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Conserved domains on  [gi|1525406561|gb|RQU02775|]
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flagellin [Burkholderia cepacia]

Protein Classification

flagellin( domain architecture ID 11483458)

flagellin polymerizes to form the filaments of bacterial flagella; similar to Vibrio cholerae flagellins A-E, and to Pseudomonas aeruginosa A-type flagellin FliC

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK08869 PRK08869
polar flagellin E;
1-384 2.71e-135

polar flagellin E;


:

Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 391.22  E-value: 2.71e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   1 MLGINSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSA 80
Cdd:PRK08869    1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  81 LSSLTNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILNGNAGIVSFQVGANVGQTISLDL 160
Cdd:PRK08869   81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTKSFQIGANSGEAVSLDL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 161 SQSMSAAKIGGGLVQKGQTvgtvtglsldTAGVYTSSGAAITAINVLSDGQGGYTFT-DQNGGAIAQTVAQSVFGASATT 239
Cdd:PRK08869  161 KSMRSDAKIMGGVSYDAEG----------GADKDWTVGAGNTDLNVSFDDKGGETQAiTINAKAGDDIEELATYINGQTD 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 240 SNGTAVGNLSIQASATSTSMSSAALTAITNAVAQINAVNK-PATVSGLDISTVSGANVAMVSIDNALQTVNNVQAQLGAA 318
Cdd:PRK08869  231 GVGASVSEDGKLQLFAAGQKVSGGVSFSGGLAAELGLGNAtAVTVDDLDISTVGGAQQAVAVIDAALKYVDSHRADLGAF 310

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1525406561 319 QNRFTAIATAQQAESTDLSSAQSQITDANFAQETANMSKNQVLQQAGISVLAQANSLPQQVLKLLQ 384
Cdd:PRK08869  311 QNRFTHAINNLQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 376
 
Name Accession Description Interval E-value
PRK08869 PRK08869
polar flagellin E;
1-384 2.71e-135

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 391.22  E-value: 2.71e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   1 MLGINSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSA 80
Cdd:PRK08869    1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  81 LSSLTNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILNGNAGIVSFQVGANVGQTISLDL 160
Cdd:PRK08869   81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTKSFQIGANSGEAVSLDL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 161 SQSMSAAKIGGGLVQKGQTvgtvtglsldTAGVYTSSGAAITAINVLSDGQGGYTFT-DQNGGAIAQTVAQSVFGASATT 239
Cdd:PRK08869  161 KSMRSDAKIMGGVSYDAEG----------GADKDWTVGAGNTDLNVSFDDKGGETQAiTINAKAGDDIEELATYINGQTD 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 240 SNGTAVGNLSIQASATSTSMSSAALTAITNAVAQINAVNK-PATVSGLDISTVSGANVAMVSIDNALQTVNNVQAQLGAA 318
Cdd:PRK08869  231 GVGASVSEDGKLQLFAAGQKVSGGVSFSGGLAAELGLGNAtAVTVDDLDISTVGGAQQAVAVIDAALKYVDSHRADLGAF 310

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1525406561 319 QNRFTAIATAQQAESTDLSSAQSQITDANFAQETANMSKNQVLQQAGISVLAQANSLPQQVLKLLQ 384
Cdd:PRK08869  311 QNRFTHAINNLQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 376
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
4-384 2.18e-34

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 127.29  E-value: 2.18e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   4 INSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSS 83
Cdd:COG1344     3 ISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGALGE 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  84 LTNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILNGNAgivsfqvganvgqtisldlsqs 163
Cdd:COG1344    83 ITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTA---------------------- 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 164 msaakiggglvqkgqtvGTVTGLSLDTAGVYTSSGAAITAinvlsdgqggytftdqnggaiaqtvaqsvfgasattsngt 243
Cdd:COG1344   141 -----------------TDTPPFQVDYQGDAGQRTAALGA---------------------------------------- 163

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 244 avgnlsiqasatstsmssaaltaitnavaqinavnkpatvsgldistvsganvamvsIDNALQTVNNVQAQLGAAQNRFT 323
Cdd:COG1344   164 ---------------------------------------------------------LDAALDNVSSARAELGARQNRLE 186

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1525406561 324 AIATAQQAESTDLSSAQSQITDANFAQETANMSKNQVLQQAGISVLAQANSLPqqVLKLLQ 384
Cdd:COG1344   187 SAINNLSDLSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQANQLS--LLDLLR 245
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 4-140 5.86e-28

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 107.04  E-value: 5.86e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   4 INSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSS 83
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1525406561  84 LTNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILNGN 140
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGI 137
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 4-371 3.01e-18

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 84.32  E-value: 3.01e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   4 INSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSS 83
Cdd:TIGR02550   2 VSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  84 LTNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILNGNAGivsfqvganvgqtisldlsqs 163
Cdd:TIGR02550  82 VGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGTKT--------------------- 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 164 msaakiggglvqkgqtvgtvtglslDTAGVYTSSGAAITainvlsdgqggytftdQNGGAIAQTVAQSVFGASATTSNGT 243
Cdd:TIGR02550 141 -------------------------DTPPFSEDEGGEVT----------------YNGDGGQRKVQVASNRSMPIGHPGD 179

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 244 AVGNLSIQASATSTSMSSAALTAITNAVAQINAVNKPATVSgldistvsganVAMVSIDNALQTVNNVQAQLGAAQNRFT 323
Cdd:TIGR02550 180 KVFMSIPNNDKSVFSTGDDLIDALKKLEDALSSGDAKAALS-----------ASLNDLDKALDNVLSARAEVGARLNRLE 248

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 1525406561 324 AIATAQQAESTDLSSAQSQITDANFAQETANMSKNQVLQQAGISVLAQ 371
Cdd:TIGR02550 249 NLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAK 296
 
Name Accession Description Interval E-value
PRK08869 PRK08869
polar flagellin E;
1-384 2.71e-135

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 391.22  E-value: 2.71e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   1 MLGINSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSA 80
Cdd:PRK08869    1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  81 LSSLTNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILNGNAGIVSFQVGANVGQTISLDL 160
Cdd:PRK08869   81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTKSFQIGANSGEAVSLDL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 161 SQSMSAAKIGGGLVQKGQTvgtvtglsldTAGVYTSSGAAITAINVLSDGQGGYTFT-DQNGGAIAQTVAQSVFGASATT 239
Cdd:PRK08869  161 KSMRSDAKIMGGVSYDAEG----------GADKDWTVGAGNTDLNVSFDDKGGETQAiTINAKAGDDIEELATYINGQTD 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 240 SNGTAVGNLSIQASATSTSMSSAALTAITNAVAQINAVNK-PATVSGLDISTVSGANVAMVSIDNALQTVNNVQAQLGAA 318
Cdd:PRK08869  231 GVGASVSEDGKLQLFAAGQKVSGGVSFSGGLAAELGLGNAtAVTVDDLDISTVGGAQQAVAVIDAALKYVDSHRADLGAF 310

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1525406561 319 QNRFTAIATAQQAESTDLSSAQSQITDANFAQETANMSKNQVLQQAGISVLAQANSLPQQVLKLLQ 384
Cdd:PRK08869  311 QNRFTHAINNLQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 376
PRK06819 PRK06819
FliC/FljB family flagellin;
4-383 2.37e-73

FliC/FljB family flagellin;


Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 233.13  E-value: 2.37e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   4 INSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSS 83
Cdd:PRK06819    5 INTNSLSLLTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISIAQTTEGALNE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  84 LTNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILNGNAGiVSFQVGANVGQTISLDLSQS 163
Cdd:PRK06819   85 INNNLQRVRELTVQAQNGSNSSSDLDSIQDEISQRLAEIDRVSDQTQFNGVKVLAEDTT-MSIQVGANDGETIDINLQKI 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 164 MSaakiggglvqkgqtvgtvTGLSLDTAGVYTSSGAAITAINVLSDGQGGYTFTDQNGGAIAQTVAQSVFGASAT----- 238
Cdd:PRK06819  164 DS------------------KSLGLGSFSVSGVSGALTSLTFTDTALDTSVTGVTTTTALDFSDISTFAKGATVHgigdv 225

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 239 -TSNGTAVGNLSIQASATSTSMSSAALTAITNAVAQINAVNKPATVSGLDISTVSGANVAMVS----IDNALQTVNNVQA 313
Cdd:PRK06819  226 gTDGAYADGYVIRTTDGKQYKGEVDATNGKVTFADDANGDPITDATKLEAAAQFSPAGKATASpletLDDALKQVDGLRS 305

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 314 QLGAAQNRFTAIATAQQAESTDLSSAQSQITDANFAQETANMSKNQVLQQAGISVLAQANSLPQQVLKLL 383
Cdd:PRK06819  306 SLGAVQNRFESTVTNLNNTVTNLSSARSRIEDADYATEVSNMSRAQILQQAGTSVLAQANQVPQTVLSLL 375
PRK12802 PRK12802
flagellin; Provisional
 1-384 1.72e-60

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 196.64  E-value: 1.72e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   1 MLGINSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSA 80
Cdd:PRK12802    2 ALTVNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEGA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  81 LSSLTNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILNGNAGIVSFQVGANVGQTISLDL 160
Cdd:PRK12802   82 LQESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLDGSAGTMTFQVGANTGQSNQITF 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 161 SQSmsaakiggglvqkgqTVGTVTGLSLDTAGVYTSSGAAitainvlsdgqggytftdqnggaiaqtvaqsvfgasatts 240
Cdd:PRK12802  162 GLS---------------ASFDATGLGVGSGTLITGADSA---------------------------------------- 186

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 241 ngtavgnlsiqasatstsmssaaltaitnavaqinavnkpatvsgldiSTVSGANVAMVSIDNALQTVNNVQAQLGAAQN 320
Cdd:PRK12802  187 ------------------------------------------------AAETNAQAAITAIDAALQTINTTRADLGAAQN 218

