGHLCSSSTMP 102
Cdd:cd19983 2 IGFVGGLTGRYSDLGVQGRNGAQLAVEEINAAGGINGRPVELIIRDDQQDPEAAKAADRELIAGGVVAIIGHMTSAMTVA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 103 AAEIYDENGIVMITAASTSPELSQKGySTILRTIGTDLQSAPVSAAYIADVIKPKHIALLHDK--QAYGQGLVDAVAADL 180
Cdd:cd19983 82 VLPVINEAKVLMISPTVSTPELSGKD-DYFFRVTPTTRESAQALARYAYNRGGLRRVAVIYDLsnRAYSESWLDNFRSEF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 181 KARGIEPVIVEGVNKG-QSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKPVFMGADGVDNADLFAIAGSAA 259
Cdd:cd19983 161 EALGGRIVAEIPFSSGaDVDFSDLARRLLASKPDGLLLVASAVDTAMLAQQIRKLGSKIPLFSSAWAATEELLELGGKAV 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1489639363 260 EGVLATVPMD-FSAAPENAAIVEAIKAKKQDPNGPFVMPSYAAVQVL 305
Cdd:cd19983 241 EGMLFSQAYDrNSSNPRYLAFKEAYEERFGREPSFAAAYAYEAAMVL 287
|
|
| PBP1_ABC_ligand_binding-like |
cd06341 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
43-334 |
2.38e-22 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380564 [Multi-domain] Cd Length: 340 Bit Score: 96.22 E-value: 2.38e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 43 GAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIV-NDGVKFVIGHLcSSSTMPAAEIYDENGIVMITAASTS 121
Cdd:cd06341 22 GAEARFGLANAAGGINGRKVEYVWCDDQSDPATNLQAARQLVeDEKVFALVGSS-SAASGSANDYLAQAGIPVVGGAGVS 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 122 PELSQKGYSTILRTIGTDLQSapVSAAYIADVIKPKHIALLHDKQAYGQGLVDAVAADLKARGIEPVIVEGVNKGQSDFS 201
Cdd:cd06341 101 VWCFRNMFSNFFSLGGGGSTT--TYGQYAAALGGTKAAVVVTDIPAASQQLAQQLAASLRAAGVEVVGTAPYAAAAPDYT 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 202 ALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKPVFMGADGVDNADLFAIAGSAAEGVLATVPMD--FSAAPENAAI 279
Cdd:cd06341 179 AVAQAAKAAGADAVVGVLDPDVAARVLKAARAQGLDLKVALSPSGYDPSVLAAYGAALAGVSVASTFLpfEADTPAVKAY 258
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1489639363 280 VEAIKA---KKQDPNGPFVMPSYAAVQVLGEAAKRAGSDD-PETIAKTLREGEYDTAIG 334
Cdd:cd06341 259 RAAMAKyapELQDPLQQFALSGYIAADLFVRGLEAAGGCPtRAAFIKALRDVKDYDAGG 317
|
|
| PBP1_alkylbenzenes-like |
cd06360 |
type 1 periplasmic binding component of active transport systems predicted be involved in ... |
22-342 |
4.09e-21 |
|
type 1 periplasmic binding component of active transport systems predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; This group includes the type 1 periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Pssm-ID: 380583 [Multi-domain] Cd Length: 357 Bit Score: 93.13 E-value: 4.09e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 22 TIALAGPETGPVTQYGTIQKIGAEAAIDflNANGGFNGKKLVVKSYDDACEPKQAVTVANQIV-NDGVKFVIGHLCSSST 100
Cdd:cd06360 1 KIGVLLPLTGPLAVNGEDVRDGFELYFD--EIGNQVAGRKIELIVEDDEGKPDVGLTKARKLVeRDKVHVLAGIVSSAVA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 101 MPAAEIYDENGIV-MITAASTSPELSQKGYSTILRTIGTDLQSAPVSAAYIADVIKPKHIALLHDKQAYGQGLVDAVAAD 179
Cdd:cd06360 79 YAVRDYVVEQKIPlVISNAGAAPLTQELASPYIFRTSFSNGQYDAPFGQYAYEKLGYRRIAVMASDYAAGHEQAGAFART 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 180 LKARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFK---PVFMGADGVDNADLFAIaG 256
Cdd:cd06360 159 FKQAGGKVVQEIYPPLGTADFAPYLARIQQDAADAVWAFFAGADAIRFVKQYDEYGLKgklPLVGIGGLVDDAILPEQ-G 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 257 SAAEGVLATVPmdFSAA---PENAAIVEAIKAKKQDPNGPFVMPSYAAVQVLGEAAKRAGSD--DPETIAKTLREGEYDT 331
Cdd:cd06360 238 DAALGIVSYLH--YSAAldtPENKAFVQAYRKKYGRDPGLYAEGGYVAARAIAEALEAVKGNveDKEAFLEALRKVRFEA 315
|
330
....*....|.
