NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1511435818|gb|RNF71462|]
View 

transcriptional regulator [Pseudomonas putida]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Mor super family cl02360
Mor transcription activator family; Mor (Middle operon regulator) is a sequence specific DNA ...
 53-121 1.16e-09

Mor transcription activator family; Mor (Middle operon regulator) is a sequence specific DNA binding protein. It mediates transcription activation through its interactions with the C-terminal domains of the alpha and sigma subunits of bacterial RNA polymerase. The N terminal region of Mor is the dimerization region, and the C terminal contains a helix-turn-helix motif which binds DNA.


The actual alignment was detected with superfamily member COG5566:

Pssm-ID: 470549  Cd Length: 120  Bit Score: 51.91  E-value: 1.16e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511435818  53 LADVLPAEALDALIKRFAGVALEIPKADHFLRQLRNQQIQKEsANGLSRSLLANKYGLSLRQIGNI-RRQ 121
Cdd:COG5566    37 LAELIGLEVALALASYYGGQNIYFPKGDSLRRALRDLEIWRE-FNGNNHRELARKYGLSERWIYEIvKRV 105
 
Name Accession Description Interval E-value
Mor COG5566
Transcriptional regulator, middle operon regulator (Mor) family [Transcription, Mobilome: ...
 53-121 1.16e-09

Transcriptional regulator, middle operon regulator (Mor) family [Transcription, Mobilome: prophages, transposons];


Pssm-ID: 444308  Cd Length: 120  Bit Score: 51.91  E-value: 1.16e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511435818  53 LADVLPAEALDALIKRFAGVALEIPKADHFLRQLRNQQIQKEsANGLSRSLLANKYGLSLRQIGNI-RRQ 121
Cdd:COG5566    37 LAELIGLEVALALASYYGGQNIYFPKGDSLRRALRDLEIWRE-FNGNNHRELARKYGLSERWIYEIvKRV 105
Mor pfam08765
Mor transcription activator family; Mor (Middle operon regulator) is a sequence specific DNA ...
 50-115 4.97e-04

Mor transcription activator family; Mor (Middle operon regulator) is a sequence specific DNA binding protein. It mediates transcription activation through its interactions with the C-terminal domains of the alpha and sigma subunits of bacterial RNA polymerase. The N terminal region of Mor is the dimerization region, and the C terminal contains a helix-turn-helix motif which binds DNA.


Pssm-ID: 400902  Cd Length: 107  Bit Score: 36.88  E-value: 4.97e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1511435818  50 RTKLADVLPAEALDALIKRFAGVALEIPKADHFLRQLRNQQIQKEsANGLSRSLLANKYGLSLRQI 115
Cdd:pfam08765  24 DNELAEQIGIEVADALAAHWGGQQIYIPRGQSLRLALRDLEIYNE-FNGNNHAELARKYGVSEQWI 88
 
Name Accession Description Interval E-value
Mor COG5566
Transcriptional regulator, middle operon regulator (Mor) family [Transcription, Mobilome: ...
 53-121 1.16e-09

Transcriptional regulator, middle operon regulator (Mor) family [Transcription, Mobilome: prophages, transposons];


Pssm-ID: 444308  Cd Length: 120  Bit Score: 51.91  E-value: 1.16e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511435818  53 LADVLPAEALDALIKRFAGVALEIPKADHFLRQLRNQQIQKEsANGLSRSLLANKYGLSLRQIGNI-RRQ 121
Cdd:COG5566    37 LAELIGLEVALALASYYGGQNIYFPKGDSLRRALRDLEIWRE-FNGNNHRELARKYGLSERWIYEIvKRV 105
Mor pfam08765
Mor transcription activator family; Mor (Middle operon regulator) is a sequence specific DNA ...
 50-115 4.97e-04

Mor transcription activator family; Mor (Middle operon regulator) is a sequence specific DNA binding protein. It mediates transcription activation through its interactions with the C-terminal domains of the alpha and sigma subunits of bacterial RNA polymerase. The N terminal region of Mor is the dimerization region, and the C terminal contains a helix-turn-helix motif which binds DNA.


Pssm-ID: 400902  Cd Length: 107  Bit Score: 36.88  E-value: 4.97e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1511435818  50 RTKLADVLPAEALDALIKRFAGVALEIPKADHFLRQLRNQQIQKEsANGLSRSLLANKYGLSLRQI 115
Cdd:pfam08765  24 DNELAEQIGIEVADALAAHWGGQQIYIPRGQSLRLALRDLEIYNE-FNGNNHAELARKYGVSEQWI 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH