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Conserved domains on  [gi|1519825966|gb|RPH80628|]
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MAG: hypothetical protein EHM88_12390 [Candidatus Rokuibacteriota bacterium]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ArsC_rel_Se_1 super family cl49213
ArsC family (seleno)protein; Weak hits to Pfam model PF03960 and to COG1393 suggest a ...
 2-97 4.17e-37

ArsC family (seleno)protein; Weak hits to Pfam model PF03960 and to COG1393 suggest a relationship to glutaredoxin-like arsenate reductase protein ArsC. This family contains significant numbers of selenoproteins.


The actual alignment was detected with superfamily member NF041106:

Pssm-ID: 469030  Cd Length: 107  Bit Score: 120.73  E-value: 4.17e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519825966   2 TCARTQGFLAKRKITVAAQRDAKKATIRGDDALGVLKDVDRLCVAKGKRVVHLDLRREKPPRAELLGLLLGPTGNLRAPT 81
Cdd:NF041106   12 TCKKAQAFLEEHGIEVKETVDARKERLDPEEALALLKGVDKIYAAKGKKVVEFDLKKDKPDDEELLALLIGPTGNLRAPT 91

                          90
                  ....*....|....*.
gi 1519825966  82 LRKGRTLIVGFDEATY 97
Cdd:NF041106   92 LRIGKTLLVGFNEEMY 107
 
Name Accession Description Interval E-value
ArsC_rel_Se_1 NF041106
ArsC family (seleno)protein; Weak hits to Pfam model PF03960 and to COG1393 suggest a ...
 2-97 4.17e-37

ArsC family (seleno)protein; Weak hits to Pfam model PF03960 and to COG1393 suggest a relationship to glutaredoxin-like arsenate reductase protein ArsC. This family contains significant numbers of selenoproteins.


Pssm-ID: 469030  Cd Length: 107  Bit Score: 120.73  E-value: 4.17e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519825966   2 TCARTQGFLAKRKITVAAQRDAKKATIRGDDALGVLKDVDRLCVAKGKRVVHLDLRREKPPRAELLGLLLGPTGNLRAPT 81
Cdd:NF041106   12 TCKKAQAFLEEHGIEVKETVDARKERLDPEEALALLKGVDKIYAAKGKKVVEFDLKKDKPDDEELLALLIGPTGNLRAPT 91

                          90
                  ....*....|....*.
gi 1519825966  82 LRKGRTLIVGFDEATY 97
Cdd:NF041106   92 LRIGKTLLVGFNEEMY 107
 
Name Accession Description Interval E-value
ArsC_rel_Se_1 NF041106
ArsC family (seleno)protein; Weak hits to Pfam model PF03960 and to COG1393 suggest a ...
 2-97 4.17e-37

ArsC family (seleno)protein; Weak hits to Pfam model PF03960 and to COG1393 suggest a relationship to glutaredoxin-like arsenate reductase protein ArsC. This family contains significant numbers of selenoproteins.


Pssm-ID: 469030  Cd Length: 107  Bit Score: 120.73  E-value: 4.17e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519825966   2 TCARTQGFLAKRKITVAAQRDAKKATIRGDDALGVLKDVDRLCVAKGKRVVHLDLRREKPPRAELLGLLLGPTGNLRAPT 81
Cdd:NF041106   12 TCKKAQAFLEEHGIEVKETVDARKERLDPEEALALLKGVDKIYAAKGKKVVEFDLKKDKPDDEELLALLIGPTGNLRAPT 91

                          90
                  ....*....|....*.
gi 1519825966  82 LRKGRTLIVGFDEATY 97
Cdd:NF041106   92 LRIGKTLLVGFNEEMY 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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