gi 1489639363 332 AIGKISFEKNG 342
Cdd:cd06360 316 PRGPFRFDPYQ 326
|
|
| PBP1_SBP-like |
cd19987 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
22-335 |
8.38e-21 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380642 [Multi-domain] Cd Length: 353 Bit Score: 92.01 E-value: 8.38e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 22 TIALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFN------------GKKLVVKSYDDACEPKQAVTVANQ-IVNDGV 88
Cdd:cd19987 1 TIGLNVPLSGPYAPQGEDQRRGFELAVDHLNNGGGLVdkdsrlsgdgilGKKVELVTADTETKADTAVDNAKRlIEQDGA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 89 KFVIGHLCSSSTMPAAEIYDENGIVMITAASTSPELSQK-GYSTILRTIGTDLQSAPVSAAYIADVI-KPKHIALLHDKQ 166
Cdd:cd19987 81 VMITGGSSSAVAVAAQKLAQKEGVLYFAGLSHSNDTTGKdCHRYGFRECFNAHMSAKALAPYLVEKFgKDRKYFYLTADY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 167 AYGQGLVDAVAADLKARGIEPVIVEGVNKGQSDFSALITKLKNANVD---FVYWGGFHPEAgaiLRQGADQGFK------ 237
Cdd:cd19987 161 TWGHSTEQSMREYTEAHGWKTVGNPATPLGETDFSAALLNAADSGADvlvLVLFGRDMVNA---LKQAKQFGLLkkmdiv 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 238 ----PVFMgADGVdnadlfaiAGSAAEGVLATVPMDFSAAPENA---AIVEAIKAKKQDPNGPFVMPSYAAVQVLGEAAK 310
Cdd:cd19987 238 vpllTAFM-AESV--------GPEIMEGVLGTVNWHWSLPDDYSyafGKAEAFEKEYGAYPSQAAASAYVQVLQYAAAVE 308
|
330 340
....*....|....*....|....*
gi 1489639363 311 RAGSDDPETIAKTLREGEYDTAIGK 335
Cdd:cd19987 309 RAGSFDPPAVIRALEGHEYTLLKGE 333
|
|
| PBP1_RPA0668_benzoate-like |
cd20014 |
type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the ... |
23-341 |
8.96e-19 |
|
type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the active transport of lignin-derived benzoate derivative compounds, and its close homologs; This group includes RPA0668 from Rhodopseudomonas palustris and its close homologs in other bacteria. Rpa0668 is the periplasmic binding-protein component of an ABC system that is involved in the active transport of lignin-derived benzoate derivative compounds. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380667 [Multi-domain] Cd Length: 346 Bit Score: 86.14 E-value: 8.96e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 23 IALAGPETGPVTQYGTiqkiGAEAAID-FLNANGG-FNGKKLVVKSYDDACEPKQAVTVANQIV-NDGVKFVIGHLCSSS 99
Cdd:cd20014 2 IGLLLPYSGVYAALGE----DIRNGFQlYLDEHGGkLGGRPIELVKEDDEADPDVALQKARKLIeQDKVDVLVGPVSSGV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 100 TMPAAEIYDENGIVMITAASTSPELSQK-GYSTILRTIGTDLQSAPVSAAYIADVIKPKHIALLHDKQAyGQGLVDAVAA 178
Cdd:cd20014 78 ALAIRDVVEQAKVPLIVANAGANALTRAaCSPYIFRTSFSNWQLGYALGKYAAENVGKTVVTIASDYAA-GREVVAGFKE 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 179 DLKARGIEPVIVEGVNKGQS-DFSALITKLKNANVDFVYwgGFHPEAGAI--LRQGADQGFKPV--FMGADGVDNADLFA 253
Cdd:cd20014 157 GFEAAGGKVVGEIWTPLGTTtDFSPYLTQIAASGPDAVY--AFFAGADAVrfVKQYAEFGLKGKipLYGPGFLTDEDVLP 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 254 IAGSAAEGVLATVP-MDFSAAPENAAIVEAIKAKKQDPNGPFVMPSYAAVQVLGEAAKRAGSD--DPETIAKTLREGEYD 330
Cdd:cd20014 235 ALGEAAEGIITVLHyAPTLDNPANRAFVAAYQAKYGRLPDVYAVQGYDAAQVIDAALEAVGGDtsDKDILAAALELGSID 314
|
330
....*....|.
gi 1489639363 331 TAIGKISFEKN 341
Cdd:cd20014 315 SPRGPFRFDPT 325
|
|
| PBP1_SBP-like |
cd20378 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
22-335 |
5.86e-17 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380668 [Multi-domain] Cd Length: 357 Bit Score: 80.85 E-value: 5.86e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 22 TIALAGPETGPVTQYGTIQKIGAEAAIDFLnanGGFNGKKLVVKSYDDACEPKQAVTVANQIVN-DGVKFVIGHLCSSST 100
Cdd:cd20378 1 TLGGLVSMSGAFAAAGKLADRGMRLAVEEY---GGALGRPLKYITRDTEGKPGTGVRKVQEAIAqDGARFFIGGTLSSVA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 101 MPAAEIYDENGIVMITAAStSPELSQKG------------YSTILRTIgtdlqsAPVSAAYIadviKPKHIALLHDKQAY 168
Cdd:cd20378 78 LAVSEEAEKAGGVYITSGG-ADEITGSRcnrstfrwsvptYGAIRQTV------RPVIKAMP----KAKRWYTITPQYVF 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 169 GQGLVDAVAADLKARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKP----VFMGAD 244
Cdd:cd20378 147 GESLLKNAKEVLKEKGIEHVGNSYHSLGEREFSGYLTKAMAARPDVLLILNFGSQAVDALRQAVSFGLKRkmkiLVAWSS 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 245 GVDNadLFAIAGSAAEGVLATVPMDFSA-APENAAIVEAIKAKKQDPNGPFVMPSYAAVQVLGEAAKRAGSDDPETIAKT 323
Cdd:cd20378 227 GLDQ--FQELGPDICEGVYFGAQYWHDVdTPANKALVKVYQAKFKETPSYALAAGYACTRMLLDAIDKAGSTDPAAVIKA 304
|
330
....*....|..
