NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1495805771|gb|RLY80194|]
View 

accessory Sec system glycosylation chaperone GtfB [Staphylococcus epidermidis]

Protein Classification

glycosyltransferase family protein; glycosyltransferase family 4 protein( domain architecture ID 10798684)

glycosyltransferase family protein may synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein| glycosyltransferase family 4 (GT4) protein catalyzes the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TIGR02919 TIGR02919
accessory Sec system glycosyltransferase GtfB; Members of this protein family are found only ...
 1-440 0e+00

accessory Sec system glycosyltransferase GtfB; Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. [Protein fate, Protein modification and repair]


:

Pssm-ID: 274351  Cd Length: 438  Bit Score: 695.22  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1495805771   1 MINLFENYNQETQELHQSLKRAGYNHFTIVINDDGFLPDDVTSPYRFFAAYQIYEDdTPAFFNDIDTPPFWEIKGDATMA 80
Cdd:TIGR02919   1 MINLFDNFDQESIDLYRSLKFAGLKNPTIVINDDGFLPDDVLSPYRFFTGYEDTNG-KPLYFNEVPVPDFWEIKGNNNSA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1495805771  81 TITDMGELRGEIFYKEHYKTRVVSHVEWLDSKQRLRSVDYYTKEGFKFAETVYDLLGNAILKKYMTREGKEVIYENYVTN 160
Cdd:TIGR02919  80 EIYDLGEKRGKIFYKENYKTRIVKEVEWLDKNGRLRYVDHYNKFGFCFAQTVYDANGKAILKRYFDKDGKEVIVENFVTG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1495805771 161 DVVVEYKGKSYFFDSYTEWIKFYLSEMGIEIKEVIFNTLSTPFLAIYHLPTLKKGILFWQEQSQGYVPGNMKVMLSPNlQ 240
Cdd:TIGR02919 160 DIILNWENKSYFFASKVEFVTFYLSQLEINLSHIFINSLSTPFLVSYGLPEDGSDVLFWQEPITDDIPGNMKLLLDNE-T 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1495805771 241 SRFAVIVPNQNEYKLIKEQLSREEQQAVYASGYLYDTYKRNHYSKNVLTLTNSDQLPHVETLIRLHKDYQFHIGAKTEMS 320
Cdd:TIGR02919 239 RNKKIIIPNKNEYEKIKELLDNEYQEQISQLGYLYPFKKDNKYRKQALILTNSDQIEHLEEIVQALPDYHFHIAALTEMS 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1495805771 321 SKLLSLSQYENVKLYPIIKEQTVQTLYQQCDIYLDINEGNEIGNAVRSAYNHQLLIMGYKEVVHNRDFVAIENQFLVNDI 400
Cdd:TIGR02919 319 SKLMSLDKYDNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNRDFIASENIFEHNEV 398

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|
gi 1495805771 401 SQLSNALKEIGNHRGQFETRLALQQRHANAVPVSTFKYVL 440
Cdd:TIGR02919 399 DQLISKLKDLLNDPNQFRELLEQQREHANDISKEQFKEVL 438
 
Name Accession Description Interval E-value
TIGR02919 TIGR02919
accessory Sec system glycosyltransferase GtfB; Members of this protein family are found only ...
 1-440 0e+00

accessory Sec system glycosyltransferase GtfB; Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. [Protein fate, Protein modification and repair]


