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Conserved domains on  [gi|1508837852|gb|RNB37041|]
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N-acetyltransferase [Staphylococcus aureus]

Protein Classification

GNAT family N-acetyltransferase( domain architecture ID 10006981)

GNAT family N-acetyltransferase catalyzes the transfer of an acetyl group from acetyl-CoA to a substrate

CATH:  3.40.630.30
EC:  2.3.-.-
Gene Ontology:  GO:0016746|GO:0008080
PubMed:  27367672|26818562|15581578|10940244
SCOP:  3000403

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
yhbS COG3153
Predicted N-acetyltransferase YhbS [General function prediction only];
6-163 1.51e-21

Predicted N-acetyltransferase YhbS [General function prediction only];


:

Pssm-ID: 442387 [Multi-domain]  Cd Length: 142  Bit Score: 85.14  E-value: 1.51e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1508837852   6 IRLASEQDAEKLQQLMHEAFTPLRELGIdwpsvnanLDAVKENIDKNTTFVMTIDDEIISTItvRYPWGSVKSISGYPFV 85
Cdd:COG3153     1 IRPATPEDAEAIAALLRAAFGPGREAEL--------VDRLREDPAAGLSLVAEDDGEIVGHV--ALSPVDIDGEGPALLL 70

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1508837852  86 WWFATNPEYEGKGYGSQLLTYVEEAfLRDtLKSAAVTLGTSARLHPWllkiYEKRGYEIYSEHENDDGDLGVIMRKVL 163
Cdd:COG3153    71 GPLAVDPEYRGQGIGRALMRAALEA-ARE-RGARAVVLLGDPSLLPF----YERFGFRPAGELGLTLGPDEVFLAKEL 142
 
Name Accession Description Interval E-value
yhbS COG3153
Predicted N-acetyltransferase YhbS [General function prediction only];
6-163 1.51e-21

Predicted N-acetyltransferase YhbS [General function prediction only];


Pssm-ID: 442387 [Multi-domain]  Cd Length: 142  Bit Score: 85.14  E-value: 1.51e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1508837852   6 IRLASEQDAEKLQQLMHEAFTPLRELGIdwpsvnanLDAVKENIDKNTTFVMTIDDEIISTItvRYPWGSVKSISGYPFV 85
Cdd:COG3153     1 IRPATPEDAEAIAALLRAAFGPGREAEL--------VDRLREDPAAGLSLVAEDDGEIVGHV--ALSPVDIDGEGPALLL 70

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1508837852  86 WWFATNPEYEGKGYGSQLLTYVEEAfLRDtLKSAAVTLGTSARLHPWllkiYEKRGYEIYSEHENDDGDLGVIMRKVL 163
Cdd:COG3153    71 GPLAVDPEYRGQGIGRALMRAALEA-ARE-RGARAVVLLGDPSLLPF----YERFGFRPAGELGLTLGPDEVFLAKEL 142
Acetyltransf_7 pfam13508
Acetyltransferase (GNAT) domain; This domain catalyzes N-acetyltransferase reactions.
 50-144 3.16e-09

Acetyltransferase (GNAT) domain; This domain catalyzes N-acetyltransferase reactions.


Pssm-ID: 463905 [Multi-domain]  Cd Length: 84  Bit Score: 51.30  E-value: 3.16e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1508837852  50 DKNTTFVMTIDDEIISTITVRYPWGSvksisGYPFVWWFATNPEYEGKGYGSQLLTYVEEAFLRDTLKSAAVTLGTSARl 129
Cdd:pfam13508   1 PGGRFFVAEDDGKIVGFAALLPLDDE-----GALAELRLAVHPEYRGQGIGRALLEAAEAAAKEGGIKLLELETTNRAA- 74

                          90
                  ....*....|....*
gi 1508837852 130 hpwllKIYEKRGYEI 144
Cdd:pfam13508  75 -----AFYEKLGFEE 84
NAT_SF cd04301
N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer ...
 55-109 7.48e-07

N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransferase, Myristoyl-CoA: protein N-myristoyltransferase, and Acyl-homoserinelactone synthase which have a similar catalytic mechanism but differ in types of acyl groups transferred. Leucyl/phenylalanyl-tRNA-protein transferase and FemXAB nonribosomal peptidyltransferases which catalyze similar peptidyltransferase reactions are also included.