gi 1489639363 324 LREGEYDTAIGK 335
Cdd:cd20378 305 LEGLKYDGITGD 316
|
|
| PBP1_AmiC |
cd06357 |
periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding ... |
29-336 |
8.40e-17 |
|
periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding fold protein family; This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Pssm-ID: 380580 [Multi-domain] Cd Length: 357 Bit Score: 80.70 E-value: 8.40e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 29 ETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQ-IVNDGVKFVIGhLCSSST----MPA 103
Cdd:cd06357 8 QTGVTAIIEQSMLNGALLAIEEINAAGGVNGRPIEPVVYDPASDPDRYRELAERlLLEDGVRHIFG-CYTSASrkavLPV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 104 AEIYD---------------ENgiVMITAAStspeLSQkgystilrtigtdlQSAPVsAAYIADVIKPKhIALLHDKQAY 168
Cdd:cd06357 87 VERHNallwyptpyegfeysPN--VIYTGAV----PNQ--------------HLLPL-ARYLLAHFGKR-VFLVGSNYVY 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 169 GQGlVDAVAADL-KARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKPVFM--GADG 245
Cdd:cd06357 145 PWE-SNRVARELiEASGGEVVGERYVPLGDTDFAEIIEEIKSLKPDVVFSTLVGDSIYAFYRAYAEAGLDPADMpiASLT 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 246 VDNADLFAIAGSAAEGVLATVPMdFSA--APENAAIVEAIKAKKQDPNGP--FVMPSYAAVQVLGEAAKRAGSDDPETIA 321
Cdd:cd06357 224 TSEAEVAAIGAEAAAGHYTSAPY-FQSidTPENRAFVEAYRARFGDDAVTsaVAEAAYFQVHLLARAIERAGSDDPEAIR 302
|
330
....*....|....*
gi 1489639363 322 KTLREGEYDTAIGKI 336
Cdd:cd06357 303 AALYGQEFDAPQGPV 317
|
|
| PBP1_amide_urea_BP-like |
cd06356 |
periplasmic component (FmdD) of an active transport system for short-chain amides and urea ... |
30-337 |
4.79e-16 |
|
periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF); This group includes the type 1 periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Pssm-ID: 380579 [Multi-domain] Cd Length: 334 Bit Score: 78.11 E-value: 4.79e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 30 TGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQ-IVNDGVKFVIGHLCSSSTMPAAEIYD 108
Cdd:cd06356 9 SGGLNIYGKPMVHAMKLAVEEINAAGGLLGRQIELVAYDTQSDMQKYTQYAQQlILRDKVDVVFGGITSASREAIRPILR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 109 ENGI----------------VMITAASTSPELSQ------KGYSTILRTIGTDLQsapvsaayiadvikpkhiallhdkq 166
Cdd:cd06356 89 RNKIlyfyntqyeggvcdknTFCTGSTPEQQVSPliewaiKKYGKKVYIIAADYN------------------------- 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 167 aYGQGLVDAVAADLKARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFK---PVFMGA 243
Cdd:cd06356 144 -FGQISADWVKKYAKKNGGEVVGEEFFPLDVTDFGPTIQKIQAAKPDFVVSLLVGGNHISFYRQWAAAGLKkkiPIVSTV 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 244 DGVDNADLfAIAGSAAEGVLATVP-MDFSAAPENAAIVEAIKAKKqdPNGPFV----MPSYAAVQVLGEAAKRAGSDDPE 318
Cdd:cd06356 223 FGAGNEHK-VLSPPELEGMYVSYSyFEELDTPANKAFVAKWRAKY--GDEPYInqeaVGVYNAVYLWAEAVEKAGSTERE 299
|
330 340
....*....|....*....|
gi 1489639363 319 TIAKTLREGE-YDTAIGKIS 337
Cdd:cd06356 300 AVIAALESGIsFDGPSGTVT 319
|
|
| PBP1_ABC_ligand_binding-like |
cd06337 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
22-338 |
1.41e-15 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380560 [Multi-domain] Cd Length: 354 Bit Score: 76.96 E-value: 1.41e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 22 TIALAGPETGPVTQYGTIQKIGAEAAIDFLNANGGFNGKKLV---VKSYDDACEPKQAVTVANQIV-NDGVKFVIGHLCS 97
Cdd:cd06337 1 KIGRVSPLTGPLAAFGEADPWVLEQIREAFADGGIKVGGKKYpveIVVRDSQSDPNRAGEAARDLIlRDKVDLMLASGTP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 98 SSTMPAAEIYDENGIVMITaaSTSP---------ELSQKGY-STILRTIGTDlQSAPVSAAYIADVIKPKHIALLHDKQA 167
Cdd:cd06337 81 DTVNPVADQCEANGVPCIS--TDAPwqawffgrgGDPAKGFkWTFHFFWGLE-DIAANFLGMWDQVPTNKVVGLLWPNDP 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 168 YGQGLVDAVAADLKARGIEPVIVEGVNKGQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKP--VFMGAdg 245
Cdd:cd06337 158 DGTAFADAFLGLPAAAGYTLVDPGRFPPGTDDFSSIINAFKKAGVEIVTGVMIPPDFATFWRQAAQQGFKPkvVTIGK-- 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 246 vdnADLF----AIAGSAAEGVLATV------PMDFSAAPENAAivEAIKAKKQDPNGPFVMP---SYAAVQVLGEAAKRA 312
Cdd:cd06337 236 ---ALLFpsavAALGDLGDGLSTEVwwspahPFKSSLTGQTAA--ELADAYEKATGKQWTQPlgyAHALFEVAVDALKRA 310
|
330 340
....*....|....*....|....*.