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1525406561 321 RFTAIATAQQAESTDLSSAQSQITDANFAQETANMSKNQVLQQAGISVLAQANSLPQQVLKLLQ 384
Cdd:PRK12802  219 RLQSTISNLQNINENASAARGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKLLQ 282
PRK08026 PRK08026
FliC/FljB family flagellin;
4-384 1.69e-50

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 177.24  E-value: 1.69e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   4 INSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSS 83
Cdd:PRK08026    5 INTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEGALSE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  84 LTNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILNGNaGIVSFQVGANVGQTISLDLSQ- 162
Cdd:PRK08026   85 INNNLQRVRELTVQAATGTNSQSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNVLAKD-GSMKIQVGANDGETITIDLKKi 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561     --------------------------------------------------------------------------------
Cdd:PRK08026  164 dsdtlgldgfnvngkgtvantaatvsdltaagatldttglydvktknaalttadalaklgdgdkvtatatggdytynaks 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 163 ---------SMSAAKIGGGLVQKGQTVGTVTGLSLDTAGVYTSSG----------------------------------- 198
Cdd:PRK08026  244 gkyqaadlaATLTPDVGGTAGASYTIKDGTYEVNVDSDGKITLGGsalyidatgnlttnnagaatkatldalkktasega 323

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 199 ---------AAITAINVLSDGQGGYTFTDQNGGAIAQTVAQSVFGASATTSNGTAVGNLSIQASATSTSMSSAALTAI-- 267
Cdd:PRK08026  324 atakaalaaAGVTVADGVTAKTVKMSYTDKNGKVIDGGYAVKTGDDYYAADYDEITGAISATTTYYTAKDGTTKTAANkl 403

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 268 ------TNAVAQINAVNKPATVSGLDISTVSGANVA--MVSIDNALQTVNNVQAQLGAAQNRFTAIATAQQAESTDLSSA 339
Cdd:PRK08026  404 ggadgkTEVVTIDGKTYVASDGKQTTLAEAAATTTEnpLAALDAAIASIDKFRSSLGAVQNRLDSAVTNLNNTTTNLSEA 483

                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*
gi 1525406561 340 QSQITDANFAQETANMSKNQVLQQAGISVLAQANSLPQQVLKLLQ 384
Cdd:PRK08026  484 QSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLLQ 528
PRK12806 PRK12806
flagellin; Provisional
 4-384 8.49e-50

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 174.11  E-value: 8.49e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   4 INSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSS 83
Cdd:PRK12806    5 INTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEGAMQE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  84 LTNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILNGNAGIVSFQVGANVGQTISLDLSqS 163
Cdd:PRK12806   85 TTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRILDGSFSGASFQVGANSNQTINFSIG-S 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 164 MSAAKIGGGLVQKGQTVG---------------------TVTGLSLDTAGVYTSSGAAITAIN----------------- 205
Cdd:PRK12806  164 IKASSIGGIATATGTEVAgaaatditiaigggaatsinsSANFTGALNGQDATSAYAKAAAINdagigglsvtastsgtq 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 206 --------------------------------------------------VLSDGQGGYTFTDQNGGAIAQTVAQSVF-- 233
Cdd:PRK12806  244 avgaiggtagdtynltingvaiytnldvataltnsdlrdaingvsnqtgvVASLNGGNMTLTAADGRNITVTESGTGFta 323

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 234 GASATTSNGTAVGNLSIQASATSTSMSSAALTAITNAVAQINAVNKPATVSGLDISTVSGANVAMVSIDNALQTVNNVQA 313
Cdd:PRK12806  324 GTDGLTVTGGAFDGALRGTLSISAVDTIAIGGTVANIGLSANISKDTVGIDSLDVSTASGAQTAIKRIDAALNSVNSNRA 403

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1525406561 314 QLGAAQNRFTAIATAQQAESTDLSSAQSQITDANFAQETANMSKNQVLQQAGISVLAQANSLPQQVLKLLQ 384
Cdd:PRK12806  404 NMGALQNRFESTIANLQNVSDNLSAARSRIQDADYAAEMASLTKNQILQQAGTAMLAQANSLPQSVLSLLG 474
PRK12804 PRK12804
flagellin; Provisional
 4-384 8.55e-39

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 140.52  E-value: 8.55e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   4 INSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSS 83
Cdd:PRK12804    3 INHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGALTE 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  84 LTNSLQRIRQLAVQA-STGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILNG---------NAGIVSFQVGANVG 153
Cdd:PRK12804   83 THSILQRVRELVVQAgNTGTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLLDGtfkpaapaaGTKSLTFQIGANAA 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 154 QTISLDLsQSMSAAKIGgglvqkgqtvgtvtglsLDTAGVYTSSGAAITAINVlsdgqggytftdqnggaiaqtvaqSVF 233
Cdd:PRK12804  163 QQLSVNI-EAMSADALG-----------------VKDTDGTLVTGKSVSDIDV------------------------TKF 200