Pssm-ID: 173926 [Multi-domain]  Cd Length: 65  Bit Score: 44.57  E-value: 7.48e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1508837852  55 FVMTIDDEIISTITVRYPWGSvksiSGYPFVWWFATNPEYEGKGYGSQLLTYVEE 109
Cdd:cd04301     2 LVAEDDGEIVGFASLSPDGSG----GDTAYIGDLAVLPEYRGKGIGSALLEAAEE 52
 
Name Accession Description Interval E-value
yhbS COG3153
Predicted N-acetyltransferase YhbS [General function prediction only];
6-163 1.51e-21

Predicted N-acetyltransferase YhbS [General function prediction only];


Pssm-ID: 442387 [Multi-domain]  Cd Length: 142  Bit Score: 85.14  E-value: 1.51e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1508837852   6 IRLASEQDAEKLQQLMHEAFTPLRELGIdwpsvnanLDAVKENIDKNTTFVMTIDDEIISTItvRYPWGSVKSISGYPFV 85
Cdd:COG3153     1 IRPATPEDAEAIAALLRAAFGPGREAEL--------VDRLREDPAAGLSLVAEDDGEIVGHV--ALSPVDIDGEGPALLL 70

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1508837852  86 WWFATNPEYEGKGYGSQLLTYVEEAfLRDtLKSAAVTLGTSARLHPWllkiYEKRGYEIYSEHENDDGDLGVIMRKVL 163
Cdd:COG3153    71 GPLAVDPEYRGQGIGRALMRAALEA-ARE-RGARAVVLLGDPSLLPF----YERFGFRPAGELGLTLGPDEVFLAKEL 142
ArgA COG1246
N-acetylglutamate synthase or related acetyltransferase, GNAT family [Amino acid transport and ...
 5-163 2.82e-12

N-acetylglutamate synthase or related acetyltransferase, GNAT family [Amino acid transport and metabolism]; N-acetylglutamate synthase or related acetyltransferase, GNAT family is part of the Pathway/BioSystem: Arginine biosynthesis


Pssm-ID: 440859 [Multi-domain]  Cd Length: 132  Bit Score: 60.78  E-value: 2.82e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1508837852   5 MIRLASEQDAEKLQQLMHEaftplrelgidwpsvnanlDAVKENIDknTTFVMTIDDEIISTITVRYPWGsvksisGYPF 84
Cdd:COG1246     2 TIRPATPDDVPAILELIRP-------------------YALEEEIG--EFWVAEEDGEIVGCAALHPLDE------DLAE 54

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1508837852  85 VWWFATNPEYEGKGYGSQLLTYVEEAFLRDTLKSaaVTLGTSARLHPWllkiYEKRGYEIYSEHENDDGDLG----VIMR 160
Cdd:COG1246    55 LRSLAVHPDYRGRGIGRRLLEALLAEARELGLKR--LFLLTTSAAIHF----YEKLGFEEIDKEDLPYAKVWqrdsVVME 128


                  ...
gi 1508837852 161 KVL 163
Cdd:COG1246   129 KDL 131
ElaA COG2153
Predicted N-acyltransferase, GNAT family [General function prediction only];
50-163 5.12e-10

Predicted N-acyltransferase, GNAT family [General function prediction only];