gi 1489639363 313 GSDDPETIAKTLREGEYDTAIGKISF 338
Cdd:cd06337 311 GSPDDEAVRAALADTDLDTIVGPVDF 336
|
|
| PBP1_ABC_ligand_binding-like |
cd19979 |
amino acid amide ABC transporter substrate binding protein haat family; This subgroup includes ... |
41-316 |
8.77e-14 |
|
amino acid amide ABC transporter substrate binding protein haat family; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380634 [Multi-domain] Cd Length: 350 Bit Score: 71.49 E-value: 8.77e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 41 KIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQIVNDG-VKFVIGHLCSSSTMPAAEIYDENGIVMITAAS 119
Cdd:cd19979 20 KRGIQLAIDEINAAGGLLGRKLELVAKDHRGNPARGVDNLREFAADPdVLAVFGGLHSPVLLAELDFIHELKIPYLVPWA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 120 TSPELSQKGYST--ILRTIGTDLQSAPVSAAYIADViKPKHIALLHDKQAYGQGLVDAVAADLKARGIEPVIVEGVNKGQ 197
Cdd:cd19979 100 AATPITRNGYSPnyIFRLSVDDSLAGPFLVEYALKK-GCKRPALLLENTGWGRSNLKAMTKALAKKGLQPVGVEWFNWGD 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 198 SDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKPVFMGADGVDNADLFAIAGSAAEGVLATVPMDFSAA---- 273
Cdd:cd19979 179 TDAKPQLRALKAAGADAILLVANAPEGAAIVKALAALPERLPIISHWGITGGDFPELPREALSKIDLRFIQTFSFFdanq 258
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1489639363 274 -PENAAIVEAIKAKKQDPNGPFVMPS-------YAAVQVLGEAAKRAGSDD 316
Cdd:cd19979 259 sPRGKQVLARYKRRYPVEDPESDIPApvgfahaYDLTHLLALAIEQAGSTD 309
|
|
| PBP1_YraM_LppC_lipoprotein-like |
cd06339 |
periplasmic binding component of lipoprotein LppC, an immunodominant antigen; This subgroup ... |
22-290 |
1.40e-13 |
|
periplasmic binding component of lipoprotein LppC, an immunodominant antigen; This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Pssm-ID: 380562 [Multi-domain] Cd Length: 331 Bit Score: 70.76 E-value: 1.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 22 TIALAGPETGPVTQYGT-IQKiGAEAAIDflnangGFNGKKLVVKSYDDAcEPKQAVTVANQIVNDGVKFVIGHLCSSST 100
Cdd:cd06339 1 RIALLLPLSGPYAAAGQaIRD-GIELALF------DAGGSRPELRVYDTG-GPEGAAAAYQQAVAEGADLIIGPLLKSSV 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 101 MPAAEIYDENGIVMIT-----AASTSPELSQKGYStilrtIGTDLQSApvsAAYIADVIKpKHIALLHDKQAYGQGLVDA 175
Cdd:cd06339 73 AALAAAAQALGVPVLAlnndeSATAGPGLFQFGLS-----PEDEARQA---ARYAVQQGL-RRFAVLAPDNAYGQRVANA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 176 VAADLKARGIEPVIVEGVNKGQSDFSALITKLKNAN----------------------VDFVYWGGFHPEAGAILRQGAD 233
Cdd:cd06339 144 FREAWQALGGTVVAVESYDPDETDFSAAIRRLLGVDqsearirqlgellefeprrrqdFDAIFLPAGPEQARLIAPQLAF 223
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1489639363 234 QGFKPV-FMGADGVDNADLFAIAGSAAEGVLATVpMDFSAAPENAAIVEAIKAKKQDP 290
Cdd:cd06339 224 YGAGDVpLLGTSLWYSGKLNLLRDPDLNGAWFAD-PPWLLSPRAFPLRYRLAYGWPPP 280
|
|
| PBP1_Nba-like |
cd06359 |
type 1 periplasmic binding component of active transport systems predicted to be involved in ... |
23-342 |
