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Conserved domains on  [gi|1490642859|gb|RLC35733|]
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hypothetical protein DRH14_00095 [Candidatus Shapirobacteria bacterium]

Protein Classification

pilin( domain architecture ID 16070754)

pilin similar to Mycoplasma agalactiae integrative conjugative element CDS15; likely type IV secretion system pilin

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
T4SS_pilin pfam18895
Type IV secretion system pilin; This entry represents likely Type IV secretion system pilins.
 46-105 8.99e-05

Type IV secretion system pilin; This entry represents likely Type IV secretion system pilins.


:

Pssm-ID: 436814  Cd Length: 71  Bit Score: 38.00  E-value: 8.99e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490642859  46 ISLIMLIVALVFFFMLVWGGLRWVMSqGDKTNVENARNQITNALIGLAIVFAAWAIMKLI 105
Cdd:pfam18895  13 FNWISGIGGALAVVVLVIGGIKYLLS-GDPEERAEAKKAIKWAIIGLVVVFAAPLIVGVI 71
 
Name Accession Description Interval E-value
T4SS_pilin pfam18895
Type IV secretion system pilin; This entry represents likely Type IV secretion system pilins.
 46-105 8.99e-05

Type IV secretion system pilin; This entry represents likely Type IV secretion system pilins.


Pssm-ID: 436814  Cd Length: 71  Bit Score: 38.00  E-value: 8.99e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490642859  46 ISLIMLIVALVFFFMLVWGGLRWVMSqGDKTNVENARNQITNALIGLAIVFAAWAIMKLI 105
Cdd:pfam18895  13 FNWISGIGGALAVVVLVIGGIKYLLS-GDPEERAEAKKAIKWAIIGLVVVFAAPLIVGVI 71
 
Name Accession Description Interval E-value
T4SS_pilin pfam18895
Type IV secretion system pilin; This entry represents likely Type IV secretion system pilins.
 46-105 8.99e-05

Type IV secretion system pilin; This entry represents likely Type IV secretion system pilins.


Pssm-ID: 436814  Cd Length: 71  Bit Score: 38.00  E-value: 8.99e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490642859  46 ISLIMLIVALVFFFMLVWGGLRWVMSqGDKTNVENARNQITNALIGLAIVFAAWAIMKLI 105
Cdd:pfam18895  13 FNWISGIGGALAVVVLVIGGIKYLLS-GDPEERAEAKKAIKWAIIGLVVVFAAPLIVGVI 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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