Pssm-ID: 441756 [Multi-domain]  Cd Length: 134  Bit Score: 54.81  E-value: 5.12e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1508837852  50 DKNTT-FVMTIDDEIISTITVRYPWGSVKSISGypfvwwFATNPEYEGKGYGSQLLTYVEEAFLRdtLKSAAVTLgtSAR 128
Cdd:COG2153    31 DEDARhLLAYDDGELVATARLLPPGDGEAKIGR------VAVLPEYRGQGLGRALMEAAIEEARE--RGARRIVL--SAQ 100

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1508837852 129 LHpwLLKIYEKRGYEIYSEHENDDGDLGVIMRKVL 163
Cdd:COG2153   101 AH--AVGFYEKLGFVPVGEEFLEAGIPHIDMRKPL 133
RimI COG0456
Ribosomal protein S18 acetylase RimI and related acetyltransferases [Translation, ribosomal ...
 73-163 1.26e-09

Ribosomal protein S18 acetylase RimI and related acetyltransferases [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440224 [Multi-domain]  Cd Length: 92  Bit Score: 52.74  E-value: 1.26e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1508837852  73 WGSVKSISGYPFVWWFATNPEYEGKGYGSQLLTYVEEAFLRDTLKSaaVTLGTSARlHPWLLKIYEKRGYEIYSEHENDD 152
Cdd:COG0456     4 LLGLVDGGDEAEIEDLAVDPEYRGRGIGRALLEAALERARERGARR--LRLEVRED-NEAAIALYEKLGFEEVGERPNYY 80

                          90
                  ....*....|.
gi 1508837852 153 GDLGVIMRKVL 163
Cdd:COG0456    81 GDDALVMEKEL 91
Acetyltransf_7 pfam13508
Acetyltransferase (GNAT) domain; This domain catalyzes N-acetyltransferase reactions.
 50-144 3.16e-09

Acetyltransferase (GNAT) domain; This domain catalyzes N-acetyltransferase reactions.


Pssm-ID: 463905 [Multi-domain]  Cd Length: 84  Bit Score: 51.30  E-value: 3.16e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1508837852  50 DKNTTFVMTIDDEIISTITVRYPWGSvksisGYPFVWWFATNPEYEGKGYGSQLLTYVEEAFLRDTLKSAAVTLGTSARl 129
Cdd:pfam13508   1 PGGRFFVAEDDGKIVGFAALLPLDDE-----GALAELRLAVHPEYRGQGIGRALLEAAEAAAKEGGIKLLELETTNRAA- 74

                          90
                  ....*....|....*
gi 1508837852 130 hpwllKIYEKRGYEI 144
Cdd:pfam13508  75 -----AFYEKLGFEE 84
Acetyltransf_10 pfam13673
Acetyltransferase (GNAT) domain; This family contains proteins with N-acetyltransferase ...
 43-163 8.87e-09

Acetyltransferase (GNAT) domain; This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.


Pssm-ID: 463953 [Multi-domain]  Cd Length: 128  Bit Score: 51.12  E-value: 8.87e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1508837852  43 DAVKENIDK--NTTFVMTIDDEIISTITVRYPWGsvksISGypfvwwFATNPEYEGKGYGSQLLTYVEEAFLRDTLKSAA 120
Cdd:pfam13673  20 EALRERIDQgeYFFFVAFEGGQIVGVIALRDRGH----ISL------LFVDPDYQGQGIGKALLEAVEDYAEKDGIKLSE 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1508837852 121 VTLGTSarlhPWLLKIYEKRGYEIYSEHENDDGDLGVIMRKVL 163
Cdd:pfam13673  90 LTVNAS----PYAVPFYEKLGFRATGPEQEFNGIRFVPMEKEL 128
Eis COG4552
Predicted acetyltransferase [General function prediction only];
6-148 2.79e-08

Predicted acetyltransferase [General function prediction only];