6.06e-13 |
|
type 1 periplasmic binding component of active transport systems predicted to be involved in 2-nitrobenzoic acid degradation pathway; This group includes the type 1 periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Pssm-ID: 380582 [Multi-domain] Cd Length: 333 Bit Score: 68.82 E-value: 6.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 23 IALAGPETGPVTQYGTIQKIGAEAAIDflNANGGFNGKKLVVKSYDDACEPKQAVTVANQIVN-DGVKFVIGHLCSSSTM 101
Cdd:cd06359 2 IGFITTLSGPAAVLGQDMRDGFNLALE--QLGGKLGGLPVEVVVEDDQLKPDVAKQAAERLIErDKVDFVTGIIFSNVML 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 102 PAAEIYDENGIVMITAASTSPELSQKGYS-----------TILRTIGTDLQSAPVSAAYIadvikpkhiaLLHDKQAyGQ 170
Cdd:cd06359 80 AVVKPVVDSKVFYISANAGPSDLAGKGCNpnffvtswqndQLHEAAGKYANDKGYKRVYL----------LAPNYQA-GK 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 171 GLVDAVAADLKARgiepvIVEGVNK--GQSDFSALITKLKNANVDFVYwgGFHPEAGAI--LRQGADQGFK---PVFmGA 243
Cdd:cd06359 149 DALAGFKRTYKGE-----VVGEIYTplGQLDFSAELAQIRAAKPDAVF--AFYPGGMGVnfVKQYAQAGLKkkiPLY-TV 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 244 DGVDNADLFAIAGSAAEGVLATvpmDFSAA----PENAAIVEAIKAKKQDPNGPFVMPSYAAVQVLGEAAKRAGSD--DP 317
Cdd:cd06359 221 GTLDDEDLLPAMGDAALGVLSV---SQWSPdldnPENKRFVAAFRKKYGRPPSNYAAQGYDAALLIDAAVKAVGGDlsDK 297
|
330 340
....*....|....*....|....*
gi 1489639363 318 ETIAKTLREGEYDTAIGKISFEKNG 342
Cdd:cd06359 298 DALRAALRKADFKSVRGAFRFNNNQ 322
|
|
| PBP1_GPCR_family_C-like |
cd06350 |
ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory ... |
81-267 |
9.49e-12 |
|
ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate; categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (m; Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extracellular region is further divided into the ligand-binding domain (LBD) and the cysteine-rich domain. The LBD has sequence similarity to the LIVBP, which is a bacterial periplasmic protein (PBP), as well as to the extracellular region of both iGluR and the gamma-aminobutyric acid (GABA)b receptor. iGluRs are divided into three main subtypes based on pharmacological profile: NMDA, AMPA, and kainate receptors. All family C GPCRs have a large extracellular N terminus that contain a domain with homology to bacterial periplasmic amino acid-binding proteins.
Pssm-ID: 380573 Cd Length: 350 Bit Score: 65.39 E-value: 9.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 81 NQIVNDGVKFVIGHLCSSSTMPAAEIYDENGIVMITAASTSPELSQKG-YSTILRTIGTDLQSApvSAayIADVIKP--- 156
Cdd:cd06350 88 QNIGPPNIVAVIGAASSSVSIAVANLLGLFKIPQISYASTSPELSDKIrYPYFLRTVPSDTLQA--KA--IADLLKHfnw 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 157 KHIALLHDKQAYGQGLVDAVAADLKARGI--EPVIVEGVNKGQSDFSALITKLK---NANVdFVYWGGFHpEAGAILRQG 231
Cdd:cd06350 164 NYVSTVYSDDDYGRSGIEAFEREAKERGIciAQTIVIPENSTEDEIKRIIDKLKsspNAKV-VVLFLTES-DARELLKEA 241
|
170 180 190
....*....|....*....|....*....|....*...
