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Conserved domains on  [gi|1499472791|gb|RMR26065|]
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Peptide ABC transporter permease [Pseudomonas amygdali pv. ulmi]

Protein Classification

ABC transporter permease( domain architecture ID 11427312)

ABC transporter permease similar to ABC oligopeptide transporter permease proteins (OppB, AppB, and AmiC), the transmembrane subunits (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs

Gene Ontology:  GO:0055085
PubMed:  18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 7-312 2.19e-129

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


:

Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 370.94  E-value: 2.19e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791   7 RFILQRPLQLLPVLFGISLVTFILVRSIPGDPARILLGARSTPQALANIRAQYGLDEPLWTQYVYFMKNLLQGDMGKSLL 86
Cdd:COG0601     3 RYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTSFV 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791  87 YKIDVLKLIVTRLEPTVFLVCGSVLLALLIAVPLATVAARNKGSWGDNLIRVFTTTGLGMPAFWLGIMLILLFSVQLGWF 166
Cdd:COG0601    83 YGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLGWL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 167 PVSGYGSDW---LDKAHHMVLPCLTIALALSAVLIRNLRASMLMELQADHVTAARARGVSEGAVFRRHVLPNSLVPSINL 243
Cdd:COG0601   163 PVSGRVSPWedfLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTV 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1499472791 244 LAVNIGWLISGTVVIESLFAIPGIGQLLVRGIFSRDYMVVQGVAMVLACATVIVNFLADVATVAIDPRV 312
Cdd:COG0601   243 LGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRI 311
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 7-312 2.19e-129

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 370.94  E-value: 2.19e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791   7 RFILQRPLQLLPVLFGISLVTFILVRSIPGDPARILLGARSTPQALANIRAQYGLDEPLWTQYVYFMKNLLQGDMGKSLL 86
Cdd:COG0601     3 RYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTSFV 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791  87 YKIDVLKLIVTRLEPTVFLVCGSVLLALLIAVPLATVAARNKGSWGDNLIRVFTTTGLGMPAFWLGIMLILLFSVQLGWF 166
Cdd:COG0601    83 YGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLGWL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 167 PVSGYGSDW---LDKAHHMVLPCLTIALALSAVLIRNLRASMLMELQADHVTAARARGVSEGAVFRRHVLPNSLVPSINL 243
Cdd:COG0601   163 PVSGRVSPWedfLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTV 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1499472791 244 LAVNIGWLISGTVVIESLFAIPGIGQLLVRGIFSRDYMVVQGVAMVLACATVIVNFLADVATVAIDPRV 312
Cdd:COG0601   243 LGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRI 311
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 7-312 1.51e-79

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 244.28  E-value: 1.51e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791   7 RFILQRPLQLLPVLFGISLVTFILVRSIPGDPARILLGARS---TPQALANIRAQYGLDEPLWTQYVYFMKNLLQGDMGK 83
Cdd:TIGR02789   3 NYILRRLLLLIPVVLAASLLAFILIHLGPSDPAEDYLRLSHippTDEAIADMRHSLGLDQPLYVQYFHWLWNALHLDFGI 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791  84 SLLYKIDVLKLIVTRLEPTVFLVCGSVLLALLIAVPLATVAARNKGSWGDNLIRVFTTTGLGMPAFWLGIMLILLFSVQL 163
Cdd:TIGR02789  83 SYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFSVYL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 164 GWFPVSGYGSdwldkAHHMVLPCLTIALALSAVLIRNLRASMLMELQADHVTAARARGVSEGAVFRRHVLPNSLVPSINL 243
Cdd:TIGR02789 163 NLLPTNGAGT-----WQHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITA 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1499472791 244 LAVNIGWLISGTVVIESLFAIPGIGQLLVRGIFSRDYMVVQGVAMVLACATVIVNFLADVATVAIDPRV 312
Cdd:TIGR02789 238 LGMHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRI 306
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
 7-312 5.35e-73