Pssm-ID: 443616 [Multi-domain]  Cd Length: 393  Bit Score: 52.21  E-value: 2.79e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1508837852   6 IRLASEQDAEKLQQLMHEAFtplrelgiDWPSVNANLDAVKENIDKNTTFVMTIDDEIISTITVrYP----WGSVKsisg 81
Cdd:COG4552     3 IRPLTEDDLDAFARLLAYAF--------GPEPDDEELEAYRPLLEPGRVLGVFDDGELVGTLAL-YPftlnVGGAR---- 69

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1508837852  82 YP--FVWWFATNPEYEGKGYGSQLLTyveeAFLRDtLKSAAVTLGTsarLHPWLLKIYEKRGYEIYSEH 148
Cdd:COG4552    70 VPmaGITGVAVAPEHRRRGVARALLR----EALAE-LRERGQPLSA---LYPFEPGFYRRFGYELAGDR 130
MnaT COG1247
L-amino acid N-acyltransferase MnaT [Amino acid transport and metabolism];
5-163 3.62e-08

L-amino acid N-acyltransferase MnaT [Amino acid transport and metabolism];


Pssm-ID: 440860 [Multi-domain]  Cd Length: 163  Bit Score: 50.38  E-value: 3.62e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1508837852   5 MIRLASEQDAEKLQQLMHEAftpLRELGIDWPSVNANLDAVKENIDKNT-----TFVMTIDDEIISTITVrypwGSVKSI 79
Cdd:COG1247     3 TIRPATPEDAPAIAAIYNEA---IAEGTATFETEPPSEEEREAWFAAILapgrpVLVAEEDGEVVGFASL----GPFRPR 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1508837852  80 SGYPFVWWFA--TNPEYEGKGYGSQLLTYVEEAFLRDTLKSA-AVTLGTSARlhpwLLKIYEKRGYEIYSEHENDDGDLG 156
Cdd:COG1247    76 PAYRGTAEESiyVDPDARGRGIGRALLEALIERARARGYRRLvAVVLADNEA----SIALYEKLGFEEVGTLPEVGFKFG 151

                         170
                  ....*....|..
gi 1508837852 157 -----VIMRKVL 163
Cdd:COG1247   152 rwldlVLMQKRL 163
Acetyltransf_1 pfam00583
Acetyltransferase (GNAT) family; This family contains proteins with N-acetyltransferase ...
 29-142 1.33e-07

Acetyltransferase (GNAT) family; This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.


Pssm-ID: 395465 [Multi-domain]  Cd Length: 116  Bit Score: 47.90  E-value: 1.33e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1508837852  29 RELGIDWPSVNANLDAVKENIDKNTTFVMTIDDEIISTITVRYPWGSVKsisgYPFVWWFATNPEYEGKGYGSQLLTYVE 108
Cdd:pfam00583  10 EEFPEPWPDEPLDLLEDWDEDASEGFFVAEEDGELVGFASLSIIDDEPP----VGEIEGLAVAPEYRGKGIGTALLQALL 85

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1508837852 109 EAFLRDTLKsaAVTLGTSARLHPwLLKIYEKRGY 142
Cdd:pfam00583  86 EWARERGCE--RIFLEVAADNLA-AIALYEKLGF 116
COG3393 COG3393
Predicted acetyltransferase, GNAT family [General function prediction only];
62-147 3.52e-07

Predicted acetyltransferase, GNAT family [General function prediction only];


Pssm-ID: 442620 [Multi-domain]  Cd Length: 86  Bit Score: 46.06  E-value: 3.52e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1508837852  62 EIISTITVRYPWGSVKSISGypfVWwfaTNPEYEGKGYGSQLLTYVEEAFLRDTLKSaaVTLGTSARlHPWLLKIYEKRG 141
Cdd:COG3393     1 ELVAMAGVRAESPGVAEISG---VY---THPEYRGRGLASALVAALAREALARGART--PFLYVDAD-NPAARRLYERLG 71


                  ....*.
gi 1508837852 142 YEIYSE 147
Cdd:COG3393    72 FRPVGE 77
NAT_SF cd04301
N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer ...
 55-109 7.48e-07

N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransferase, Myristoyl-CoA: protein N-myristoyltransferase, and Acyl-homoserinelactone synthase which have a similar catalytic mechanism but differ in types of acyl groups transferred. Leucyl/phenylalanyl-tRNA-protein transferase and FemXAB nonribosomal peptidyltransferases which catalyze similar peptidyltransferase reactions are also included.