gi 1489639363 232 ADQGFKP-VFMGADG-VDNADLFAIAGSAAEGVLATVP 267
Cdd:cd06350 242 KRRNLTGfTWIGSDGwGDSLVILEGYEDVLGGAIGVVP 279
|
|
| PBP1_FmdD-like |
cd06355 |
periplasmic component (FmdD) of an active transport system for short-chain amides and urea ... |
44-339 |
3.86e-10 |
|
periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF); This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type 1 periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Pssm-ID: 380578 [Multi-domain] Cd Length: 347 Bit Score: 60.67 E-value: 3.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 44 AEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQ-IVNDGVKFVIGHLCSSS---TMPAAEiyDENGIVMITAAS 119
Cdd:cd06355 23 TLLAIDEINAAGGLLGRKIEPVIEDGASDWPTFAEKAEKlITQDKVAVIFGCWTSASrkaVLPVIE--KYNGLLFYPVQY 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 120 TSPELSQKgystILRTIGTDLQSAPVSAAYIADVIKPKhIALLHDKQAYGQGLVDAVAADLKARGIEPVIVEGVNKGQSD 199
Cdd:cd06355 101 EGLEQSPN----IVYTGATPNQQILPAIDWLLENLGKR-FFLVGSDYVFPRTANKIIRDQLKALGGEVVGEEYVPLGGTD 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 200 FSALITKLKNANVDFVY--WGGFHPEAgaILRQGADQGFK----PVFmgADGVDNADLFAIAGSAAEGVLATVP----MD 269
Cdd:cd06355 176 FDAIVAKIKAFKPDVIVntLNGDSNIA--FFKQLAAAGITasdlPVL--SFSVSEAELRAIGPEELAGHYAAWNyfqsLD 251
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1489639363 270 fsaAPENAAIVEAIKAKKQDPNG---PFVmPSYAAVQVLGEAAKRAGSDDPETIAKTLREGEYDTAIGKISFE 339
Cdd:cd06355 252 ---TPENQAFVEAFKAKYGADRVtsdPME-AAYLGVYLWAQAVEKAGSFDPDAVRAALKGQSFEAPGGTVTVD 320
|
|
| PBP1_RPA0985_benzoate-like |
cd20013 |
type 1 periplasmic binding-protein component of an ABC system (RPA0985), involved in the ... |
23-302 |
1.93e-09 |
|
type 1 periplasmic binding-protein component of an ABC system (RPA0985), involved in the active transport of lignin-derived benzoate derivative compounds, and its close homologs; This group includes RPA0985 from Rhodopseudomonas palustris and its close homologs in other bacteria. Rpa0985 is the periplasmic binding-protein component of an ABC system that is involved in the active transport of lignin-derived benzoate derivative compounds. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380666 [Multi-domain] Cd Length: 356 Bit Score: 58.42 E-value: 1.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 23 IALAGPETGPVTQYGTiqkiGAEAAID-FLNANGG-FNGKKLVVKSYDDA-CEPKQAVTVANQ-IVNDGVKFVIGHLCSS 98
Cdd:cd20013 2 VGVIGPFSGPFADYGK----QFDRGIDlYLKLHGDkVGGRKVEVIYRDDGgPNPAVAKRLAQElIVRDKVQILIGFGFTP 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 99 STMPAAEIYDENGIVMITAASTSPELSQKG-YstILRTIGTDLQSAPVSAAYIADVIKPKHIALLHDkqaYGQGlVDAVA 177
Cdd:cd20013 78 NALAVAPVATEAKTPTVIMNAATSSITRKSpY--FVRTSFTMWQVAYPMGKWAAKNGIKKAYTAVAD---YAPG-HDAET 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 178 A---DLKARGIEpvIVEGVNKGQS--DFSALITKLKNANVDFVYW---GGfhPEAGAILRQGADQGFKP----VFMGADG 245
Cdd:cd20013 152 AfkkAFEAAGGK--IVGSIRVPLAtpDFAPFMQRIKDAKPDAVFVfvpAG--APSIGFLKAYAERGLKEagikLLGTGDA 227
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 246 VDNADLFAIaGSAAEGVLATvpMDFSAA---PENAAIVEAIKAKkqdpNGPFVMPSYAAV 302
Cdd:cd20013 228 TDDDDLPAM-GDAALGLITA--GHYSAAldsPENKAFVAAYQKA----YGPDARPDFMAV 280
|
|
| PBP1_mGluR |
cd06362 |
ligand binding domain of metabotropic glutamate receptors (mGluR); Ligand binding domain of ... |
40-245 |
8.72e-09 |
|
ligand binding domain of metabotropic glutamate receptors (mGluR); Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Pssm-ID: 380585 [Multi-domain] Cd Length: 460 Bit Score: 56.92 E-value: 8.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 40 QKIGAEAAIDFLNANGGFNgkklvvKSYDDACEPKQAVTVANQIVNDGVKFVIGHLCSSSTMPAAEIYDENGIVMITAAS 119