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 227.66  E-value: 5.35e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791   7 RFILQRPLQLLPVLFGISLVTFILVRSIPGDPARILLGARS---TPQALANIRAQYGLDEPLWTQYVYFMKNLLQGDMGK 83
Cdd:PRK10352    3 RYILRRLLLLIPMLLAASVIIFLMLRLGTGDPALDYLRLSNlppTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDFGI 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791  84 SLLYKIDVLKLIVTRLEPTVFLVCGSVLLALLIAVPLATVAARNKGSWGDNLIRVFTTTGLGMPAFWLGIMLILLFSVQL 163
Cdd:PRK10352   83 SFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 164 GWFPVSGYGSdwldkAHHMVLPCLTIALALSAVLIRNLRASMLMELQADHVTAARARGVSEGAVFRRHVLPNSLVPSINL 243
Cdd:PRK10352  163 QWLPAMGYGG-----WQHIILPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHILRNASLPMITA 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1499472791 244 LAVNIGWLISGTVVIESLFAIPGIGQLLVRGIFSRDYMVVQGVAMVLACATVIVNFLADVATVAIDPRV 312
Cdd:PRK10352  238 VGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRI 306
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 117-312 2.02e-29

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 110.85  E-value: 2.02e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 117 AVPLATVAARNKGSWGDNLIRVFTTTGLGMPAFWLGIMLILLFsvqlgwfpvsgygsdWLDKAHHMVLPCLTIALALSAV 196
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA---------------ILSILGHGILPAIILALLGWAG 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 197 LIRNLRASMLMELQADHVTAARARGVSEGAVFRRHVLPNSLVPSINLLAVNIGWLISGTVVIESLFAIPGIGQLLVRGIF 276
Cdd:pfam00528  66 YARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAIL 145

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1499472791 277 SRDYMVVQGVAMVLACATVIVNFLADVATVAIDPRV 312
Cdd:pfam00528 146 GYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRV 181
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 102-299 2.63e-19

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 83.87  E-value: 2.63e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 102 TVFLVCGSVLLALLIAVPLATVAARnKGSWGDNLIRVFTTTGLGMPAFWLGIMLILLFSVQLGWFPVSGYGsdwldkahh 181
Cdd:cd06261     4 TLLLALIATLLALVLGLLLGIILAR-KRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLG--------- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 182 mvLPCLTIALALSAVLIRNLRASMLMELQADHVTAARARGVSEGAVFRRHVLPNSLVPSINLLAVNIGWLISGTVVIESL 261
Cdd:cd06261    74 --LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFL 151

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1499472791 262 FA-IPGIGQLLVRGIFSRDYMVVQGVAMVLACATVIVNF 299
Cdd:cd06261   152 GGgEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 7-312 2.19e-129

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 370.94  E-value: 2.19e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791   7 RFILQRPLQLLPVLFGISLVTFILVRSIPGDPARILLGARSTPQALANIRAQYGLDEPLWTQYVYFMKNLLQGDMGKSLL 86
Cdd:COG0601     3 RYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTSFV 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791  87 YKIDVLKLIVTRLEPTVFLVCGSVLLALLIAVPLATVAARNKGSWGDNLIRVFTTTGLGMPAFWLGIMLILLFSVQLGWF 166
Cdd:COG0601    83 YGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLGWL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 167 PVSGYGSDW---LDKAHHMVLPCLTIALALSAVLIRNLRASMLMELQADHVTAARARGVSEGAVFRRHVLPNSLVPSINL 243
Cdd:COG0601   163 PVSGRVSPWedfLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTV 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1499472791 244 LAVNIGWLISGTVVIESLFAIPGIGQLLVRGIFSRDYMVVQGVAMVLACATVIVNFLADVATVAIDPRV 312
Cdd:COG0601   243 LGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRI 311
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 7-312 1.51e-79

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 244.28  E-value: 1.51e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791   7 RFILQRPLQLLPVLFGISLVTFILVRSIPGDPARILLGARS---TPQALANIRAQYGLDEPLWTQYVYFMKNLLQGDMGK 83
Cdd:TIGR02789   3 NYILRRLLLLIPVVLAASLLAFILIHLGPSDPAEDYLRLSHippTDEAIADMRHSLGLDQPLYVQYFHWLWNALHLDFGI 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791  84 SLLYKIDVLKLIVTRLEPTVFLVCGSVLLALLIAVPLATVAARNKGSWGDNLIRVFTTTGLGMPAFWLGIMLILLFSVQL 163
Cdd:TIGR02789  83 SYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFSVYL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 164 GWFPVSGYGSdwldkAHHMVLPCLTIALALSAVLIRNLRASMLMELQADHVTAARARGVSEGAVFRRHVLPNSLVPSINL 243
Cdd:TIGR02789 163 NLLPTNGAGT-----WQHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITA 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1499472791 244 LAVNIGWLISGTVVIESLFAIPGIGQLLVRGIFSRDYMVVQGVAMVLACATVIVNFLADVATVAIDPRV 312
Cdd:TIGR02789 238 LGMHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRI 306
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
 7-312 5.35e-73

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 227.66  E-value: 5.35e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791   7 RFILQRPLQLLPVLFGISLVTFILVRSIPGDPARILLGARS---TPQALANIRAQYGLDEPLWTQYVYFMKNLLQGDMGK 83
Cdd:PRK10352    3 RYILRRLLLLIPMLLAASVIIFLMLRLGTGDPALDYLRLSNlppTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDFGI 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791  84 SLLYKIDVLKLIVTRLEPTVFLVCGSVLLALLIAVPLATVAARNKGSWGDNLIRVFTTTGLGMPAFWLGIMLILLFSVQL 163
Cdd:PRK10352   83 SFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 164 GWFPVSGYGSdwldkAHHMVLPCLTIALALSAVLIRNLRASMLMELQADHVTAARARGVSEGAVFRRHVLPNSLVPSINL 243
Cdd:PRK10352  163 QWLPAMGYGG-----WQHIILPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHILRNASLPMITA 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1499472791 244 LAVNIGWLISGTVVIESLFAIPGIGQLLVRGIFSRDYMVVQGVAMVLACATVIVNFLADVATVAIDPRV 312
Cdd:PRK10352  238 VGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRI 306
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 8-315 1.32e-65

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 208.41  E-value: 1.32e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791   8 FILQRPLQLLPVLFGISLVTFILVRSIPGDPARILLGARSTPQALANIRAQYGLDEPLWTQYVYFMKNLLQGDMGKSLLY 87
Cdd:PRK15081    4 YVIKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLAAGPEADAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGTSMVS 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791  88 KIDVLKLIVTRLEPTVFLVCGSVLLALLIAVPLATVAARNKGSWGDNLIRVFTTTGLGMPAFWLGIMLILLFSVQLGWFP 167
Cdd:PRK15081   84 RRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVELGWLP 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 168 VSGYGSdWLdkahHMVLPCLTIALALSAVLIRNLRASMLMELQADHVTAARARGVSEGAVFRRHVLPNSLVPSINLLAVN 247
Cdd:PRK15081  164 TVGADS-WQ----HYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQ 238

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1499472791 248 IGWLISGTVVIESLFAIPGIGQLLVRGIFSRDYMVVQGVAMVLACATVIVNFLADVATVAIDPRVNIK 315
Cdd:PRK15081  239 FGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIRYK 306
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
7-315 8.68e-61

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 196.96  E-value: 8.68e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791   7 RFILQRPLQLLPVLFGISLVTFILVRSIPGDPARILLGARS-TPQALANIRAQYGLDEPLWTQYVYFMKNLLQGDMGKSL 85
Cdd:PRK10914    3 QFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGiSPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791  86 LYKIDVLKLIVTRLEPTVFLVCGSVLLALLIAVPLATVAARNKGSWGDNLIRVFTTTGLGMPAFWLGIMLILLFSVQLGW 165
Cdd:PRK10914   83 KSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 166 FPVSGYGSD--------------------------WLDKAHHMVLPCLTIALALSAVLIRNLRASMLMELQADHVTAARA 219
Cdd:PRK10914  163 TPVSGRVSDmvflddsnpltgfmlidtaiwgedgnFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARA 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 220 RGVSEGAVFRRHVLPNSLVPSINLLAVNIGWLISGTVVIESLFAIPGIGQLLVRGIFSRDYMVVQGVAMVLACATVIVNF 299
Cdd:PRK10914  243 KGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNL 322

                         330
                  ....*....|....*.
gi 1499472791 300 LADVATVAIDPRVNIK 315
Cdd:PRK10914  323 LVDLLYGVVNPRIRHK 338
oppB PRK09471
oligopeptide ABC transporter permease OppB;
7-312 3.50e-58

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 189.12  E-value: 3.50e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791   7 RFILQRPLQLLPVLFGISLVTFILVRSIPGDPariLLGARS-TPQALANIRAQYGLDEPLWTQYVYFMKNLLQGDMGKSL 85
Cdd:PRK09471    3 KFILRRCLEAIPTLFILITISFFMMRLAPGSP---FTGERTlPPEVMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSF 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791  86 LYK-IDVLKLIVTRLEPTVFLVCGSVLLALLIAVPLATVAARNKGSWGDNLIRVFTTTGLGMPAFWLGIMLILLFSVQLG 164
Cdd:PRK09471   80 KYKdYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAITLH 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 165 WFPVSGygsdWLDKA-HHMVLPCLTIALALSAVLIRNLRASMLMELQADHVTAARARGVSEGAVFRRHVLPNSLVPSINL 243
Cdd:PRK09471  160 WLPGGG----WNGGAlKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSY 235

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1499472791 244 LAVNIGWLISGTVVIESLFAIPGIGQLLVRGIFSRDYMVVQGVAMVLACATVIVNFLADVATVAIDPRV 312
Cdd:PRK09471  236 MGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKI 304
SapB COG4168
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];
8-310 9.81e-57

ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];


Pssm-ID: 443329 [Multi-domain]  Cd Length: 321  Bit Score: 185.81  E-value: 9.81e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791   8 FILQRPLQLLPVLFGISLVTFILVRSIPGDPARillgarstpqalaniraqyglDEPLWTQYVYFMKNLLQGDMGKSLLY 87
Cdd:COG4168     4 YLLRRLNLLLITLLILSLISFSLLYRDPLNPLS---------------------DASLFSGYLFYLQNLLQGDFGISSIN 62

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791  88 KIDVLKLIVTRLEPTVFLVCGSVLLALLIAVPLATVAARNKGSWGDNLIRVFTTTGLGMPAFWLGIMLILLFSVQLGWFP 167
Cdd:COG4168    63 GEPILEQLLTVFPATLELCFLAFLLALLIGIPLGILAGIYRGKWLDKLISSLSLLGFSIPVFWLALLLILFFSLNLGWLP 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 168 VSG-----Y----------------GSDWLDKA-----HHMVLPCLTIALALSAVLIRNLRASMLMELQADHVTAARARG 221
Cdd:COG4168   143 VSGrynllYeippvtgfalidawlsDSPYRLKAiqsalQHLILPTLVLAVAPTTEVIRLTRQSTEEVMNQNYIKAAATRG 222

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 222 VSEGAVFRRHVLPNSLVPSINLLAVNIGWLISGTVVIESLFAIPGIGQLLVRGIFSRDYMVVQGVAMVLACATVIVNFLA 301
Cdd:COG4168   223 LSRFTIIRRHVLRNALPPIIPQLGLQFSTMLTLAMITEVVFSWPGIGRWLINAIRQQDYAAISAGVIVIGTFVIIVNILS 302


                  ....*....
gi 1499472791 302 DVATVAIDP 310
Cdd:COG4168   303 DILGALLNP 311
YejB COG4174
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ...
 8-313 2.52e-44

ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443333 [Multi-domain]  Cd Length: 363  Bit Score: 154.96  E-value: 2.52e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791   8 FILQRPLQLLPVLFGISLVTFILVRSIPGDP----------------ARILLGARST-------------------PQAL 52
Cdd:COG4174     4 YILRRLLLMIPTLLGIMLINFVIVQFAPGGPveqviaqlqgtgggatGRISGGGGDAgggaaagggskyrgargldPEFI 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791  53 ANIRAQYGLDEPLWTQYVYFMKNLLQGDMGKSLLYKIDVLKLIVTRLEPTVFLVCGSVLLALLIAVPLATVAARNKGSWG 132
Cdd:COG4174    84 AELEKQYGFDKPAHERFLLMLKNYLRFDFGESYFRDISVIDLILEKLPVSISLGLWSTLLTYLISIPLGIRKAVRDGSRF 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 133 DnlirVFTTT----GLGMPAFWLGIMLILLFS--VQLGWFPVSGYGSD-W---------LDKAHHMVLPclTIALALSA- 195
Cdd:COG4174   164 D----VWTSTviivGYAIPGFLFAILLIVLFAggSYFDWFPLRGLTSDnWdqlswwgkiLDYLWHLTLP--VTAMVIGGf 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 196 ----VLIRNlraSMLMELQADHVTAARARGVSEGAVFRRHVLPNSLVPSI-NLLAVNIGWLISGTVVIESLFAIPGIGQL 270
Cdd:COG4174   238 atltLLTKN---SFLDEIRKQYVLTARAKGLSERRVLYGHVFRNAMLIVIaGFPAAFIGAFFTGSLLIETIFSLDGLGLL 314

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 1499472791 271 LVRGIFSRDYMVVQGVAMVLACATVIVNFLADVATVAIDPRVN 313
Cdd:COG4174   315 GFEAVVNRDYPVVFGTLYIFTLIGLVLKLISDLTYVLVDPRID 357
PRK15110 PRK15110
peptide ABC transporter permease SapB;
8-310 3.94e-37

peptide ABC transporter permease SapB;


Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 134.82  E-value: 3.94e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791   8 FILQRPLQLLPVLFGISLVTFILVRSIPGDPariLLGArstpqalaniraqygldePLWTQYVYFMKNLLQGDMGKSLLY 87
Cdd:PRK15110    4 FTLRRLLLLIVTLFLLTLVGFSLSYFTPHAP---LQGA------------------SLWDAWVFWFNGLLHWDFGVSSIN 62

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791  88 KIDVLKLIVTRLEPTVFLVCGSVLLALLIAVPLATVAARNKGSWGDNLIRVFTTTGLGMPAFWLGIMLILLFSVQLGWFP 167
Cdd:PRK15110   63 GQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGFSIPVFWLALLLTLFFSLTLGWLP 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 168 VSG---------------YGSDWLDKA-----------HHMVLPCLTIALALSAVLIRNLRASMLMELQADHVTAARARG 221
Cdd:PRK15110  143 VSGrfdllyevkpvtgfaLIDAWLSDSpwrdemimsaiRHMILPVITLAVAPTTEVIRLMRISTIEVYDQNYVKAAATRG 222

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 222 VSEGAVFRRHVLPNSLVPSINLLAVNIGWLISGTVVIESLFAIPGIGQLLVRGIFSRDYMVVQGVAMVLACATVIVNFLA 301
Cdd:PRK15110  223 LSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVMVVGSLVIIVNVLS 302


                  ....*....
gi 1499472791 302 DVATVAIDP 310
Cdd:PRK15110  303 DILGAMANP 311
PRK15133 PRK15133
microcin C ABC transporter permease YejB; Provisional
 8-313 5.70e-33

microcin C ABC transporter permease YejB; Provisional


Pssm-ID: 185087 [Multi-domain]  Cd Length: 364  Bit Score: 124.86  E-value: 5.70e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791   8 FILQRPLQLLPVLFGISLVTFILVRSIPGDP-----ARILLGARS---------------------------------TP 49
Cdd:PRK15133    4 YLIRRLLLVIPTLWAIITINFFIVQIAPGGPvdqaiAAIEFGQAGglpgaggegvrashaqtgvgnisdsnyrggrglDP 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791  50 QALANIRAQYGLDEPLWTQYVYFMKNLLQGDMGKSLLYKIDVLKLIVTRLEPTVFLVCGSVLLALLIAVPLATVAARNKG 129
Cdd:PRK15133   84 EVIAEITHRYGFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAVRNG 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 130 SWGDNLIRVFTTTGLGMPAFWLGIMLILLFS--VQLGWFPVSGYGSD------WLDKAH----HMVLPCLTIALALSAVL 197
Cdd:PRK15133  164 SRFDVWSSAFIIIGYAIPAFLFAILLIVFFAggSYFDLFPLRGLVSAnfdslpWYQKITdylwHITLPVLATVIGGFAAL 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 198 IRNLRASMLMELQADHVTAARARGVSEGAVFRRHVLPNSLVPSI-NLLAVNIGWLISGTVVIESLFAIPGIGQLLVRGIF 276
Cdd:PRK15133  244 TMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIaGFPATFISMFFTGSLLIEVMFSLNGLGLLGYEATV 323

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1499472791 277 SRDYMVVQGVAMVLACATVIVNFLADVATVAIDPRVN 313
Cdd:PRK15133  324 SRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRID 360
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 117-312 2.02e-29

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 110.85  E-value: 2.02e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 117 AVPLATVAARNKGSWGDNLIRVFTTTGLGMPAFWLGIMLILLFsvqlgwfpvsgygsdWLDKAHHMVLPCLTIALALSAV 196
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA---------------ILSILGHGILPAIILALLGWAG 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 197 LIRNLRASMLMELQADHVTAARARGVSEGAVFRRHVLPNSLVPSINLLAVNIGWLISGTVVIESLFAIPGIGQLLVRGIF 276
Cdd:pfam00528  66 YARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAIL 145

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1499472791 277 SRDYMVVQGVAMVLACATVIVNFLADVATVAIDPRV 312
Cdd:pfam00528 146 GYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRV 181
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 102-299 2.63e-19

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 83.87  E-value: 2.63e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 102 TVFLVCGSVLLALLIAVPLATVAARnKGSWGDNLIRVFTTTGLGMPAFWLGIMLILLFSVQLGWFPVSGYGsdwldkahh 181
Cdd:cd06261     4 TLLLALIATLLALVLGLLLGIILAR-KRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLG--------- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 182 mvLPCLTIALALSAVLIRNLRASMLMELQADHVTAARARGVSEGAVFRRHVLPNSLVPSINLLAVNIGWLISGTVVIESL 261
Cdd:cd06261    74 --LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFL 151

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1499472791 262 FA-IPGIGQLLVRGIFSRDYMVVQGVAMVLACATVIVNF 299
Cdd:cd06261   152 GGgEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
BPD_transp_1_N pfam19300
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ...
 6-105 5.35e-18

Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.


Pssm-ID: 437132 [Multi-domain]  Cd Length: 114  Bit Score: 78.03  E-value: 5.35e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791   6 YRFILQRPLQLLPVLFGISLVTFILVRSIPGDPARILLGARSTPQALANIRAQYGLDEPLWTQYVYFMKNLLQGDM---- 81
Cdd:pfam19300   2 LRFLVRRTLGAVVILLIISAVTFFLFYAIPRDPARLACGKNCTPETLALIRHNLGLDKPIPVQYWHFLSGIFAGRDfgav 81

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1499472791  82 --------GKSLLYKIDVLKLIVTRLEPTVFL 105
Cdd:pfam19300  82 ghcpapclGYSFANNEPVWDTIMDRFPTTLSL 113
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 90-252 1.48e-10

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 60.51  E-value: 1.48e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791  90 DVLKLIVTRLEPTVFLVCGSVLLALLIAVPLATVAARnKGSWGDNLIRVFTTTGLGMPAFWLGIMLILLFSVqlGWFPVs 169
Cdd:COG1173    69 DVLSRLLYGARISLLVGLLAVLIALVIGVLLGLLAGY-FGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGP--GLLNV- 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 170 gygsdwldkahhmvlpCLTIALALSAVLIRNLRASMLMELQADHVTAARARGVSEGAVFRRHVLPNSLVPSINLLAVNIG 249
Cdd:COG1173   145 ----------------ILALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIA 208


                  ...
gi 1499472791 250 WLI 252
Cdd:COG1173   209 SAI 211
YejE COG4239
ABC-type microcin C transport system, permease component YejE [Secondary metabolites ...
 147-244 4.04e-06

ABC-type microcin C transport system, permease component YejE [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443381 [Multi-domain]  Cd Length: 342  Bit Score: 47.84  E-value: 4.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 147 PAFWLGIMLILLFsvqlGWFPVSGYgsdwldkahhmvlpcltialalsavlirnLRASMLMELQADHVTAARARGVSEGA 226
Cdd:COG4239   201 PSFWLLLGILLLF----GWMGLVGV-----------------------------VRAEFLRARNLEYVRAARALGVSDRR 247

                          90
                  ....*....|....*...
gi 1499472791 227 VFRRHVLPNSLVPSINLL 244
Cdd:COG4239   248 IMFRHILPNAMVATLTFL 265
PRK15021 PRK15021
microcin C ABC transporter permease; Provisional
 131-274 1.27e-05

microcin C ABC transporter permease; Provisional


Pssm-ID: 184982 [Multi-domain]  Cd Length: 341  Bit Score: 46.13  E-value: 1.27e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 131 WGDNLIRVFTttglGMPAFWLGIMLILLFSVQLGWfpvsgygsdwldkahhmvLPCLTIALALSAvLIRNLRASMLMELQ 210
Cdd:PRK15021  175 WGQRFIEVWS----GMPTLFLIILLSSVVQPNFWW------------------LLAITVLFGWMS-LVGVVRAEFLRTRN 231

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1499472791 211 ADHVTAARARGVSEGAVFRRHVLPNSLVPSINLLAVnigWLISGTVVIESL--------FAIPGIGQLLVRG 274
Cdd:PRK15021  232 FDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPF---ILCSSITTLTSLdflgfglpLGSPSLGELLLQG 300
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
102-234 1.56e-04

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 43.23  E-value: 1.56e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499472791 102 TVFLVCGSVLLALLIAVPLATVAARNKGSWGdNLIRVFTTTGLGMPAFWLGIMLILLFsvqLGWFPVSGYGSDWLdkahh 181
Cdd:COG1178   343 SLLLALLAALLAVLLALLLAYLVRRRRGRLA-RLLDRLAMLPYAVPGIVLGLGLLLLF---NRPLPLLLYGTLAI----- 413

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1499472791 182 MVLPCLTIALALSavlIRNLRASMlMELQADHVTAARARGVSEGAVFRRHVLP 234
Cdd:COG1178   414 LVLAYVVRFLPFA---LRSLEAAL-AQIDPSLEEAARSLGASPLRTLRRVTLP 462
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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