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 234 GASATTSNGTAVGNLSIqasatstsmssaaltaitnavaqinavnkpatvsgldistvsganvamvsIDNALQTVNNVQA 313
Cdd:PRK12804  201 ANAAAAADGGFDDQLKI--------------------------------------------------VDGAIKQVSDQRS 230

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1525406561 314 QLGAAQNRFTAIATAQQAESTDLSSAQSQITDANFAQETANMSKNQVLQQAGISVLAQANSLPQQVLKLLQ 384
Cdd:PRK12804  231 KLGAVQNRLEHTINNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQLLR 301
PRK12808 PRK12808
flagellin; Provisional
 4-384 9.28e-39

flagellin; Provisional


Pssm-ID: 237212 [Multi-domain]  Cd Length: 476  Bit Score: 144.33  E-value: 9.28e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   4 INSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSS 83
Cdd:PRK12808    3 INTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVAANNTQDGMSLIRTADSAMNS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  84 LTNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILNGNAGI-VSFQVGANVGQTISLDL-S 161
Cdd:PRK12808   83 VSNILLRMRDIANQSANGTNTDKNQAALQKEFAELQKQITYIADNTQFNDKNLLNSNSSInIQTLDSSDGDKQIGIDLkS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 162 QSMSAAKI------------GGGLVQKGQTVGTVTGLSLDTAGVY-----TSSGAAITAINVLSDGQGGYTFTDQNGGAI 224
Cdd:PRK12808  163 ATLEALGIndlsigantdieAVSTKIAALDKNTIAKATVEAKAAFdkakdDTKAEDSNILDAAADGFKDGKADDAAKDVE 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 225 AQTVAQSVFGASATTSNGTAVGNLSIQASATSTSMSSAALTAITNAVAQINAVNKPATVSGL------------------ 286
Cdd:PRK12808  243 AIKTALSAFTGAATLEEAEAAKTAFEVAQKDLVDTYTKKAALTKDAVADLDTAKTTSTRSKAakdlvaaydkaksgakpn 322

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 287 --------------------------------------------------------DISTVSGANVAMVSIDNALQTVNN 310
Cdd:PRK12808  323 dvakayleakmayekdnnaidgkskleaaddalekdaiktdaskvlvpkleaakkaTTNSKADSLDAVKAIDEALKTVAD 402

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1525406561 311 VQAQLGAAQNRFTAIATAQQAESTDLSSAQSQITDANFAQETANMSKNQVLQQAGISVLAQANSLPQQVLKLLQ 384
Cdd:PRK12808  403 NRATLGATLNRLDFNVNNLKSQSSSMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLLQ 476
PRK12807 PRK12807
flagellin; Provisional
 4-384 2.33e-38

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 139.19  E-value: 2.33e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   4 INSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSS 83
Cdd:PRK12807    3 INTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKASQNTQDGMSLIRTAESAMNS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  84 LTNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILnGNAGIVSFQVGANVGQTISLDlsqs 163
Cdd:PRK12807   83 VSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLL-AGTGAVTIGSTSISGAEISIE---- 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 164 msaakiggglvqkgqtvgtvtglsldtagvYTSSGAAITAINVlsdgqggytftdqnggaiaqtvaqsvfgasattsngt 243
Cdd:PRK12807  158 ------------------------------TLDSSATNQQITI------------------------------------- 170

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 244 avgnlsiqasatstsmssaALTAITNAVAQINAVNKPATvsgldISTVSGANVAMVSIDNALQTVNNVQAQLGAAQNRFT 323
Cdd:PRK12807  171 -------------------KLANTTAEKLGIDATTSNIS-----ISGAASALAAISALNTALNTVAGNRATLGATLNRLD 226

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1525406561 324 AIATAQQAESTDLSSAQSQITDANFAQETANMSKNQVLQQAGISVLAQANSLPQQVLKLLQ 384
Cdd:PRK12807  227 RNVENLNNQATNMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLLQ 287
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
4-384 2.18e-34

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 127.29  E-value: 2.18e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   4 INSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSS 83
Cdd:COG1344     3 ISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGALGE 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  84 LTNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILNGNAgivsfqvganvgqtisldlsqs 163
Cdd:COG1344    83 ITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTA---------------------- 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 164 msaakiggglvqkgqtvGTVTGLSLDTAGVYTSSGAAITAinvlsdgqggytftdqnggaiaqtvaqsvfgasattsngt 243
Cdd:COG1344   141 -----------------TDTPPFQVDYQGDAGQRTAALGA---------------------------------------- 163

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 244 avgnlsiqasatstsmssaaltaitnavaqinavnkpatvsgldistvsganvamvsIDNALQTVNNVQAQLGAAQNRFT 323
Cdd:COG1344   164 ---------------------------------------------------------LDAALDNVSSARAELGARQNRLE 186

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1525406561 324 AIATAQQAESTDLSSAQSQITDANFAQETANMSKNQVLQQAGISVLAQANSLPqqVLKLLQ 384
Cdd:COG1344   187 SAINNLSDLSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQANQLS--LLDLLR 245
PRK12803 PRK12803
flagellin; Provisional
 4-384 2.04e-29