Cdd:cd06362 66 DTTALEQALHFIRDSLLSQ------ESAGFCQCSDDPPNLDESFQFYDVVGVIGAESSSVSIQVANLLRLFKIPQISYAS 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 120 TSPELSQKG-YSTILRTIGTDLQSAPVsaayIADVIKP---KHIALLHDKQAYGQGLVDAVAADLKARGI---EPVIVeG 192
Cdd:cd06362 140 TSDELSDKErYPYFLRTVPSDSFQAKA----IVDILLHfnwTYVSVVYSEGSYGEEGYKAFKKLARKAGIciaESERI-S 214
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1489639363 193 VNKGQSDFSALITKL---KNANVDFVYWGGFHPEA--GAILRQGADQGFkpVFMGADG 245
Cdd:cd06362 215 QDSDEKDYDDVIQKLlqkKNARVVVLFADQEDIRGllRAAKRLGASGRF--IWLGSDG 270
|
|
| PBP1_SBP-like |
cd06327 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
46-355 |
1.07e-08 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in gram-negative, gram-positive bacteria, and archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380550 [Multi-domain] Cd Length: 336 Bit Score: 56.04 E-value: 1.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 46 AAIDFlnaNGGFNGKKLVVKSYDDACEPKQAVTVANQIV-NDGVKFVIGHLCSSSTMPAAEIYDENGIVMITAASTSPEL 124
Cdd:cd06327 27 AVEDF---GGKVLGRPIEVVSADHQNKPDVASAIAREWYdRDGVDAIVDVPNSAVALAVQKLAKEKKKIAIVTGAGSSDL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 125 SQKGYS--TILRTIGTDLQSAPVSAAYIADVIKPKHIalLHDKQAYGQGLVDAVAADLKARGIEPVIVEGVNKGQSDFSA 202
Cdd:cd06327 104 TGKACSpyGVHWAYDTYALARGTVKALVKQGGKSWFF--ITADYAFGHSLEADATAAVKAAGGKVVGSVRHPLGTTDFSS 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 203 LITKLKNANVDFVYWGGFHPEAGAILRQGADQGFKP--VFMGADGVDNADLFAIAGSAAEGVLATVPMDFSAAPENAAIV 280
Cdd:cd06327 182 FLLQAQASGADVIALANAGADLVNAVKQAREFGLTDggQKLAALLLFITDIHALGLDAAQGLYLTTAFYWDRDDATRAWA 261
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1489639363 281 EAIKAKKQDPNGPFVMPSYAAV-QVLgEAAKRAGSDDPETIAKTLREGEYDTAigkisFEKNGDLKDFHSVVYELH 355
Cdd:cd06327 262 KRFFARTGKMPTMLQAGVYSAVlHYL-KAVKAAGTDDADAVVAKMREMPVNDF-----FAKNGRIRADGRVVHDMY 331
|
|
| PBP1_NPR_GC-like |
cd06352 |
ligand-binding domain of membrane guanylyl-cyclase receptors; Ligand-binding domain of ... |
22-364 |
1.13e-08 |
|
ligand-binding domain of membrane guanylyl-cyclase receptors; Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type 1 periplasmic binding fold protein family.
Pssm-ID: 380575 [Multi-domain] Cd Length: 391 Bit Score: 56.21 E-value: 1.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 22 TIALAGPETGPVTQYGTiQKIGA--EAAIDFLNANG-GFNGKKLVVKSYDDACEPKQAVTVA-NQIVNDGVKFVIGHLCS 97
Cdd:cd06352 1 KVGVLAPSNSQSLPVGY-ARSAPaiDIAIERINSEGlLLPGFNFEFTYRDSCCDESEAVGAAaDLIYKRNVDVFIGPACS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 98 SSTMPA---AEIYDengIVMITAASTSPELSQKG-YSTILRTIGTdLQSAPVSAAYIADVIKPKHIALLHDK-----QAY 168
Cdd:cd06352 80 AAADAVgrlATYWN---IPIITWGAVSASFLDKSrYPTLTRTSPN-SLSLAEALLALLKQFNWKRAAIIYSDddskcFSI 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 169 GQGLVDAVAADlkaRGIEPVIVEGVNKGQ-SDFSALITKLK-NANV-------------------------DFVYwggFH 221
Cdd:cd06352 156 ANDLEDALNQE---DNLTISYYEFVEVNSdSDYSSILQEAKkRARIivlcfdsetvrqfmlaahdlgmtngEYVF---IF 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 222 PEagaILRQGADQGFKPVFMGADGVDnadlfAIAGSAAEGVLaTVPMDFSAAPENAAIVEAIKAKKQDPNG--------- 292
Cdd:cd06352 230 IE---LFKDGFGGNSTDGWERNDGRD-----EDAKQAYESLL-VISLSRPSNPEYDNFSKEVKARAKEPPFycydaseee 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 293 --PFVMPSYAAVQVLGEAAKRAGSDDP-----ETIAKTLREGEYDTAIGKISFEKNGD------LKDFHS------VVYE 353
Cdd:cd06352 301 vsPYAAALYDAVYLYALALNETLAEGGnyrngTAIAQRMWNRTFQGITGPVTIDSNGDrdpdyaLLDLDPstgkfvVVLT 380
|
410
....*....|.
gi 1489639363 354 LHADGKKVLKS 364
Cdd:cd06352 381 YDGTSNGLVVV 391
|
|
| PBP1_GABAb_receptor |
cd06366 |
ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for ... |
22-235 |
9.51e-08 |
|
ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA); Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb receptor or GABAbR). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha-i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Pssm-ID: 380589 [Multi-domain] Cd Length: 404 Bit Score: 53.40 E-value: 9.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 22 TIALAGPETGPVTQYGTIQKIGA-EAAIDFLNANGG-FNGKKLVVKSYDDACEPKQAVTVANQIVNDGVKFV--IGHLCS 97
Cdd:cd06366 1 YIGGLFPLSGSKGWWGGAGILPAaEMALEHINNRSDiLPGYNLELIWNDTQCDPGLGLKALYDLLYTPPPKVmlLGPGCS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 98 SSTMPAAEIYDENGIVMITAASTSPELS-QKGYSTILRTIGTDLQsapVSAAYIAdVIKP---KHIALLHDKQAYGQGLV 173
Cdd:cd06366 81 SVTEPVAEASKYWNLVQLSYAATSPALSdRKRYPYFFRTVPSDTA---FNPARIA-LLKHfgwKRVATIYQNDEVFSSTA 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1489639363 174 DAVAADLKARGIEPVIVEGVNkgQSDFSALITKLKNANVDFVYWGGFHPEAGAILRQGADQG 235
Cdd:cd06366 157 EDLEELLEEANITIVATESFS--SEDPTDQLENLKEKDARIIIGLFYEDAARKVFCEAYKLG 216
|
|
| PBP1_glutamate_receptors-like |
cd06269 |
ligand-binding domain of family C G-protein couples receptors (GPCRs), membrane bound guanylyl ... |
45-208 |
5.15e-07 |
|
ligand-binding domain of family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as natriuretic peptide receptors (NPRs), and N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of ionotropic glutamate rece; This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type 1 family. The family C GPCRs consists of metabotropic glutamate receptor (mGluR), a calcium-sensing receptor (CaSR), gamma-aminobutyric acid receptor (GABAbR), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing variants of the orphan receptors are not included in this CD. The family C GPCRs are activated by endogenous agonists such as amino acids, ions, and sugar based molecules. Their amino terminal ligand-binding region is homologous to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). The ionotropic glutamate receptors (iGluRs) have an integral ion channel and are subdivided into three major groups based on their pharmacology and structural similarities: NMDA receptors, AMPA receptors, and kainate receptors. The family of membrane bound guanylyl cyclases is further divided into three subfamilies: the ANP receptor (GC-A)/C-type natriuretic peptide receptor (GC-B), the heat-stable enterotoxin receptor (GC-C)/sensory organ specific membrane GCs such as retinal receptors (GC-E, GC-F), and olfactory receptors (GC-D and GC-G).
Pssm-ID: 380493 [Multi-domain] Cd Length: 332 Bit Score: 50.88 E-value: 5.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 45 EAAIDFLNANG-GFNGKKLVVKSYDDACEPKQAVTVA-NQIVNDGVKFVIGHLCSSSTMPAAEIYDENGIVMITAASTSP 122
Cdd:cd06269 23 ELALSDVNSRPdLLPKTTLGLAIRDSECNPTQALLSAcDLLAAAKVVAILGPGCSASAAPVANLARHWDIPVLSYGATAP 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 123 ELSQK-GYSTILRTIGTDLQSAPVsaayIADVIKP---KHIALLHDKQAYGQGLVDAVAADLKARGIEPVIVEGVNKGQS 198
Cdd:cd06269 103 GLSDKsRYAYFLRTVPPDSKQADA----MLALVRRlgwNKVVLIYSDDEYGEFGLEGLEELFQEKGGLITSRQSFDENKD 178
|
170
....*....|.
gi 1489639363 199 -DFSALITKLK 208
Cdd:cd06269 179 dDLTKLLRNLR 189
|
|
| PBP1_GABAb_receptor_plant |
cd19990 |
periplasmic ligand-binding domain of Arabidopsis thaliana glutamate receptors and its close ... |
37-186 |
2.86e-04 |
|
periplasmic ligand-binding domain of Arabidopsis thaliana glutamate receptors and its close homologs in other plants; This group includes the ligand-binding domain of Arabidopsis thaliana glutamate receptors, which have sequence similarity with animal ionotropic glutamate receptor and its close homologs in other plants. The ligand-binding domain of GABAb receptors are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb receptor or GABAbR). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha-i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Pssm-ID: 380645 [Multi-domain] Cd Length: 373 Bit Score: 42.60 E-value: 2.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 37 GTIQKIGAEAAIDFLNANGGFNGKKLVVKSYDDACEPKQAVTVANQ-IVNDGVKFVIGHLCSSSTMPAAEIYDENGIVMI 115
Cdd:cd19990 13 GKEAKVAIEMAVSDFNSDSSSYGTKLVLHVRDSKGDPLQAASAALDlIKNKKVEAIIGPQTSEEASFVAELGNKAQVPII 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1489639363 116 TAASTSPELSQKGYSTILRTiGTDlQSAPVSAayIADVIKP---KHIALLHDKQAYGQGLVDAVAADLKARGIE 186
Cdd:cd19990 93 SFSATSPTLSSLRWPFFIRM-THN-DSSQMKA--IAAIVQSygwRRVVLIYEDDDYGSGIIPYLSDALQEVGSR 162
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|
| PRK02271 |
PRK02271 |
methylenetetrahydromethanopterin reductase; Provisional |
224-337 |
2.49e-03 |
|
methylenetetrahydromethanopterin reductase; Provisional
Pssm-ID: 235022 [Multi-domain] Cd Length: 325 Bit Score: 39.54 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 224 AGAILRQGADQGFKPVFMGADGvdnADLFAIAGSAAEGVL--ATVPMDFSAAPEnaaIVEAIKAKKQDPNGPFVMPSYAA 301
Cdd:PRK02271 139 AGAKLNVKPVQGEIPIYMGAQG---PKMLELAGEIADGVLinASNPKDFEWAVP---LIKKGAEEAGKSRGEFDVAAYAS 212
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489639363 302 VQVLGEAAKR------------AGSDDP------------ETIAKTLREGEYDTAIGKIS 337
Cdd:PRK02271 213 VSVDKDEDKAreaakpvvafiaAGSPPPvlerhgidleavEKIGEALSKGDFGEAFGAVT 272
|
|
| |