Pssm-ID: 274351  Cd Length: 438  Bit Score: 695.22  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1495805771   1 MINLFENYNQETQELHQSLKRAGYNHFTIVINDDGFLPDDVTSPYRFFAAYQIYEDdTPAFFNDIDTPPFWEIKGDATMA 80
Cdd:TIGR02919   1 MINLFDNFDQESIDLYRSLKFAGLKNPTIVINDDGFLPDDVLSPYRFFTGYEDTNG-KPLYFNEVPVPDFWEIKGNNNSA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1495805771  81 TITDMGELRGEIFYKEHYKTRVVSHVEWLDSKQRLRSVDYYTKEGFKFAETVYDLLGNAILKKYMTREGKEVIYENYVTN 160
Cdd:TIGR02919  80 EIYDLGEKRGKIFYKENYKTRIVKEVEWLDKNGRLRYVDHYNKFGFCFAQTVYDANGKAILKRYFDKDGKEVIVENFVTG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1495805771 161 DVVVEYKGKSYFFDSYTEWIKFYLSEMGIEIKEVIFNTLSTPFLAIYHLPTLKKGILFWQEQSQGYVPGNMKVMLSPNlQ 240
Cdd:TIGR02919 160 DIILNWENKSYFFASKVEFVTFYLSQLEINLSHIFINSLSTPFLVSYGLPEDGSDVLFWQEPITDDIPGNMKLLLDNE-T 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1495805771 241 SRFAVIVPNQNEYKLIKEQLSREEQQAVYASGYLYDTYKRNHYSKNVLTLTNSDQLPHVETLIRLHKDYQFHIGAKTEMS 320
Cdd:TIGR02919 239 RNKKIIIPNKNEYEKIKELLDNEYQEQISQLGYLYPFKKDNKYRKQALILTNSDQIEHLEEIVQALPDYHFHIAALTEMS 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1495805771 321 SKLLSLSQYENVKLYPIIKEQTVQTLYQQCDIYLDINEGNEIGNAVRSAYNHQLLIMGYKEVVHNRDFVAIENQFLVNDI 400
Cdd:TIGR02919 319 SKLMSLDKYDNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNRDFIASENIFEHNEV 398

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|
gi 1495805771 401 SQLSNALKEIGNHRGQFETRLALQQRHANAVPVSTFKYVL 440
Cdd:TIGR02919 399 DQLISKLKDLLNDPNQFRELLEQQREHANDISKEQFKEVL 438
 
Name Accession Description Interval E-value
TIGR02919 TIGR02919
accessory Sec system glycosyltransferase GtfB; Members of this protein family are found only ...
 1-440 0e+00

accessory Sec system glycosyltransferase GtfB; Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. [Protein fate, Protein modification and repair]


Pssm-ID: 274351  Cd Length: 438  Bit Score: 695.22  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1495805771   1 MINLFENYNQETQELHQSLKRAGYNHFTIVINDDGFLPDDVTSPYRFFAAYQIYEDdTPAFFNDIDTPPFWEIKGDATMA 80
Cdd:TIGR02919   1 MINLFDNFDQESIDLYRSLKFAGLKNPTIVINDDGFLPDDVLSPYRFFTGYEDTNG-KPLYFNEVPVPDFWEIKGNNNSA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1495805771  81 TITDMGELRGEIFYKEHYKTRVVSHVEWLDSKQRLRSVDYYTKEGFKFAETVYDLLGNAILKKYMTREGKEVIYENYVTN 160
Cdd:TIGR02919  80 EIYDLGEKRGKIFYKENYKTRIVKEVEWLDKNGRLRYVDHYNKFGFCFAQTVYDANGKAILKRYFDKDGKEVIVENFVTG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1495805771 161 DVVVEYKGKSYFFDSYTEWIKFYLSEMGIEIKEVIFNTLSTPFLAIYHLPTLKKGILFWQEQSQGYVPGNMKVMLSPNlQ 240
Cdd:TIGR02919 160 DIILNWENKSYFFASKVEFVTFYLSQLEINLSHIFINSLSTPFLVSYGLPEDGSDVLFWQEPITDDIPGNMKLLLDNE-T 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1495805771 241 SRFAVIVPNQNEYKLIKEQLSREEQQAVYASGYLYDTYKRNHYSKNVLTLTNSDQLPHVETLIRLHKDYQFHIGAKTEMS 320
Cdd:TIGR02919 239 RNKKIIIPNKNEYEKIKELLDNEYQEQISQLGYLYPFKKDNKYRKQALILTNSDQIEHLEEIVQALPDYHFHIAALTEMS 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1495805771 321 SKLLSLSQYENVKLYPIIKEQTVQTLYQQCDIYLDINEGNEIGNAVRSAYNHQLLIMGYKEVVHNRDFVAIENQFLVNDI 400
Cdd:TIGR02919 319 SKLMSLDKYDNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNRDFIASENIFEHNEV 398

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|
gi 1495805771 401 SQLSNALKEIGNHRGQFETRLALQQRHANAVPVSTFKYVL 440
Cdd:TIGR02919 399 DQLISKLKDLLNDPNQFRELLEQQREHANDISKEQFKEVL 438
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH