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Conserved domains on  [gi|1519402282|gb|RPE90647|]
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uncharacterized protein UPF0253 [Vibrio crassostreae]

Protein Classification

YaeP family protein( domain architecture ID 10012235)

YaeP family protein similar to Escherichia coli UPF0253 protein YaeP

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK04964 PRK04964
hypothetical protein; Provisional
 3-67 2.88e-29

hypothetical protein; Provisional


:

Pssm-ID: 179901  Cd Length: 66  Bit Score: 98.22  E-value: 2.88e-29
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1519402282  3 VYDCCDLVRELYSQIGSGDQGYIPKAITCAVKTLNDLAADESLPKEARERAAFAAANLLISDFED 67
Cdd:PRK04964   1 MYKYCELVRKRYAEIGSGDLGYVPDALGCVLKALNEIAADEALPESVREKAAYAAANLLVSDYVD 65
 
Name Accession Description Interval E-value
PRK04964 PRK04964
hypothetical protein; Provisional
 3-67 2.88e-29

hypothetical protein; Provisional


Pssm-ID: 179901  Cd Length: 66  Bit Score: 98.22  E-value: 2.88e-29
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1519402282  3 VYDCCDLVRELYSQIGSGDQGYIPKAITCAVKTLNDLAADESLPKEARERAAFAAANLLISDFED 67
Cdd:PRK04964   1 MYKYCELVRKRYAEIGSGDLGYVPDALGCVLKALNEIAADEALPESVREKAAYAAANLLVSDYVD 65
UPF0253 pfam06786
Uncharacterized protein family (UPF0253);
1-67 5.72e-27

Uncharacterized protein family (UPF0253);


Pssm-ID: 429118  Cd Length: 65  Bit Score: 92.50  E-value: 5.72e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1519402282  1 MKVYdcCDLVRELYSQIGSGDQGYIPKAITCAVKTLNDLAADESLPKEARERAAFAAANLLISDFED 67
Cdd:pfam06786  1 MQVY--CELIRRFYNQIGSGDQGYVPKAITCAIKTLDEIAANEALPEDVREQAAYAAANLLISDYED 65
 
Name Accession Description Interval E-value
PRK04964 PRK04964
hypothetical protein; Provisional
 3-67 2.88e-29

hypothetical protein; Provisional


Pssm-ID: 179901  Cd Length: 66  Bit Score: 98.22  E-value: 2.88e-29
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1519402282  3 VYDCCDLVRELYSQIGSGDQGYIPKAITCAVKTLNDLAADESLPKEARERAAFAAANLLISDFED 67
Cdd:PRK04964   1 MYKYCELVRKRYAEIGSGDLGYVPDALGCVLKALNEIAADEALPESVREKAAYAAANLLVSDYVD 65
UPF0253 pfam06786
Uncharacterized protein family (UPF0253);
1-67 5.72e-27

Uncharacterized protein family (UPF0253);


Pssm-ID: 429118  Cd Length: 65  Bit Score: 92.50  E-value: 5.72e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1519402282  1 MKVYdcCDLVRELYSQIGSGDQGYIPKAITCAVKTLNDLAADESLPKEARERAAFAAANLLISDFED 67
Cdd:pfam06786  1 MQVY--CELIRRFYNQIGSGDQGYVPKAITCAIKTLDEIAANEALPEDVREQAAYAAANLLISDYED 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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