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 116.45  E-value: 2.04e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   4 INSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSS 83
Cdd:PRK12803    3 INHNTSAINASRNNSINAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNLNE 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  84 LTNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILNGNAGivsfqvganvgqtisldlsqs 163
Cdd:PRK12803   83 VEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLSNKSA--------------------- 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 164 msaakiggglvqkGQTVGTVTGLSLDTAGVYTSSGaaitainvLSDGQGGYTFTDQNGGAIAQTVAQSVFGASATTSNGT 243
Cdd:PRK12803  142 -------------AQNVRTAEELGMQPAKINTPAS--------LSGSQASWTLRVHVGANQDEAIAVNIYAANVANLFSG 200

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 244 AVGNLSIQASATSTSMSSAALTAITNAVAQiNAVNKPatvsgLDISTVSGANVAMVSIDNALQTVNNVQAQLGAAQNRFT 323
Cdd:PRK12803  201 EGAQQAAPVQEGAQQEGAQAAPAPAAAPAQ-GGVNSP-----VNVTTTVDANMSLAKIENAIRMISDQRANLGAFQNRLE 274

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1525406561 324 AIATAQQAESTDLSSAQSQITDANFAQETANMSKNQVLQQAGISVLAQANSLPQQVLKLLQ 384
Cdd:PRK12803  275 SIKASTEYAIENLKASYAQIKDATMTDEVVASTTNSILTQSAMAMIAQANQVPQYVLSLLR 335
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 4-140 5.86e-28

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 107.04  E-value: 5.86e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   4 INSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSS 83
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1525406561  84 LTNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILNGN 140
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGI 137
PRK12584 PRK12584
flagellin A; Reviewed
 4-384 1.31e-27

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 113.85  E-value: 1.31e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   4 INSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSS 83
Cdd:PRK12584    5 VNTNINALNAHVQSALTQNALKTSLEKLSSGLRINKAADDASGMTIADSLRSQASSLGQAIANTNDGMGIIQVADKAMDE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  84 LTNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILNGNAGIVSFQVGANVGQTISLDLSqS 163
Cdd:PRK12584   85 QLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIG-S 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 164 MSAAKIG------GGL------------------------VQKGQTVGTVTGLSLD-------------TAGVYTSSGAA 200
Cdd:PRK12584  164 TTSDKIGqvriatGALitasgdisltfkqvdgvndvtlesVKVSSSAGTGIGVLAEvinknsdrtgvkaYASVITTSDVA 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 201 I-------------------------------TAINVLSDGQGGYTFTDQNG----------GAIAQTVAQSVFGASATT 239
Cdd:PRK12584  244 VqsgslsnltlngihigniadikkndsdgrlvAAINAVTSETGVEAYTDQKGrlnlrsidgrGIEIKTDSVSNGPSALTM 323

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 240 SNG--------TAVGNLSIQ-------ASATSTSMSSAALTAI---------------------TNAVAQINAVNKPATV 283
Cdd:PRK12584  324 VNGgqdltkgsTNYGRLSLTrldardiNVVSASDSQHLGFSAIgfgesqvaettvnlrdvtgnfNANVKSASGANYNAVI 403

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 284 S------GLDISTVSGANVAMVSIDNALQTVNNVQAQLGAAQNRFTAIATAQQAESTDLSSAQSQITDANFAQETANMSK 357
Cdd:PRK12584  404 AsgnqslGSGVTTLRGAMVVMDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRDVDFAEESANFNK 483

                         490       500
                  ....*....|....*....|....*..
gi 1525406561 358 NQVLQQAGISVLAQANSLPQQVLKLLQ 384
Cdd:PRK12584  484 NNILAQSGSYAMSQANTVQQNILRLLT 510
PRK13588 PRK13588
flagellin B; Provisional
 4-384 1.47e-25

flagellin B; Provisional


Pssm-ID: 237440 [Multi-domain]  Cd Length: 514  Bit Score: 108.03  E-value: 1.47e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   4 INSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSS 83
Cdd:PRK13588    5 INTNIAALNAHAVGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQSANLGQAIRNANDAIGMVQTADKAMDE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  84 LTNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILNGNAGIVSFQVGANVGQTISLDLSQS 163
Cdd:PRK13588   85 QIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKASIGAT 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 164 MS----------------------------------------------AAKIGGGLVQ---------------------- 175
Cdd:PRK13588  165 SSdkighvrmetssfsgegmlasaaaqnltevglnfkqvdgvndykieTVRISTSAGTgigalseiinrfsdtlgvrasy 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 176 -------KGQTVGTVTGLSLDTAGVYT--------SSGAAITAINVLS---------DGQGGYTFTDQNGGAI---AQTV 228
Cdd:PRK13588  245 nvmatggTPVQSGTVRELTINGVEIGTvndvhkndADGRLINAINSVKdrtgveaslDIQGRINLTSIDGRAIsvhAASA 324

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 229 AQSVFGASATT---------------------------SNGTAVGNLSIQASATSTSMSSAALTAITNAVAQINAVNKPA 281
Cdd:PRK13588  325 SGQVFGGGNFAgisgtqhavvgrltltrtdardiivsgVNFSHVGFHSAQGVAEYTVNLRAVRGIFDANVASAAGANANG 404

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 282 TVS-------GLDISTVSGANVAMVSIDNALQTVNNVQAQLGAAQNRFTAIATAQQAESTDLSSAQSQITDANFAQETAN 354
Cdd:PRK13588  405 AQAetnsqgiGAGVTSLKGAMIVMDMAESARTQLDKIRSDMGSVQMQLVSTINNISVTQVNVKAAESQIRDVDFAEESAN 484

                         490       500       510
                  ....*....|....*....|....*....|
gi 1525406561 355 MSKNQVLQQAGISVLAQANSLPQQVLKLLQ 384
Cdd:PRK13588  485 FSKYNILAQSGSFAMAQANAVQQNVLRLLQ 514
PRK12805 PRK12805
FliC/FljB family flagellin;
2-212 4.20e-22

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 94.94  E-value: 4.20e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   2 LGINSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSAL 81
Cdd:PRK12805    1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  82 SSLTNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILN----GNAGIVSFQVGANVGQTIS 157
Cdd:PRK12805   81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDqtatGAATQVSIQASDKANDLIN 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1525406561 158 LDL--SQSMSAAKIGGGlvqKGQTVGTVTGLSLDTAGVYTSSGAAITA-INVLSDGQG 212
Cdd:PRK12805  161 IDLfnAKGLSAGTITLG---SGSTVAGYSALSVADADSSQEATEAIDElINNISNGRA 215
PRK13589 PRK13589
flagellin A;
4-170 2.79e-21

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 95.48  E-value: 2.79e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   4 INSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSS 83
Cdd:PRK13589    5 INTNIGALNAHANSVVNSRELDKSLSRLSSGLRINSAADDASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMDE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  84 LTNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILNGNAGIVSFQVGANVGQTISLDLSQS 163
Cdd:PRK13589   85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQTIKATIGAT 164


                  ....*..
gi 1525406561 164 MSaAKIG 170
Cdd:PRK13589  165 QS-SKIG 170
PRK08411 PRK08411
flagellin; Reviewed
 4-170 5.14e-20

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 91.59  E-value: 5.14e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   4 INSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSS 83
Cdd:PRK08411    5 INTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  84 LTNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILNGNAGIVSFQVGANVGQTISLDLSQS 163
Cdd:PRK08411   85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQTVKATIGAT 164


                  ....*..
gi 1525406561 164 MSaAKIG 170
Cdd:PRK08411  165 QS-SKIG 170
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 4-371 3.01e-18

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 84.32  E-value: 3.01e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   4 INSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSS 83
Cdd:TIGR02550   2 VSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  84 LTNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILNGNAGivsfqvganvgqtisldlsqs 163
Cdd:TIGR02550  82 VGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGTKT--------------------- 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 164 msaakiggglvqkgqtvgtvtglslDTAGVYTSSGAAITainvlsdgqggytftdQNGGAIAQTVAQSVFGASATTSNGT 243
Cdd:TIGR02550 141 -------------------------DTPPFSEDEGGEVT----------------YNGDGGQRKVQVASNRSMPIGHPGD 179

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 244 AVGNLSIQASATSTSMSSAALTAITNAVAQINAVNKPATVSgldistvsganVAMVSIDNALQTVNNVQAQLGAAQNRFT 323
Cdd:TIGR02550 180 KVFMSIPNNDKSVFSTGDDLIDALKKLEDALSSGDAKAALS-----------ASLNDLDKALDNVLSARAEVGARLNRLE 248

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 1525406561 324 AIATAQQAESTDLSSAQSQITDANFAQETANMSKNQVLQQAGISVLAQ 371
Cdd:TIGR02550 249 NLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAK 296
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 16-139 4.57e-18

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 83.50  E-value: 4.57e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  16 NLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSSLTNSLQRIRQLA 95
Cdd:PRK07701   15 NINSNLEKLDKYQEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNASDAKSWLENTESALDQATDILQRARELA 94

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1525406561  96 VQASTGTMSSTDQAALQQEVAQQIQEVNRIASqTTYNGTNILNG 139
Cdd:PRK07701   95 VQAANGTNTQTDRQAIAQEIEQLKEQLIQIAN-TQYNGRYIFNG 137
PRK06663 PRK06663
flagellar hook-associated protein 3;
13-139 1.17e-16

flagellar hook-associated protein 3;


Pssm-ID: 180648 [Multi-domain]  Cd Length: 419  Bit Score: 80.89  E-value: 1.17e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  13 AQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSSLTNSLQRIR 92
Cdd:PRK06663   13 LKSSLRRQESKMTKLQNQLSTGQRIQKLRDDPTAATHSIRYKSRLFKLDRYQKNIDDGKDRLRYAEGYLQSITNILQRAR 92

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1525406561  93 QLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILNG 139
Cdd:PRK06663   93 ELAVQGANGTYQADDKKKIAKEIDELLEDLVDIANARGADGYSIFSG 139
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 5-375 4.75e-14

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 73.02  E-value: 4.75e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   5 NSNINSLVAQQNlngsqnALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSSL 84
Cdd:PRK08870   10 QQSVNSMLDQQS------QLSQLQQQLSSGKKLLTPSDDPVAAAQAVNLSQQSALLDQYTKNINLARNRLQQEESTLGSV 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  85 TNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILNG-----------NAGIVSFQ------ 147
Cdd:PRK08870   84 EDLLQRARELVVQAGNGSLSDSDRQAIATELQGLRDQLLNLANSKDGSGNYLFAGtqsgtqpfafdASGNVVYSgdqgqr 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 148 -----VGANVGQTISLDlSQSMSAAKIGGGLVQKGQTVGTVTGLSldTAGVYTSSGAAITA----INVLSDGQGGYTFTD 218
Cdd:PRK08870  164 qvqvaDSVQVATNDPGD-EVFMSVPNGGGDYVPNANASNTGTGLL--GSASITDPSDPVNGdtytITFTDNGAGGTNTYV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 219 QNGGAIAQTVAQsvfgaSATTSNGTAVGNLSIQASATSTSMSSAALTAITNAV------AQINAVNKPATVSGLDISTVS 292
Cdd:PRK08870  241 TDSSTGTVVTAQ-----AYDAGQPINFNGVEVQISGAPAAGDSFTLTPAPQASifdtldDAIAALESPVSTPAADAALQN 315

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 293 GANVAMVSIDNALQTVNNVQAQLGAAQNRFTAIATAQQAESTDLSSAQSQITDANFAQETANMSKNQVLQQAGISVLAQA 372
Cdd:PRK08870  316 ALAQALRNLDNALNNVLTARASVGARLNELDSAEAVHEDNKLQNTSALSDLEDLDYASAISEFELQQAALQAAQQAFSKV 395


                  ...
gi 1525406561 373 NSL 375
Cdd:PRK08870  396 QSL 398
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 301-383 1.51e-12

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 62.73  E-value: 1.51e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 301 IDNALQTVNNVQAQLGAAQNRFTAIATAQQAESTDLSSAQSQITDANFAQETANMSKNQVLQQAGISVLAQANSLPQQVL 380
Cdd:pfam00700   4 IDEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQANQLPQSLL 83


                  ...
gi 1525406561 381 KLL 383
Cdd:pfam00700  84 NLL 86
flgL PRK12717
flagellar hook-associated protein 3;
32-142 6.73e-07

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 51.28  E-value: 6.73e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  32 SSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSSLTNSLQRIRQLAVQASTGTMSSTDQAAL 111
Cdd:PRK12717   31 SSGIRIQTAADDPVGAARLLQLQQQQAMLDQYSGNITTIKNSLTQEESTLTSINDTLQRARELAVSAGNGGLTDADRKAI 110

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1525406561 112 QQEVAQQIQEVNRIASQTTYNGTNILNGNAG 142
Cdd:PRK12717  111 ASELKQIEAQLLGLMNSKDANGQYLFAGSKS 141
flgL PRK12718
flagellar hook-associated protein FlgL; Provisional
 10-170 3.98e-06

flagellar hook-associated protein FlgL; Provisional


Pssm-ID: 79176 [Multi-domain]  Cd Length: 510  Bit Score: 48.65  E-value: 3.98e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  10 SLVAQQNLNGSQN---ALSQAITRLSSGKRINSAADD--AAGLAISTRMQTQINglNQGVSNANDGVSMIQTASSALSSL 84
Cdd:PRK12718    6 ALIYQNGLNGVLNqeaAMARLQEQLSSGRRVLTPADDplAAALAVNVSQTSSMN--SNYDANRKQAEQALGAQTNTLQSV 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  85 TNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILNGNAGIVS-FQVGANVGQT-------- 155
Cdd:PRK12718   84 VKNMQEMLKRVVEAGNGTMSDADRQALVIALKGAREELVGLANATDGNGQYLFSGYKGFTQpYSFDAATGKVtyngdlgq 163

                         170
                  ....*....|....*..
gi 1525406561 156 --ISLDLSQSMSAAKIG 170
Cdd:PRK12718  164 rgIQVDQSRLMSGGDVG 180
PRK12687 PRK12687
flagellin; Reviewed
 1-384 2.22e-05

flagellin; Reviewed


Pssm-ID: 105853 [Multi-domain]  Cd Length: 311  Bit Score: 45.81  E-value: 2.22e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   1 MLGINSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSA 80
Cdd:PRK12687    1 MSSLLTNTSAMTALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWSIATTMRSDNEALSAVSDALGLGAATVDTMYTA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  81 LSSLT----NSLQRIRQLAVQASTgtmSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILNGNAGIVSFQVGANVGQTI 156
Cdd:PRK12687   81 LTSVVgdskSGLTALKAKLVAARE---PGIDRTKIQSEITAIQNDLKNTAGLAVFNGENWLSVDSSPSSYNATKSVVSSF 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 157 SldlsqsmsaaKIGGGLvqkgqTVGTVTgLSLDTAGVYTSSGAAITAInvlsdgqggytftdqnggaiaqtVAQSVFGAS 236
Cdd:PRK12687  158 T----------RVGGTV-----AIKTID-VNIAKLALYDTNGSSTTGI-----------------------LDKTVTVGT 198

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561 237 ATTSngtavgnlsiqasatstsmssaaltaitnaVAQINAvnKPATVSGLDISTVSGanvAMVSIDNALQTVNNVQAQLG 316
Cdd:PRK12687  199 ATAS------------------------------VSSIDI--HLLTDSATDLTKLDG---YIGIVDQALGSVTQASADLG 243

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1525406561 317 AAQNRFTAIATAQQAESTDLSSAQSQITDANFAQETANMSKNQVLQQAGISVLAQANSLPQQVLKLLQ 384
Cdd:PRK12687  244 ATKTRIDSNSNFVKSLRDAIDRGVGQLVDADMNAESTRLQALQTQQQLGIQALSIANQGSQSILSLFK 311
PRK14692 PRK14692
flagellar hook-associated protein FlgL;
4-141 4.67e-05

flagellar hook-associated protein FlgL;


Pssm-ID: 173155 [Multi-domain]  Cd Length: 749  Bit Score: 45.34  E-value: 4.67e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   4 INSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSS 83
Cdd:PRK14692    3 ITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQD 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1525406561  84 LTNSLQRIRQLAVQASTGTMSSTDQAALQQEVaQQIQEVNRIASQTTYNGTNILNGNA 141
Cdd:PRK14692   83 MVKLLEDFKVKVTQAASDSNSQTSREAIAKEL-ERIKESIVQLANTSVNGQYLFAGSQ 139
flgL PRK08412
flagellar hook-associated protein FlgL; Validated
 16-141 6.50e-05

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 236261 [Multi-domain]  Cd Length: 827  Bit Score: 45.20  E-value: 6.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  16 NLNGSQNALSQAI----TRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSSLTNSLQRI 91
Cdd:PRK08412   11 QMNNYQNALQNKLndvnTQIASGLKIQYGYQDSDVYNQNLKLQYEENTLDQGIDVASSAYTFTLNTDKALNEFSKTMEAF 90

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1525406561  92 RQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASqTTYNGTNILNGNA 141
Cdd:PRK08412   91 KTKLIQAANDVHSETSREAIANDLEALKEHMINLAN-TSIGGEFLFSGSK 139
flgL PRK08073
flagellar hook-associated protein 3;
4-127 7.67e-05

flagellar hook-associated protein 3;


Pssm-ID: 181222 [Multi-domain]  Cd Length: 287  Bit Score: 44.20  E-value: 7.67e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   4 INSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSS 83
Cdd:PRK08073    3 VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLSMSEDPLAASKSFAIQHSLANIEQMQKDVADSKNVLNQTENTLSG 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1525406561  84 LTNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIAS 127
Cdd:PRK08073   83 MSKSLTRVDQLVLQALNGTNDEKELKAIGAEIDQILKQVVYLAN 126
flgL PRK07192
flagellar hook-associated protein FlgL; Reviewed
 4-122 3.34e-03

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 235956 [Multi-domain]  Cd Length: 305  Bit Score: 38.85  E-value: 3.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561   4 INSNINSLVAQQNLNGSQNALSQAITRLSSGKRINSAADDAAGLAISTRMQTQINGLNQGVSNANDGVSMIQTASSALSS 83
Cdd:PRK07192    3 ISTNTLYSTMLRSIQQLQAGLGKLQQQMSTGKRILTPSDDPIASARLLELSREQSNNSQYADNIANLSNSLNNQEGHLSG 82

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1525406561  84 LTNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEV 122
Cdd:PRK07192   83 VNDQLQSIRSLLVAAGNGSLSDEDRSAMATELRSMLDSL 121
flgL PRK08027
flagellar hook-filament junction protein FlgL;
10-139 8.94e-03

flagellar hook-filament junction protein FlgL;


Pssm-ID: 181202 [Multi-domain]  Cd Length: 317  Bit Score: 37.81  E-value: 8.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525406561  10 SLVAQQNLNGSQNALS---QAITRLSSGKRINSAADD---AAGLAISTRMQTQINGLNQGVSNANDGVSMiqtASSALSS 83
Cdd:PRK08027    6 QMMYQQNMRGITNSQAewmKYGEQMSTGKRVVNPSDDpiaASQAVVLSQAQAQNSQYTLARTFATQKVSL---EESVLSQ 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1525406561  84 LTNSLQRIRQLAVQASTGTMSSTDQAALQQEVAQQIQEVNRIASQTTYNGTNILNG 139
Cdd:PRK08027   83 VTTAIQNAQEKIVYAGNGTLSDDDRASLATDLQGLRDQLLNLANTTDGNGRYIFAG 138
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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