Pssm-ID: 173926 [Multi-domain]  Cd Length: 65  Bit Score: 44.57  E-value: 7.48e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1508837852  55 FVMTIDDEIISTITVRYPWGSvksiSGYPFVWWFATNPEYEGKGYGSQLLTYVEE 109
Cdd:cd04301     2 LVAEDDGEIVGFASLSPDGSG----GDTAYIGDLAVLPEYRGKGIGSALLEAAEE 52
PhnO COG0454
N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2) [Transcription, ...
 84-163 1.61e-05

N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2) [Transcription, General function prediction only];


Pssm-ID: 440222 [Multi-domain]  Cd Length: 136  Bit Score: 42.73  E-value: 1.61e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1508837852  84 FVWWFATNPEYEGKGYGSQLLTYVEEAFLRDTLKSAAVTLGtsaRLHPWLLKIYEKRGYEIYSEHENddgDLGVIMRKVL 163
Cdd:COG0454    60 ELKRLYVLPEYRGKGIGKALLEALLEWARERGCTALELDTL---DGNPAAIRFYERLGFKEIERYVA---YVGGEFEKEL 133
Acetyltransf_9 pfam13527
Acetyltransferase (GNAT) domain; This domain catalyzes N-acetyltransferase reactions.
 6-144 6.52e-04

Acetyltransferase (GNAT) domain; This domain catalyzes N-acetyltransferase reactions.


Pssm-ID: 404421 [Multi-domain]  Cd Length: 124  Bit Score: 37.94  E-value: 6.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1508837852   6 IRLASEQDAEKLQQLMHEAFTPLRELGIDwpsvnanlDAVKENIDKNTTFVMTIDDEIISTI-----TVRYPWGSVKsis 80
Cdd:pfam13527   1 IRPLTEDEFDEVLRLLEYAFQDEDSPELR--------EYFRPLLEEGRVLGAFDDGELVSTLalypfELNVPGKTLP--- 69

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1508837852  81 gYPFVWWFATNPEYEGKGYGSQLLTYVEEaflrdTLKSAAVTLGTsarLHPWLLKIYEKRGYEI 144
Cdd:pfam13527  70 -AAGITGVATYPEYRGRGVMSRLLRRSLE-----EMRERGVPLSF---LYPSSYPIYRRFGYEI 124
RimL COG1670
Protein N-acetyltransferase, RimJ/RimL family [Translation, ribosomal structure and biogenesis, ...
 6-143 8.13e-04

Protein N-acetyltransferase, RimJ/RimL family [Translation, ribosomal structure and biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 441276 [Multi-domain]  Cd Length: 173  Bit Score: 38.44  E-value: 8.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1508837852   6 IRLASEQDAEKLQQLMH--EAFTPLRELGIDWPSVNANLDAVKENIDKNTTFVMTI----DDEIISTITVRYPWGSVKSI 79
Cdd:COG1670    10 LRPLRPEDAEALAELLNdpEVARYLPGPPYSLEEARAWLERLLADWADGGALPFAIedkeDGELIGVVGLYDIDRANRSA 89

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1508837852  80 SgypFVWWFAtnPEYEGKGYGSQLLTYVEEaFLRDTLKSAAVTLGTSARLHPWlLKIYEKRGYE 143
Cdd:COG1670    90 E---IGYWLA--PAYWGKGYATEALRALLD-YAFEELGLHRVEAEVDPDNTAS-IRVLEKLGFR 146
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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